TCONS_00006116 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006116
Unique NameTCONS_00006116
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length422

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006116 ID=TCONS_00006116|Name=TCONS_00006116|organism=Clytia hemisphaerica|type=transcript|length=422bp
ATTGTAGTTTGGTCTTTTTGTGTATCATTTATGGAAGCTTTGACTCTATC
AAACACGATGCAGTTGCGCCTGGAATACTGTTCTTGTTTGTCGAGTTCTT
GTCGTAGGTTTGATGATATGATTTTTGAGACTGCAAGGGCAGCCTCGCTT
TGAATGAGAGTACTTTCTAGAGTGGAGACTTTTGTGTCCAAAGTGTTGAC
TTTTTGGGTGAGAGATTCAACCTTATTTTGAAGGAGAAACACCAGATTTT
TAAGTTCTCTTGGGTTGTTCGTAGAAACAATACCAGGTGATTCAGGTGTA
GATGAAATAGCAGGAACTAGTAAGTCTTCATTTTTCCTGTCTATGACAGA
GTCCTGAGATTTCTTTTTCGCAGATGATCTTGTTGATGTTGTTGATGAAA
TTTGTGATGTGTTTCTTCCTCC
Run BLAST on NCBI

protein sequence of TCONS_00006116-protein

>TCONS_00006116-protein ID=TCONS_00006116-protein|Name=TCONS_00006116-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
GGRNTSQISSTTSTRSSAKKKSQDSVIDRKNEDLLVPAISSTPESPGIVS
TNNPRELKNLVFLLQNKVESLTQKVNTLDTKVSTLESTLIQSEAALAVSK
IISSNLRQELDKQEQYSRRNCIVFDRVKASINDTQKDQTT
Run BLAST on NCBI

transcript from alignment at sc0000062:744138..744559

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006116 ID=TCONS_00006116|Name=TCONS_00006116|organism=Clytia hemisphaerica|type=transcript|length=422bp|location=Sequence derived from alignment at sc0000062:744138..744559 (Clytia hemisphaerica)
GGAGGAAGAAACACATCACAAATTTCATCAACAACATCAACAAGATCATC
TGCGAAAAAGAAATCTCAGGACTCTGTCATAGACAGGAAAAATGAAGACT
TACTAGTTCCTGCTATTTCATCTACACCTGAATCACCTGGTATTGTTTCT
ACGAACAACCCAAGAGAACTTAAAAATCTGGTGTTTCTCCTTCAAAATAA
GGTTGAATCTCTCACCCAAAAAGTCAACACTTTGGACACAAAAGTCTCCA
CTCTAGAAAGTACTCTCATTCAAAGCGAGGCTGCCCTTGCAGTCTCAAAA
ATCATATCATCAAACCTACGACAAGAACTCGACAAACAAGAACAGTATTC
CAGGCGCAACTGCATCGTGTTTGATAGAGTCAAAGCTTCCATAAATGATA
CACAAAAAGACCAAACTACAAT

Coding sequence (CDS) from alignment at sc0000062:744138..744559

>TCONS_00006116 ID=TCONS_00006116|Name=TCONS_00006116|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at sc0000062:744138..744559 (Clytia hemisphaerica)
GGAGGAAGAAACACATCACAAATTTCATCAACAACATCAACAAGATCATC
TGCGAAAAAGAAATCTCAGGACTCTGTCATAGACAGGAAAAATGAAGACT
TACTAGTTCCTGCTATTTCATCTACACCTGAATCACCTGGTATTGTTTCT
ACGAACAACCCAAGAGAACTTAAAAATCTGGTGTTTCTCCTTCAAAATAA
GGTTGAATCTCTCACCCAAAAAGTCAACACTTTGGACACAAAAGTCTCCA
CTCTAGAAAGTACTCTCATTCAAAGCGAGGCTGCCCTTGCAGTCTCAAAA
ATCATATCATCAAACCTACGACAAGAACTCGACAAACAAGAACAGTATTC
CAGGCGCAACTGCATCGTGTTTGATAGAGTCAAAGCTTCCATAAATGATA
CACAAAAAGACCAAACTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003491XLOC_003491Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006116-exon-sc0000062-1491911889:744138..744559TCONS_00006116-exon-sc0000062-1491911889:744138..744559Clytia hemisphaericaexon
TCONS_00006116-exon-sc0000062-1510915933:744138..744559TCONS_00006116-exon-sc0000062-1510915933:744138..744559Clytia hemisphaericaexon
TCONS_00006116-exon-sc0000062-1575043694:744138..744559TCONS_00006116-exon-sc0000062-1575043694:744138..744559Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006116-proteinTCONS_00006116-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:744138..744559 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.428284	0.200477	0.140359	0	0	0	0	0	0.0945795	0.101498	0.125038	0	0	0.37056	0	0	0	0.173626	0	0	0	0.243744	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006116 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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