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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006109 ID=TCONS_00006109|Name=TCONS_00006109|organism=Clytia hemisphaerica|type=transcript|length=1562bp
GTGAAATTTGAGTCCACCTTTTGTCAATGCTGTGTTGACAGTGTCAACAA
ATGCGAGATTTTTAAAATCTCATGATTTTGTTGTCTGGAAAAGAGTAAGC
AGTGtacaaaaagaagagaaaaacaacaaacgCACATCGGTTTCGCAAGA
TGGCCGCTATTCCACTCCAGCAATCTTTCTTACCAGCTAATGTAGCTTTA
GGTGACATTTATCTTCCTGAAAAGAACAGCTATGAGACACCTTGTAAAAA
AGTCTATGGGTTTGATTATACAGGgaaatattttgttatatttACTGACG
AAAGAGTTTACCATTTGGGAGATGATGATGAAAGCTCTTGTTTTGATCCT
GAAAGATTCATTTCAGCTACTGTTTTGCATTACAATGAAGAGAAAAAAGG
TATCAATGATTCCACGATCAAGATTCGAATTAAGTATCCTTCCAAAACGG
TATATCATCGGTTTTATAACGCGATGGAATACGACAGTGATTCGACTAAC
TGGTTCATCCTTGATGACTTTGCTCTGAAATCTAATGACGAGGTTGGATC
TGGCTTAACCAAAGAGGTCACCATCTACCATGGCTGTTTGAAACCTTATC
TGGGAACGTCAAAGATTATCGAGATTGATGACCAATCAGATGCGAATACT
GTGAAACTCGAATATTCAAACCCTACAGCTCGGGCAACCAGTAGAAGGTT
GAAGCTTTGTAATAGTAGAATATTTGGACCTCTGTTAGCAGTTGTGTTAT
CGCGAACGGGAGAGTGTATCTTAGATTTGATACAatataatgaaaatgaa
atttcccaTTTAAAACGACTCGACTTGGAACAGGCAAGGATCAATTCATC
ACAAAACCTTTATTTCAACAGGGCTGCAGAAATGTTTTATCTTTTAAATG
AATATGAATATAGAGATGAAAAGCTGGAGATTATTGAGTATAACTTTGAC
GGAAATCAATTATCAAAGTATCCATTAGACTCTTCTGCATCTGTGGATCA
TATCGAGaacaatttatttttgaagtGGAACTGGGAAACAGTACAAGTTT
TCAACATCACTCAAACCAGAGTAACCACATTATGGCAGTTCCCAGTTGAC
GCAAATCCTAAGTTTGATTTCCGTGACGTGGAACTAATAAGAGGTCGCGG
AGgagtttattttcaaaaaactaatCTTCCAGATTTTGATGAATTTGATA
ATAGTGTGGATTTCATTACAAAACTTTACGACATTTATACTGGGGAAAAA
GTATTTGATCAAGATAAACAAAAACTGGTAAGGTTTCGTGACGAAGGACT
ATCAATTTGTGGTTATAACTGGCACATGGGTGAAGTTGCAACTGTGGAAA
ACGCAACAATTGTGAAGATAGAGAAAATTGAAACAAACATCAAAATGAAC
TTAAAGCATTTAGCTCGTTTGGCGTGTATGAAATGGTTAAGCGCAGAATA
CATGAGTAAGCGCTTACCAAAATGTTTACATTACTTAGTCGGAATATAAA
AACTCTTTATTTTATTCCAGAAAATGTCCGTACATGGGGGTGGAGGATAT
ATTGTCCGAAAG Run BLAST on NCBI protein sequence of TCONS_00006109-protein >TCONS_00006109-protein ID=TCONS_00006109-protein|Name=TCONS_00006109-protein|organism=Clytia hemisphaerica|type=polypeptide|length=449bp
MAAIPLQQSFLPANVALGDIYLPEKNSYETPCKKVYGFDYTGKYFVIFTD
ERVYHLGDDDESSCFDPERFISATVLHYNEEKKGINDSTIKIRIKYPSKT
VYHRFYNAMEYDSDSTNWFILDDFALKSNDEVGSGLTKEVTIYHGCLKPY
LGTSKIIEIDDQSDANTVKLEYSNPTARATSRRLKLCNSRIFGPLLAVVL
SRTGECILDLIQYNENEISHLKRLDLEQARINSSQNLYFNRAAEMFYLLN
EYEYRDEKLEIIEYNFDGNQLSKYPLDSSASVDHIENNLFLKWNWETVQV
FNITQTRVTTLWQFPVDANPKFDFRDVELIRGRGGVYFQKTNLPDFDEFD
NSVDFITKLYDIYTGEKVFDQDKQKLVRFRDEGLSICGYNWHMGEVATVE
NATIVKIEKIETNIKMNLKHLARLACMKWLSAEYMSKRLPKCLHYLVGI Run BLAST on NCBI transcript from alignment at sc0000062:602245..603806 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006109 ID=TCONS_00006109|Name=TCONS_00006109|organism=Clytia hemisphaerica|type=transcript|length=1562bp|location=Sequence derived from alignment at sc0000062:602245..603806 (Clytia hemisphaerica)
CTTTCGGACAATATATCCTCCACCCCCATGTACGGACATTTTCTGGAATA
AAATAAAGAGTTTTTATATTCCGACTAAGTAATGTAAACATTTTGGTAAG
CGCTTACTCATGTATTCTGCGCTTAACCATTTCATACACGCCAAACGAGC
TAAATGCTTTAAGTTCATTTTGATGTTTGTTTCAATTTTCTCTATCTTCA
CAATTGTTGCGTTTTCCACAGTTGCAACTTCACCCATGTGCCAGTTATAA
CCACAAATTGATAGTCCTTCGTCACGAAACCTTACCAGTTTTTGTTTATC
TTGATCAAATACTTTTTCCCCAGTATAAATGTCGTAAAGTTTTGTAATGA
AATCCACACTATTATCAAATTCATCAAAATCTGGAAGattagttttttga
aaataaactcCTCCGCGACCTCTTATTAGTTCCACGTCACGGAAATCAAA
CTTAGGATTTGCGTCAACTGGGAACTGCCATAATGTGGTTACTCTGGTTT
GAGTGATGTTGAAAACTTGTACTGTTTCCCAGTTCCacttcaaaaataaa
ttgttCTCGATATGATCCACAGATGCAGAAGAGTCTAATGGATACTTTGA
TAATTGATTTCCGTCAAAGTTATACTCAATAATCTCCAGCTTTTCATCTC
TATATTCATATTCATTTAAAAGATAAAACATTTCTGCAGCCCTGTTGAAA
TAAAGGTTTTGTGATGAATTGATCCTTGCCTGTTCCAAGTCGAGTCGTTT
TAAAtgggaaatttcattttcattatatTGTATCAAATCTAAGATACACT
CTCCCGTTCGCGATAACACAACTGCTAACAGAGGTCCAAATATTCTACTA
TTACAAAGCTTCAACCTTCTACTGGTTGCCCGAGCTGTAGGGTTTGAATA
TTCGAGTTTCACAGTATTCGCATCTGATTGGTCATCAATCTCGATAATCT
TTGACGTTCCCAGATAAGGTTTCAAACAGCCATGGTAGATGGTGACCTCT
TTGGTTAAGCCAGATCCAACCTCGTCATTAGATTTCAGAGCAAAGTCATC
AAGGATGAACCAGTTAGTCGAATCACTGTCGTATTCCATCGCGTTATAAA
ACCGATGATATACCGTTTTGGAAGGATACTTAATTCGAATCTTGATCGTG
GAATCATTGATACCTTTTTTCTCTTCATTGTAATGCAAAACAGTAGCTGA
AATGAATCTTTCAGGATCAAAACAAGAGCTTTCATCATCATCTCCCAAAT
GGTAAACTCTTTCGTCAGTaaatataacaaaatatttcCCTGTATAATCA
AACCCATAGACTTTTTTACAAGGTGTCTCATAGCTGTTCTTTTCAGGAAG
ATAAATGTCACCTAAAGCTACATTAGCTGGTAAGAAAGATTGCTGGAGTG
GAATAGCGGCCATCTTGCGAAACCGATGTGcgtttgttgtttttctcttc
tttttgtaCACTGCTTACTCTTTTCCAGACAACAAAATCATGAGATTTTA
AAAATCTCGCATTTGTTGACACTGTCAACACAGCATTGACAAAAGGTGGA
CTCAAATTTCAC Coding sequence (CDS) from alignment at sc0000062:602245..603806 >TCONS_00006109 ID=TCONS_00006109|Name=TCONS_00006109|organism=Clytia hemisphaerica|type=CDS|length=1350bp|location=Sequence derived from alignment at sc0000062:602245..603806 (Clytia hemisphaerica)
TTATATTCCGACTAAGTAATGTAAACATTTTGGTAAGCGCTTACTCATGT
ATTCTGCGCTTAACCATTTCATACACGCCAAACGAGCTAAATGCTTTAAG
TTCATTTTGATGTTTGTTTCAATTTTCTCTATCTTCACAATTGTTGCGTT
TTCCACAGTTGCAACTTCACCCATGTGCCAGTTATAACCACAAATTGATA
GTCCTTCGTCACGAAACCTTACCAGTTTTTGTTTATCTTGATCAAATACT
TTTTCCCCAGTATAAATGTCGTAAAGTTTTGTAATGAAATCCACACTATT
ATCAAATTCATCAAAATCTGGAAGattagttttttgaaaataaactcCTC
CGCGACCTCTTATTAGTTCCACGTCACGGAAATCAAACTTAGGATTTGCG
TCAACTGGGAACTGCCATAATGTGGTTACTCTGGTTTGAGTGATGTTGAA
AACTTGTACTGTTTCCCAGTTCCacttcaaaaataaattgttCTCGATAT
GATCCACAGATGCAGAAGAGTCTAATGGATACTTTGATAATTGATTTCCG
TCAAAGTTATACTCAATAATCTCCAGCTTTTCATCTCTATATTCATATTC
ATTTAAAAGATAAAACATTTCTGCAGCCCTGTTGAAATAAAGGTTTTGTG
ATGAATTGATCCTTGCCTGTTCCAAGTCGAGTCGTTTTAAAtgggaaatt
tcattttcattatatTGTATCAAATCTAAGATACACTCTCCCGTTCGCGA
TAACACAACTGCTAACAGAGGTCCAAATATTCTACTATTACAAAGCTTCA
ACCTTCTACTGGTTGCCCGAGCTGTAGGGTTTGAATATTCGAGTTTCACA
GTATTCGCATCTGATTGGTCATCAATCTCGATAATCTTTGACGTTCCCAG
ATAAGGTTTCAAACAGCCATGGTAGATGGTGACCTCTTTGGTTAAGCCAG
ATCCAACCTCGTCATTAGATTTCAGAGCAAAGTCATCAAGGATGAACCAG
TTAGTCGAATCACTGTCGTATTCCATCGCGTTATAAAACCGATGATATAC
CGTTTTGGAAGGATACTTAATTCGAATCTTGATCGTGGAATCATTGATAC
CTTTTTTCTCTTCATTGTAATGCAAAACAGTAGCTGAAATGAATCTTTCA
GGATCAAAACAAGAGCTTTCATCATCATCTCCCAAATGGTAAACTCTTTC
GTCAGTaaatataacaaaatatttcCCTGTATAATCAAACCCATAGACTT
TTTTACAAGGTGTCTCATAGCTGTTCTTTTCAGGAAGATAAATGTCACCT
AAAGCTACATTAGCTGGTAAGAAAGATTGCTGGAGTGGAATAGCGGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006109-exon-sc0000062-1491911889:602245..603806 | TCONS_00006109-exon-sc0000062-1491911889:602245..603806 | Clytia hemisphaerica | exon |
| TCONS_00006109-exon-sc0000062-1510915933:602245..603806 | TCONS_00006109-exon-sc0000062-1510915933:602245..603806 | Clytia hemisphaerica | exon |
| TCONS_00006109-exon-sc0000062-1575043694:602245..603806 | TCONS_00006109-exon-sc0000062-1575043694:602245..603806 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000062 | supercontig | sc0000062:602245..603806 . |
Blast
The following BLAST results are available for this feature:
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