TCONS_00006108 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006108
Unique NameTCONS_00006108
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length476

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006108 ID=TCONS_00006108|Name=TCONS_00006108|organism=Clytia hemisphaerica|type=transcript|length=476bp
CTTCCAATGACCAACGAGATGCTTCTGGTAACAGTAACAAAATTTGTCGC
TTTTACAGAAATGGAAATTGCAAGCATGAATTTTGAGGAAAAGAATGCAA
TTTCTCACATCCAAAAATGTGCCGGAAATTCACCCAACATGGTACTAACA
AACAAAGAGGATGCAATCTTGGAAAAAGATGCAAGGATTTCCATCCCAAA
ATGTGCTTTGATTCCATACGCAAAGGTGAATGTCTCAACAAAACCTGCCA
CTTTACTCATGTGAAGGGAACCAGAAGAGACCCTGTTCTGGTAAAAAACA
CTGTATCACATGATAACAAGCTactgaaaagaggaaaagatgCAGAAACA
CAACCTTCGGAACCAGGCCATTTTTTAGAGATTGTTCGTCTGATGAAGGA
AGAAATCATGGAGACCCTGAGCAAAAAGATTTCCTCCATGGAGAATCATC
TTCAACACCTTCAACAGACACTACCC
Run BLAST on NCBI

protein sequence of TCONS_00006108-protein

>TCONS_00006108-protein ID=TCONS_00006108-protein|Name=TCONS_00006108-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MCRKFTQHGTNKQRGCNLGKRCKDFHPKMCFDSIRKGECLNKTCHFTHVK
GTRRDPVLVKNTVSHDNKLLKRGKDAETQPSEPGHFLEIVRLMKEEIMET
LSKKISSMENHLQHLQQTLP
Run BLAST on NCBI

transcript from alignment at sc0000062:502156..502631

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006108 ID=TCONS_00006108|Name=TCONS_00006108|organism=Clytia hemisphaerica|type=transcript|length=476bp|location=Sequence derived from alignment at sc0000062:502156..502631 (Clytia hemisphaerica)
GGGTAGTGTCTGTTGAAGGTGTTGAAGATGATTCTCCATGGAGGAAATCT
TTTTGCTCAGGGTCTCCATGATTTCTTCCTTCATCAGACGAACAATCTCT
AAAAAATGGCCTGGTTCCGAAGGTTGTGTTTCTGcatcttttcctctttt
cagtAGCTTGTTATCATGTGATACAGTGTTTTTTACCAGAACAGGGTCTC
TTCTGGTTCCCTTCACATGAGTAAAGTGGCAGGTTTTGTTGAGACATTCA
CCTTTGCGTATGGAATCAAAGCACATTTTGGGATGGAAATCCTTGCATCT
TTTTCCAAGATTGCATCCTCTTTGTTTGTTAGTACCATGTTGGGTGAATT
TCCGGCACATTTTTGGATGTGAGAAATTGCATTCTTTTCCTCAAAATTCA
TGCTTGCAATTTCCATTTCTGTAAAAGCGACAAATTTTGTTACTGTTACC
AGAAGCATCTCGTTGGTCATTGGAAG

Coding sequence (CDS) from alignment at sc0000062:502156..502631

>TCONS_00006108 ID=TCONS_00006108|Name=TCONS_00006108|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at sc0000062:502156..502631 (Clytia hemisphaerica)
GGGTAGTGTCTGTTGAAGGTGTTGAAGATGATTCTCCATGGAGGAAATCT
TTTTGCTCAGGGTCTCCATGATTTCTTCCTTCATCAGACGAACAATCTCT
AAAAAATGGCCTGGTTCCGAAGGTTGTGTTTCTGcatcttttcctctttt
cagtAGCTTGTTATCATGTGATACAGTGTTTTTTACCAGAACAGGGTCTC
TTCTGGTTCCCTTCACATGAGTAAAGTGGCAGGTTTTGTTGAGACATTCA
CCTTTGCGTATGGAATCAAAGCACATTTTGGGATGGAAATCCTTGCATCT
TTTTCCAAGATTGCATCCTCTTTGTTTGTTAGTACCATGTTGGGTGAATT
TCCGGCACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003483XLOC_003483Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006108-exon-sc0000062-1491911889:502156..502631TCONS_00006108-exon-sc0000062-1491911889:502156..502631Clytia hemisphaericaexon
TCONS_00006108-exon-sc0000062-1510915933:502156..502631TCONS_00006108-exon-sc0000062-1510915933:502156..502631Clytia hemisphaericaexon
TCONS_00006108-exon-sc0000062-1575043694:502156..502631TCONS_00006108-exon-sc0000062-1575043694:502156..502631Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006108-proteinTCONS_00006108-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:502156..502631 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.03312	1.16617	2.36255	0.479624	0.659735	0.566393	0.800667	1.21346	1.07027	1.06209	1.61545	1.65805	0.745358	0.625331	1.0986	0.612138	0.480768	0.408958	0.423749	1.18246	0.438485	0.375983	0	0	0.661777	1.45767	0.609124	0	0.3001	0.30052
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006108 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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