TCONS_00006102 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006102
Unique NameTCONS_00006102
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length876

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006102 ID=TCONS_00006102|Name=TCONS_00006102|organism=Clytia hemisphaerica|type=transcript|length=876bp
GNCCTCTTGGAATGCATTTCTTCTGGATTTCAGTTGGCGACATAAATTTC
TTATCCAAAAGTCCATGCAAAATCTCATCATGAATCCCCATGTTTCCCCA
TTTATCCTTGATGTCAATAAGATCAGGTTTTGTGGTGGGAATAACAACAT
CAGTATCAGAAAAGTCTTGGttgagattttcattggatGATTTAACTTCT
TCTTGGTTCTTTTCATTGACTTCGGTTTGTTTCTTCTTGGTTTTcttagc
tttttttttaattttctttttcttccNAAGAGTCTAGCATAcccacaccc
ctgtttcacattCACAGGCTAGGTTAGGTTGATAGAAAATTCGCCCAAAA
AACCCAGTGTATATATTCCGTTGTTTTACGGACATTATAAAagaacgttg
ttttgacgtttagcGTCCATAGAATACCCGTCTCAAGTATCCACTGGACT
TCTACTAATGCCCTATGAAAAGCTAACTTTTTCCAGTTTATTCGCAGTGA
TACTGGGTGTGATATACCTGAGCCGATAAAAAGAGTAGAGAAATTAACCT
GTTCatcgtatatttttgttttcccgTTATTTCAGGTGGTACTGAACAAT
CTTAGAGAGAAGATTTNCTACAATgtctttatcaatttttttcttttttt
tctttggagGCTGGTCACCGTTTCTGTTTGATTCTGCAATTATATCTGCT
AAATCTTCATCATTATAATCAGCTAGTTCTTCCACAATGCCAAGATCATC
AAATTCAGAACTATCTCCTTTTGTTTTATCAACATTTACCCAAGTTCTCT
TCTGTTTTCCCATTTTCACTTGCTTCTTGCTTTTTCAAAATCTCGtttag
tttgttttgattttttagcgTTACAC
Run BLAST on NCBI

transcript from alignment at sc0000062:330389..331264

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006102 ID=TCONS_00006102|Name=TCONS_00006102|organism=Clytia hemisphaerica|type=transcript|length=876bp|location=Sequence derived from alignment at sc0000062:330389..331264 (Clytia hemisphaerica)
GTGTAAcgctaaaaaatcaaaacaaactaaaCGAGATTTTGAAAAAGCAA
GAAGCAAGTGAAAATGGGAAAACAGAAGAGAACTTGGGTAAATGTTGATA
AAACAAAAGGAGATAGTTCTGAATTTGATGATCTTGGCATTGTGGAAGAA
CTAGCTGATTATAATGATGAAGATTTAGCAGATATAATTGCAGAATCAAA
CAGAAACGGTGACCAGCctccaaagaaaaaaaagaaaaaaattgataaag
acATTGTAGNAAATCTTCTCTCTAAGATTGTTCAGTACCACCTGAAATAA
cgggaaaacaaaaatatacgatGAACAGGTTAATTTCTCTACTCTTTTTA
TCGGCTCAGGTATATCACACCCAGTATCACTGCGAATAAACTGGAAAAAG
TTAGCTTTTCATAGGGCATTAGTAGAAGTCCAGTGGATACTTGAGACGGG
TATTCTATGGACgctaaacgtcaaaacaacgttctTTTATAATGTCCGTA
AAACAACGGAATATATACACTGGGTTTTTTGGGCGAATTTTCTATCAACC
TAACCTAGCCTGTGaatgtgaaacaggggtgtgggTATGCTAGACTCTTN
ggaagaaaaagaaaattaaaaaaaaagctaagAAAACCAAGAAGAAACAA
ACCGAAGTCAATGAAAAGAACCAAGAAGAAGTTAAATCatccaatgaaaa
tctcaaCCAAGACTTTTCTGATACTGATGTTGTTATTCCCACCACAAAAC
CTGATCTTATTGACATCAAGGATAAATGGGGAAACATGGGGATTCATGAT
GAGATTTTGCATGGACTTTTGGATAAGAAATTTATGTCGCCAACTGAAAT
CCAGAAGAAATGCATTCCAAGAGGNC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003477XLOC_003477Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006102-exon-sc0000062-1491911889:330389..331264TCONS_00006102-exon-sc0000062-1491911889:330389..331264Clytia hemisphaericaexon
TCONS_00006102-exon-sc0000062-1510915933:330389..331264TCONS_00006102-exon-sc0000062-1510915933:330389..331264Clytia hemisphaericaexon
TCONS_00006102-exon-sc0000062-1575043694:330389..331264TCONS_00006102-exon-sc0000062-1575043694:330389..331264Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:330389..331264 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
40.6891	39.9389	18.8503	13.9576	40.599	31.6848	18.6005	21.3828	10.4436	11.7146	9.59217	8.56773	8.48821	7.45767	9.33274	10.4368	10.1421	9.37217	1.30047	2.70461	14.398	10.4602	33.8476	31.7704	16.5041	17.0727	4.86439	3.58051	20.3087	23.2777
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006102 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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