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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006101 ID=TCONS_00006101|Name=TCONS_00006101|organism=Clytia hemisphaerica|type=transcript|length=1625bp
ATAAGGGAGGGAGTAGattaaaaagtatttttgatGTCATGATCTGGTAA
TGATATCAAATTGTTGTAGACTGGGAATCTCTTTGACAAAAGTTTACTTA
AGGTaatgttttcatttcatttcagtttgattttagtttttcaaaaataa
tgggTAAGAAAAGACGTTCAAGAGAGAAGAACAGTTGTTCATCTAATGTT
TATAGTGGTGAATCTGACGAGGAGGCCTCTAAAAGTGAAGTtgtggtcaa
aagaaaagtactTAGAGCAAGAACAGGCTCTCGGAATATGGTTAAAACGA
AAGGTGTAAGTGATGATTATGATGCAGACTCTGAAACTGATTTGACGAGG
AATGGAAAACCATCTCCCTGCAAAGAACTACAATTACAGCCAAGAATATC
TTTGACCAAGCTTAAGATATCACCTAAGGTTACAAAAAGTAAAGAGAAAT
CAGTCAAtgtgacagttttacaagagtGTACTGTTAATTTGGATGATTGC
GTTTATAGtaaggaaaatttgaaatgtatACAAACGCCTGGAGATATTAT
TTCATTGCATCCAGAGGACCAAGAGAATGTAACACCTCCTGATAACCATT
CTACACCACATCTTTCCAAAGTTGCCAAAAACCTTGATAATTCTTTATTT
GGATTCAATGATGTTGTTGAAAATGAATTAAATTACTCTACAATAACATC
TGCAAGTACCTCTGTATTAAATTCGAGTAGTAAATCAATGGTTAAAACAT
ATTCTTCCCGTAGCAAACGTAAATTTGATACTGGGTTCGATGACATCCCA
ATAGAGGAGCCTAAAAAGAGGcctaagagaaagaaaaaagagaaagttgA
ACCAGAAAAACAAGAAGATGAATTATGGGAGAATTTGAGACAACAATTTG
AAGAAGTTGAAATGCATGAATTATGTGTTGAATAAATTGATTGGTTTTTT
GGTATTAtaatatttgtgtttttttttaaccttgTGTACATTATCTGACT
TTAttgaaatgtttgtttgtttgtcatATTACAGTTGTTGGTTTATGATG
AATCTGGTGTTGAATGTTGAAAATGTTGGAAAAGTTGTTTAAGACTGAAA
ATTATATGGAATTTTGTAACATTAGATTTTATTAACAAGAAATTCAATAT
TGTTTCATTACTGGATCATGGCCTTAAGGTTTTAATGGATAGGGAAAATA
CATTCTTGAAAAGAATCATATCCAATTCAAtaaagtcaaattttttcatt
aagATTTGAGTTTTTAATGATCTTTTGGATTCAATTTCAAAGTGTACAGC
TCTTGCTGAATTGTTCAAAGTCAAGGTCAATATACCCCAgacacgttttt
tatttttgtcttttttgtaaatatatgtTGGATATTCTTTGAATGTAAat
agatttttatttataattatTACGAGCCCAAAAACACATAACACTTCTCC
CAAGCTCTGCTAAAATCTCCCTTAATGGCCTCCCTGGAAAATGGTGTCCT
TTTAACGACCTATTATAATATAAGTGTATGTAATTGTTTTGAGTTTATTA
TCTTAAGAGCAGcaatatcaaaatattcaaaaaatactCTACTACTATGT
CTTTTGTCTCTTTGTCCTTTATTTC Run BLAST on NCBI protein sequence of TCONS_00006101-protein >TCONS_00006101-protein ID=TCONS_00006101-protein|Name=TCONS_00006101-protein|organism=Clytia hemisphaerica|type=polypeptide|length=261bp
MGKKRRSREKNSCSSNVYSGESDEEASKSEVVVKRKVLRARTGSRNMVKT
KGVSDDYDADSETDLTRNGKPSPCKELQLQPRISLTKLKISPKVTKSKEK
SVNVTVLQECTVNLDDCVYSKENLKCIQTPGDIISLHPEDQENVTPPDNH
STPHLSKVAKNLDNSLFGFNDVVENELNYSTITSASTSVLNSSSKSMVKT
YSSRSKRKFDTGFDDIPIEEPKKRPKRKKKEKVEPEKQEDELWENLRQQF
EEVEMHELCVE Run BLAST on NCBI transcript from alignment at sc0000062:316750..318374 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006101 ID=TCONS_00006101|Name=TCONS_00006101|organism=Clytia hemisphaerica|type=transcript|length=1625bp|location=Sequence derived from alignment at sc0000062:316750..318374 (Clytia hemisphaerica)
GAAATAAAGGACAAAGAGACAAAAGACATAGTAGTAGagtattttttgaa
tattttgatattgCTGCTCTTAAGATAATAAACTCAAAACAATTACATAC
ACTTATATTATAATAGGTCGTTAAAAGGACACCATTTTCCAGGGAGGCCA
TTAAGGGAGATTTTAGCAGAGCTTGGGAGAAGTGTTATGTGTTTTTGGGC
TCGTAataattataaataaaaatctatTTACATTCAAAGAATATCCAaca
tatatttacaaaaaagacaaaaataaaaaacgtgtcTGGGGTATATTGAC
CTTGACTTTGAACAATTCAGCAAGAGCTGTACACTTTGAAATTGAATCCA
AAAGATCATTAAAAACTCAAATcttaatgaaaaaatttgactttaTTGAA
TTGGATATGATTCTTTTCAAGAATGTATTTTCCCTATCCATTAAAACCTT
AAGGCCATGATCCAGTAATGAAACAATATTGAATTTCTTGTTAATAAAAT
CTAATGTTACAAAATTCCATATAATTTTCAGTCTTAAACAACTTTTCCAA
CATTTTCAACATTCAACACCAGATTCATCATAAACCAACAACTGTAATat
gacaaacaaacaaacatttcaaTAAAGTCAGATAATGTACAcaaggttaa
aaaaaaacacaaatattaTAATACCAAAAAACCAATCAATTTATTCAACA
CATAATTCATGCATTTCAACTTCTTCAAATTGTTGTCTCAAATTCTCCCA
TAATTCATCTTCTTGTTTTTCTGGTTcaactttctcttttttctttctct
taggCCTCTTTTTAGGCTCCTCTATTGGGATGTCATCGAACCCAGTATCA
AATTTACGTTTGCTACGGGAAGAATATGTTTTAACCATTGATTTACTACT
CGAATTTAATACAGAGGTACTTGCAGATGTTATTGTAGAGTAATTTAATT
CATTTTCAACAACATCATTGAATCCAAATAAAGAATTATCAAGGTTTTTG
GCAACTTTGGAAAGATGTGGTGTAGAATGGTTATCAGGAGGTGTTACATT
CTCTTGGTCCTCTGGATGCAATGAAATAATATCTCCAGGCGTTTGTatac
atttcaaattttccttaCTATAAACGCAATCATCCAAATTAACAGTACac
tcttgtaaaactgtcacaTTGACTGATTTCTCTTTACTTTTTGTAACCTT
AGGTGATATCTTAAGCTTGGTCAAAGATATTCTTGGCTGTAATTGTAGTT
CTTTGCAGGGAGATGGTTTTCCATTCCTCGTCAAATCAGTTTCAGAGTCT
GCATCATAATCATCACTTACACCTTTCGTTTTAACCATATTCCGAGAGCC
TGTTCTTGCTCTAagtacttttcttttgaccacaACTTCACTTTTAGAGG
CCTCCTCGTCAGATTCACCACTATAAACATTAGATGAACAACTGTTCTTC
TCTCTTGAACGTCTTTTCTTAcccattatttttgaaaaactaaaatcaaa
ctgaaatgaaatgaaaacattACCTTAAGTAAACTTTTGTCAAAGAGATT
CCCAGTCTACAACAATTTGATATCATTACCAGATCATGACatcaaaaata
ctttttaatCTACTCCCTCCCTTAT Coding sequence (CDS) from alignment at sc0000062:316750..318374 >TCONS_00006101 ID=TCONS_00006101|Name=TCONS_00006101|organism=Clytia hemisphaerica|type=CDS|length=786bp|location=Sequence derived from alignment at sc0000062:316750..318374 (Clytia hemisphaerica)
TTATTCAACACATAATTCATGCATTTCAACTTCTTCAAATTGTTGTCTCA
AATTCTCCCATAATTCATCTTCTTGTTTTTCTGGTTcaactttctctttt
ttctttctcttaggCCTCTTTTTAGGCTCCTCTATTGGGATGTCATCGAA
CCCAGTATCAAATTTACGTTTGCTACGGGAAGAATATGTTTTAACCATTG
ATTTACTACTCGAATTTAATACAGAGGTACTTGCAGATGTTATTGTAGAG
TAATTTAATTCATTTTCAACAACATCATTGAATCCAAATAAAGAATTATC
AAGGTTTTTGGCAACTTTGGAAAGATGTGGTGTAGAATGGTTATCAGGAG
GTGTTACATTCTCTTGGTCCTCTGGATGCAATGAAATAATATCTCCAGGC
GTTTGTatacatttcaaattttccttaCTATAAACGCAATCATCCAAATT
AACAGTACactcttgtaaaactgtcacaTTGACTGATTTCTCTTTACTTT
TTGTAACCTTAGGTGATATCTTAAGCTTGGTCAAAGATATTCTTGGCTGT
AATTGTAGTTCTTTGCAGGGAGATGGTTTTCCATTCCTCGTCAAATCAGT
TTCAGAGTCTGCATCATAATCATCACTTACACCTTTCGTTTTAACCATAT
TCCGAGAGCCTGTTCTTGCTCTAagtacttttcttttgaccacaACTTCA
CTTTTAGAGGCCTCCTCGTCAGATTCACCACTATAAACATTAGATGAACA
ACTGTTCTTCTCTCTTGAACGTCTTTTCTTAcccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006101-exon-sc0000062-1491911889:316750..318374 | TCONS_00006101-exon-sc0000062-1491911889:316750..318374 | Clytia hemisphaerica | exon |
| TCONS_00006101-exon-sc0000062-1510915933:316750..318374 | TCONS_00006101-exon-sc0000062-1510915933:316750..318374 | Clytia hemisphaerica | exon |
| TCONS_00006101-exon-sc0000062-1575043694:316750..318374 | TCONS_00006101-exon-sc0000062-1575043694:316750..318374 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000062 | supercontig | sc0000062:316750..318374 . |
Blast
The following BLAST results are available for this feature:
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