TCONS_00006100 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006100
Unique NameTCONS_00006100
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length415

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006100 ID=TCONS_00006100|Name=TCONS_00006100|organism=Clytia hemisphaerica|type=transcript|length=415bp
CAGCTTGTTCCGAGAGAGACTTCTTGAAATTCATGAAGGAGAAGAAATAA
AGTGGGCGAATCAGTTTTCAAGCATATTGTTCGGTTTTTATTCATCTTTT
CATCAATTTCTTCCTGAAAGCCTTGGTGCACCAGAGAGTGAAGTCAAATT
GGATCCAGATCTATTCTTTTGATTAGTTAGTTTCGATCCTTGAGATAAGC
TTGGTGTACTTGCGAGAGATGATTGTCTCCTGTTTACAGAATCAATTTGG
TTTCCCCTCGGGATTTGGAAATCACCAAGATTGATGGAGTTGGGTATTTG
ATTGACTTTGACTTGCTTTGGTGTCTGTAGCACATCCTCAAAATCAACTC
TGTCTTTAAAGCTACTTGCTATTGGAGACGAAAATGTCCTCAAGATAGAC
TGCTCTTTTGGTGGG
Run BLAST on NCBI

protein sequence of TCONS_00006100-protein

>TCONS_00006100-protein ID=TCONS_00006100-protein|Name=TCONS_00006100-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
PPKEQSILRTFSSPIASSFKDRVDFEDVLQTPKQVKVNQIPNSINLGDFQ
IPRGNQIDSVNRRQSSLASTPSLSQGSKLTNQKNRSGSNLTSLSGAPRLS
GRN
Run BLAST on NCBI

transcript from alignment at sc0000062:293947..294361

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006100 ID=TCONS_00006100|Name=TCONS_00006100|organism=Clytia hemisphaerica|type=transcript|length=415bp|location=Sequence derived from alignment at sc0000062:293947..294361 (Clytia hemisphaerica)
CCCACCAAAAGAGCAGTCTATCTTGAGGACATTTTCGTCTCCAATAGCAA
GTAGCTTTAAAGACAGAGTTGATTTTGAGGATGTGCTACAGACACCAAAG
CAAGTCAAAGTCAATCAAATACCCAACTCCATCAATCTTGGTGATTTCCA
AATCCCGAGGGGAAACCAAATTGATTCTGTAAACAGGAGACAATCATCTC
TCGCAAGTACACCAAGCTTATCTCAAGGATCGAAACTAACTAATCAAAAG
AATAGATCTGGATCCAATTTGACTTCACTCTCTGGTGCACCAAGGCTTTC
AGGAAGAAATTGATGAAAAGATGAATAAAAACCGAACAATATGCTTGAAA
ACTGATTCGCCCACTTTATTTCTTCTCCTTCATGAATTTCAAGAAGTCTC
TCTCGGAACAAGCTG

Coding sequence (CDS) from alignment at sc0000062:293947..294361

>TCONS_00006100 ID=TCONS_00006100|Name=TCONS_00006100|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0000062:293947..294361 (Clytia hemisphaerica)
CCACCAAAAGAGCAGTCTATCTTGAGGACATTTTCGTCTCCAATAGCAAG
TAGCTTTAAAGACAGAGTTGATTTTGAGGATGTGCTACAGACACCAAAGC
AAGTCAAAGTCAATCAAATACCCAACTCCATCAATCTTGGTGATTTCCAA
ATCCCGAGGGGAAACCAAATTGATTCTGTAAACAGGAGACAATCATCTCT
CGCAAGTACACCAAGCTTATCTCAAGGATCGAAACTAACTAATCAAAAGA
ATAGATCTGGATCCAATTTGACTTCACTCTCTGGTGCACCAAGGCTTTCA
GGAAGAAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003475XLOC_003475Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006100-proteinTCONS_00006100-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006100-exon-sc0000062-1491911889:293947..294361TCONS_00006100-exon-sc0000062-1491911889:293947..294361Clytia hemisphaericaexon
TCONS_00006100-exon-sc0000062-1510915933:293947..294361TCONS_00006100-exon-sc0000062-1510915933:293947..294361Clytia hemisphaericaexon
TCONS_00006100-exon-sc0000062-1575043694:293947..294361TCONS_00006100-exon-sc0000062-1575043694:293947..294361Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:293947..294361 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.194999	0	1.62576	0.183528	0	0.207289	0.145128	0	0	0.229398	0	0	0	0	0	0	0	0	0	0	0	0	0	0.495076	0.236151	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006100 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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