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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006093 ID=TCONS_00006093|Name=TCONS_00006093|organism=Clytia hemisphaerica|type=transcript|length=1885bp
GCACGTGAACTCCTATTGAAATTGTATTGTCAGTCTTGGTATGATTTCAC
GAgttgaacatttttttctttgatcgGAAAAAGTTGACGCAAAATGAAGC
AATGTGGTTTTCTTTTTATCCTTTAAAAACAGTTTATGCGTTTTGTATTT
AAAAAGGTAAGAGCTTTTCAGAACATCGACTGTCAAAAAGCAAAACTTCA
TTTTCGCTATTTCGAATCAAGTTCCTTGAAAAGGGAACCTCTATTTTGTC
CCTGTAGTTTTTTTTGGATATTTATGAGTATATTGACAATAAGACCCGGA
GAATTTTAATTGGGGTAAAATTGGACTACCCCTTTTAAATTTTGGTCACT
TTCTTTCTTTCCCAGTAAAGTTTTAgtattttttagttttatacCTGTCA
TCCAGATATACAGTGTATAACTTTATTATATCATATTAATTTTGGTAGCA
TTTCGAATCGCATACACATACTCACACACACACAacctttttttatgatt
ttagaaATTGTTCATAACTCATTTTCTAATTATTAGTTTTCGTATTATTT
AGGCTTTTTGTTCGTTATATAATTCGTTCTACGTAATCAAGGTTGCCGAT
AAATATTTGTGTCGAAGAATTGATTCCGCTTTCATATGATGCAGGGGTGA
TATTTCCCCGTccattttctttaatttgacGATTTCTCATTTATCTAAGT
CAATAAAAATGTTCAATAAGTGTTAAAACAGCTAAGCGTAATTTCTATGG
ACCATTTGTCGACAACCTTGATTTTGCTTTAGTCTCCCAACGGAAACTTC
CCAAGTTTTATTACATTTGACGATACCTATACCTTACCGTCTCTAATTTC
GCCAAGGGCCTAAAATCAACGCCGATGAGGGTTTGcctgaaatcaaagaa
aatacaatgaaaatattctttcttgaccttgaaaaatataaagtaaaaaG
CAACGAATTCTGTACCAAACCCTTTTTAGGATATTTCTATTGTATGTTGT
TTTTcatattatttcttttttcgTTAAGTCATTTAGGGCGTCAACTTTGA
ACGGTGTATTAtaattatttgaaatattttttaaccaaacTAAAAAAACC
ACAATTTTTTATGTTTGTCACACCACTTTTAGTTTTTAGAAGCACGAGAT
ATGTTCATTTTATCTCTTCAGTGTCTGCCCATGGTAAGCGTGCACTTTTT
TACACaaccttctcacagactcatTGGGAGTGGGCCACTGCAAAAATTGG
TCAAACTATCGGTTCCAGgtgaaaattatactccaaccTTTTTCCCGCAG
aagataatcaaataaaaaaaatcctcactgcaaaatattgtgctaaattt
tttttcaacctcAATGAATTTTCCGACTCGTAAACAATGGAATTCCAATC
CCTAGCCATGAAAGACGTTTagatatcaatccccatcgagtttcagtccg
ttgttTTTACCTCCATTagctgaaaatggctgaaaaagactgaaattttt
tcgaaTGTGGTTATTTAATTTCAATAAAACATGCTTCTAAGTTTTTCTTG
ACTTTGTCAAACTTTGAAGCTCTTCACAGGATTTTCTATTTAAATTGGTG
TGAATTAGAGTATTAGTTTcaactggggacgatattttagccAATGGAAG
TAAGGTTCCCTCGATTCTGTGAGAAAGTGGTGTTTTTTTGTGGAAACCAC
TCTTTAAGGAATTATTCTAATTCGATTGACATAGTTTTCACACGAAAGAA
AATATAAATGCACACCTATCTTGAACAGAATCTAGATTAATGTATTACAA
TCTGTATACcgaatgtttgttttttcattttaaaaatgtcaTAGCTATAA
AACTATGTCTGCTTTCTCAATCATTTGAATGATAC Run BLAST on NCBI transcript from alignment at sc0000062:175608..177492 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006093 ID=TCONS_00006093|Name=TCONS_00006093|organism=Clytia hemisphaerica|type=transcript|length=1885bp|location=Sequence derived from alignment at sc0000062:175608..177492 (Clytia hemisphaerica)
GTATCATTCAAATGATTGAGAAAGCAGACATAGTTTTATAGCTAtgacat
ttttaaaatgaaaaaacaaacattcgGTATACAGATTGTAATACATTAAT
CTAGATTCTGTTCAAGATAGGTGTGCATTTATATTTTCTTTCGTGTGAAA
ACTATGTCAATCGAATTAGAATAATTCCTTAAAGAGTGGTTTCCACAAAA
AAACACCACTTTCTCACAGAATCGAGGGAACCTTACTTCCATTggctaaa
atatcgtccccagttgAAACTAATACTCTAATTCACACCAATTTAAATAG
AAAATCCTGTGAAGAGCTTCAAAGTTTGACAAAGTCAAGAAAAACTTAGA
AGCATGTTTTATTGAAATTAAATAACCACAttcgaaaaaatttcagtctt
tttcagccattttcagctAATGGAGGTAAAaacaacggactgaaactcga
tggggattgatatctAAACGTCTTTCATGGCTAGGGATTGGAATTCCATT
GTTTACGAGTCGGAAAATTCATTgaggttgaaaaaaaatttagcacaata
ttttgcagtgaggattttttttatttgattatcttCTGCGGGAAAAAggt
tggagtataattttcacCTGGAACCGATAGTTTGACCAATTTTTGCAGTG
GCCCACTCCCAatgagtctgtgagaaggttGTGTAAAAAAGTGCACGCTT
ACCATGGGCAGACACTGAAGAGATAAAATGAACATATCTCGTGCTTCTAA
AAACTAAAAGTGGTGTGACAAACATAAAAAATTGTGGTTTTTTTAgtttg
gttaaaaaatatttcaaataattaTAATACACCGTTCAAAGTTGACGCCC
TAAATGACTTAAcgaaaaaagaaataatatgAAAAACAACATACAATAGA
AATATCCTAAAAAGGGTTTGGTACAGAATTCGTTGCtttttactttatat
ttttcaaggtcaagaaagaatattttcattgtattttctttgatttcagg
CAAACCCTCATCGGCGTTGATTTTAGGCCCTTGGCGAAATTAGAGACGGT
AAGGTATAGGTATCGTCAAATGTAATAAAACTTGGGAAGTTTCCGTTGGG
AGACTAAAGCAAAATCAAGGTTGTCGACAAATGGTCCATAGAAATTACGC
TTAGCTGTTTTAACACTTATTGAACATTTTTATTGACTTAGATAAATGAG
AAATCgtcaaattaaagaaaatggACGGGGAAATATCACCCCTGCATCAT
ATGAAAGCGGAATCAATTCTTCGACACAAATATTTATCGGCAACCTTGAT
TACGTAGAACGAATTATATAACGAACAAAAAGCCTAAATAATACGAAAAC
TAATAATTAGAAAATGAGTTATGAACAATttctaaaatcataaaaaaagg
tTGTGTGTGTGTGAGTATGTGTATGCGATTCGAAATGCTACCAAAATTAA
TATGATATAATAAAGTTATACACTGTATATCTGGATGACAGgtataaaac
taaaaaatacTAAAACTTTACTGGGAAAGAAAGAAAGTGACCAAAATTTA
AAAGGGGTAGTCCAATTTTACCCCAATTAAAATTCTCCGGGTCTTATTGT
CAATATACTCATAAATATCCAAAAAAAACTACAGGGACAAAATAGAGGTT
CCCTTTTCAAGGAACTTGATTCGAAATAGCGAAAATGAAGTTTTGCTTTT
TGACAGTCGATGTTCTGAAAAGCTCTTACCTTTTTAAATACAAAACGCAT
AAACTGTTTTTAAAGGATAAAAAGAAAACCACATTGCTTCATTTTGCGTC
AACTTTTTCcgatcaaagaaaaaaatgttcaacTCGTGAAATCATACCAA
GACTGACAATACAATTTCAATAGGAGTTCACGTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006093-exon-sc0000062-1491911889:175608..177492 | TCONS_00006093-exon-sc0000062-1491911889:175608..177492 | Clytia hemisphaerica | exon |
| TCONS_00006093-exon-sc0000062-1510915933:175608..177492 | TCONS_00006093-exon-sc0000062-1510915933:175608..177492 | Clytia hemisphaerica | exon |
| TCONS_00006093-exon-sc0000062-1575043694:175608..177492 | TCONS_00006093-exon-sc0000062-1575043694:175608..177492 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000062 | supercontig | sc0000062:175608..177492 . |
Blast
The following BLAST results are available for this feature:
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