TCONS_00006092 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006092
Unique NameTCONS_00006092
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length222

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006092 ID=TCONS_00006092|Name=TCONS_00006092|organism=Clytia hemisphaerica|type=transcript|length=222bp
GTCTATGAGAACAAAAGTAGAAGTagaaaacagcaaatgtataaATGAAT
GATTGAAGTACTAATATAatgtaaaagaaaatctaaCTTAACTTAACTTA
AGTGCCACAAATAGAGATggagaaaagaaacaaaaaactcaCCAGCTGGC
CTGAGGTAGAATGCTGTAAGCAGGCAGCAGAACACAGGGTGTGTCAAGAC
TAACACCAACTGTGTGAAAATG
Run BLAST on NCBI

transcript from alignment at sc0000062:151984..152205

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006092 ID=TCONS_00006092|Name=TCONS_00006092|organism=Clytia hemisphaerica|type=transcript|length=222bp|location=Sequence derived from alignment at sc0000062:151984..152205 (Clytia hemisphaerica)
CATTTTCACACAGTTGGTGTTAGTCTTGACACACCCTGTGTTCTGCTGCC
TGCTTACAGCATTCTACCTCAGGCCAGCTGGtgagttttttgtttctttt
ctccATCTCTATTTGTGGCACTTAAGTTAAGTTAAGttagattttctttt
acatTATATTAGTACTTCAATCATTCATttatacatttgctgttttctAC
TTCTACTTTTGTTCTCATAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003467XLOC_003467Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006092-exon-sc0000062-1491911889:151984..152205TCONS_00006092-exon-sc0000062-1491911889:151984..152205Clytia hemisphaericaexon
TCONS_00006092-exon-sc0000062-1510915933:151984..152205TCONS_00006092-exon-sc0000062-1510915933:151984..152205Clytia hemisphaericaexon
TCONS_00006092-exon-sc0000062-1575043694:151984..152205TCONS_00006092-exon-sc0000062-1575043694:151984..152205Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:151984..152205 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.60452	0	0	2.3907	3.76646	2.55556	3.08318	11.5457	3.1687	5.52811	9.96831	3.65605	1.4769	10.3455	5.57788	0	0	3.0335	1.66245	2.55893	0	2.08111	2.42629	2.18586	7.89749	8.22095	0	0	0	4.31219
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006092 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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