TCONS_00006090 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006090
Unique NameTCONS_00006090
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length446

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006090 ID=TCONS_00006090|Name=TCONS_00006090|organism=Clytia hemisphaerica|type=transcript|length=446bp
CAAGCATTTGCATATTCGTTGAATTCTAAGTCACCTGGGCAACCAACACA
TCCAACAGTGACTCCTTGCCAGCAACCAATATATTGCCTTCTATTGTTTG
GGTCCTCAATATTACCGTTAAAATCATATCCTCGGTTTGGGCACTCATCT
GGACATTCAAATGTGGTTGCTGGTTCCCATGGTTGTGTGGTGACACATTC
GTCTTTTCGGTTGTACAAACATTGGTTGCATGGCTCACTGAATTCTAAGG
ATAATGGCCAGCAGGCTTGACAATTAGCCTGACCGTCATTACATTGTAAG
AAGTAGTGCTTATCATATGGGTATTCGTGGTTTCCATTATATTTACCATT
ACAAAGGAAGTCAGGACATACTACACTTGGTGGTGTGGTTCCTGTAGCTG
TGGGCGCTATTAGGGCGTTTGAAATACCAAACATGATGCAAGCAAG
Run BLAST on NCBI

protein sequence of TCONS_00006090-protein

>TCONS_00006090-protein ID=TCONS_00006090-protein|Name=TCONS_00006090-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
LACIMFGISNALIAPTATGTTPPSVVCPDFLCNGKYNGNHEYPYDKHYFL
QCNDGQANCQACWPLSLEFSEPCNQCLYNRKDECVTTQPWEPATTFECPD
ECPNRGYDFNGNIEDPNNRRQYIGCWQGVTVGCVGCPGDLEFNEYANA
Run BLAST on NCBI

transcript from alignment at sc0000062:84640..85085

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006090 ID=TCONS_00006090|Name=TCONS_00006090|organism=Clytia hemisphaerica|type=transcript|length=446bp|location=Sequence derived from alignment at sc0000062:84640..85085 (Clytia hemisphaerica)
CTTGCTTGCATCATGTTTGGTATTTCAAACGCCCTAATAGCGCCCACAGC
TACAGGAACCACACCACCAAGTGTAGTATGTCCTGACTTCCTTTGTAATG
GTAAATATAATGGAAACCACGAATACCCATATGATAAGCACTACTTCTTA
CAATGTAATGACGGTCAGGCTAATTGTCAAGCCTGCTGGCCATTATCCTT
AGAATTCAGTGAGCCATGCAACCAATGTTTGTACAACCGAAAAGACGAAT
GTGTCACCACACAACCATGGGAACCAGCAACCACATTTGAATGTCCAGAT
GAGTGCCCAAACCGAGGATATGATTTTAACGGTAATATTGAGGACCCAAA
CAATAGAAGGCAATATATTGGTTGCTGGCAAGGAGTCACTGTTGGATGTG
TTGGTTGCCCAGGTGACTTAGAATTCAACGAATATGCAAATGCTTG

Coding sequence (CDS) from alignment at sc0000062:84640..85085

>TCONS_00006090 ID=TCONS_00006090|Name=TCONS_00006090|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at sc0000062:84640..85085 (Clytia hemisphaerica)
CTTGCTTGCATCATGTTTGGTATTTCAAACGCCCTAATAGCGCCCACAGC
TACAGGAACCACACCACCAAGTGTAGTATGTCCTGACTTCCTTTGTAATG
GTAAATATAATGGAAACCACGAATACCCATATGATAAGCACTACTTCTTA
CAATGTAATGACGGTCAGGCTAATTGTCAAGCCTGCTGGCCATTATCCTT
AGAATTCAGTGAGCCATGCAACCAATGTTTGTACAACCGAAAAGACGAAT
GTGTCACCACACAACCATGGGAACCAGCAACCACATTTGAATGTCCAGAT
GAGTGCCCAAACCGAGGATATGATTTTAACGGTAATATTGAGGACCCAAA
CAATAGAAGGCAATATATTGGTTGCTGGCAAGGAGTCACTGTTGGATGTG
TTGGTTGCCCAGGTGACTTAGAATTCAACGAATATGCAAATGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003465XLOC_003465Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006090-exon-sc0000062-1491911889:84640..85085TCONS_00006090-exon-sc0000062-1491911889:84640..85085Clytia hemisphaericaexon
TCONS_00006090-exon-sc0000062-1510915933:84640..85085TCONS_00006090-exon-sc0000062-1510915933:84640..85085Clytia hemisphaericaexon
TCONS_00006090-exon-sc0000062-1575043694:84640..85085TCONS_00006090-exon-sc0000062-1575043694:84640..85085Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006090-proteinTCONS_00006090-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:84640..85085 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.206821	0	0	0.358759	0	0	0.384913	0.807409	0.812076	0	0	29.6771	51.6683	28.5976	118.767	38.0518	6.33752	10.4859	0	1.00179	0	0	0	0	0	0	0	0	0	0.217028
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002557Chitin-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008061 chitin binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006090 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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