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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006085 ID=TCONS_00006085|Name=TCONS_00006085|organism=Clytia hemisphaerica|type=transcript|length=2178bpRun BLAST on NCBI protein sequence of TCONS_00006085-protein >TCONS_00006085-protein ID=TCONS_00006085-protein|Name=TCONS_00006085-protein|organism=Clytia hemisphaerica|type=polypeptide|length=396bp MAAAIPENKSLQERINALSIQLEAEEKRPSLNLDLNSTSEKPLKPKPKLGRun BLAST on NCBI transcript from alignment at sc0000062:655682..677142- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006085 ID=TCONS_00006085|Name=TCONS_00006085|organism=Clytia hemisphaerica|type=transcript|length=21461bp|location=Sequence derived from alignment at sc0000062:655682..677142- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000062:655682..677142- >TCONS_00006085 ID=TCONS_00006085|Name=TCONS_00006085|organism=Clytia hemisphaerica|type=CDS|length=13101bp|location=Sequence derived from alignment at sc0000062:655682..677142- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006085 vs. Swiss-Prot (Human)
Match: MP2K7 (Dual specificity mitogen-activated protein kinase kinase 7 OS=Homo sapiens GN=MAP2K7 PE=1 SV=2) HSP 1 Score: 410.609 bits (1054), Expect = 1.057e-135 Identity = 203/400 (50.75%), Postives = 272/400 (68.00%), Query Frame = 1
Query: 73 FEQDGDKMAAAIP-ENKSLQERINALSIQLEAEEKRPSLNLDLNSTSEXXXXXXXXXXXXXXDLQAPPRHGRENRKFENLTFSREKRKSERTVAIERQLQELTKKSSILAIEGEKYPFKIEDLKLLEEIGSGTCGVVNKMFHPATNTTMAVKTMDRTPIMEEQKRILMDLDVITRCNDCPYIVNCFGLFISQSEVFVCMELMGTCLEKLLRTTKTPVPEPILGKISVSVVRALQYLKSEHGVMHRDIKPSNILLDEKGNVKLCDFGIAGRLVDSKAKTKGAGCAAYMSPERVEPPDPRNPDYDVRADVWSLGISLVELAVGYFPYTNCSSEFEVLMKIMHDPAPSLPPNQGFSEEFQSFINVCLEKDMAKRPKFDLLLEHPFLIRYSREEVDVVGWYSNV 1269
EQ ++ A + EN+ + RI+ L++ + + RP+L L L + PP R + F+ +S ++ I+++LQE+ K++ L I G++Y +I DL+ L E+GSGTCG V KM T +AVK M R+ EE KRILMDLDV+ + +DCPYIV CFG FI+ ++VF+ MELMGTC EKL + + P+PE ILGK++V++V+AL YLK +HGV+HRD+KPSNILLDE+G +KLCDFGI+GRLVDSKAKT+ AGCAAYM+PER++PPDP PDYD+RADVWSLGISLVELA G FPY NC ++FEVL K++ + P LP + GFS +FQSF+ CL KD KRPK++ LLEH F+ RY EVDV W+ +V
Sbjct: 6 LEQKLSRLEAKLKQENREARRRID-LNLDISPQRPRPTLQLPLANDGGSRSPSSESSPQHP----TPPARPRHMLGLPSTLFTP---RSMESIEIDQKLQEIMKQTGYLTIGGQRYQAEINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAMELMGTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDSKAKTRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKVLQEEPPLLPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLEHSFIKRYETLEVDVASWFKDV 397 The following BLAST results are available for this feature:
BLAST of TCONS_00006085 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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