TCONS_00006061 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006061
Unique NameTCONS_00006061
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1294

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006061 ID=TCONS_00006061|Name=TCONS_00006061|organism=Clytia hemisphaerica|type=transcript|length=1294bp
aaacaaaggaaaatagAATTATCACAAATCTatgaaaattaataaatcat
aaatatgaaaataatacGTTTTACATGTAGAAAGTGTTCAGAAGAAATTG
AGAGGGTAAAGGTTACTTTCTCGGCTCATCGATTTATTTTTTGAGAGCAG
AGCAGAGtgtgtttaaaatattttcataaacttgGTATGCACACAATATG
ACAACTTTTGAAAATACATTTCTTACAACAGAGGAGGAATATGAACACCA
ACCAGATCACGACGATGTCGAAGTTGCTGCAGGAAAAATCACCAAATGGG
TTGAAGGAGACTTAAGATTGAAGAATGACATTAAACGGAACGAACATTTG
AGAACTTTATTGAAGAAGTATCAAGAAGAATTGAAAGCATTAATGATCCA
AGATGATAGTAAATATcggaaagaaattaaaatggaaaGAAAGTATCAAG
AAAAGAAATTGaataGATTAATGGTCCACGAGGCAAAACAAGTTGAATCC
AGAAGTTGGGATTTCGAGAAAAGTGATCCGAGGGTTGAAGATCTTGTCAA
GAAAATCAAGGAATTCAAATTGCATTTTGACAAAGACCGATCACAGGCTA
AAAAGAGGATGATTACAGGACATAAAGAAGCAAGCCGGTTGAAATTGAAA
TGCGTTCAAGAACAAAATAAACACGTGTTGAAGTATCTTGATAGAGATTG
GCAACGAAAAATTGAGGACTCTTGGAGACGAATTGAATCTCAATTGTTGT
ATATGCATGAAAAGGAAGTCAAGGAGaagaacgaaaaagaagaaaaaatt
cgtCAAAACAAATTGAACGCTAGACAAAATGAACTACAGCCTTCGTTAGA
TTTACGATTAAATGCTCGACGAGAAATTATTGACGAAAATCAGCAACTAC
TTCAAGATGTCACTGCTTTGAGAATCAAACATTCAACAGCGGCGGATTTA
CTCTACAAATTGAAATCGACTTTCGAACTATTTATTGGAGAGACTAAACA
AGCGGATGCGATTGAAGCCAATAAACTGGCAACGCAATTAATTGATTATA
AAAAGACTTCTTTTATCGAAGTTGATAATAATGACTGACCAATAGTAAAA
CAGCCAATTGCAGAACGAAACCATAGTGGGTGGAACTtgtggcttttaga
atcgcaccatCTACATACAGAGTGAAGCAAAAAGTCTGTAGAATTTGTAC
CTTTTCAGTGGATTGAattcagtttttcaaaaaataagtctttcttacaa
aaaatgctGGTTTCTCCTGGATTTCTACCCGCTGtgaatttttt
Run BLAST on NCBI

protein sequence of TCONS_00006061-protein

>TCONS_00006061-protein ID=TCONS_00006061-protein|Name=TCONS_00006061-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
MTTFENTFLTTEEEYEHQPDHDDVEVAAGKITKWVEGDLRLKNDIKRNEH
LRTLLKKYQEELKALMIQDDSKYRKEIKMERKYQEKKLNRLMVHEAKQVE
SRSWDFEKSDPRVEDLVKKIKEFKLHFDKDRSQAKKRMITGHKEASRLKL
KCVQEQNKHVLKYLDRDWQRKIEDSWRRIESQLLYMHEKEVKEKNEKEEK
IRQNKLNARQNELQPSLDLRLNARREIIDENQQLLQDVTALRIKHSTAAD
LLYKLKSTFELFIGETKQADAIEANKLATQLIDYKKTSFIEVDNND
Run BLAST on NCBI

transcript from alignment at sc0000062:294490..298385-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006061 ID=TCONS_00006061|Name=TCONS_00006061|organism=Clytia hemisphaerica|type=transcript|length=3896bp|location=Sequence derived from alignment at sc0000062:294490..298385- (Clytia hemisphaerica)
AAACAAAGGAAAATAGAATTATCACAAATCTATGAAAATTAATAAATCAT
AAATATGAAAATAATACGTTTTACATGTAGAAAGTGTTCAGAAGAAATTG
AGAGGGTAAAGGTTACTTTCTCGGCTCATCGATTTATTTTTTGAGAGCAG
AGCAGAGTGTGTTTAAAATATTTTCATAAACTTGGTATGCACACAATATG
ACAACTTTTGAAAATACATTTCTTACAACAGAGGAGGAATATGAACACCA
ACCAGATCACGACGATGTCGAAGGTAGGATTTGTATATTTCTCTTGTATT
TGAAGTAGAAACTTATTTCCTTAGGACAATGCACGAAGAATAAATTACAT
TATACAAAAACAAAGACTTCGATAGCTAAAATATTGAGAAAAAGTTAAGA
ACATTTTAAGAACATTTTGAACGTTTTTATATAAAAAACGTGTTTGAGCC
TATCCGCAAAGTTTTCGCGAAGACTAGGGTATTTTTGCGATTTTGAGTCA
TTTATAAGCGTTAAGAATCGGTAGTATCCTTTTTTAAATAAAGCTTTGGC
AAATCATTCAAACATCCCCTTTGTTTATCTCATTTTCAAGTTGCTGCAGG
AAAAATCACCAAATGGGTTGAAGGAGACTTAAGATTGAAGAATGACATTA
AACGGAACGAACATTTGAGAACTTTATTGAAGAAGTATCAAGAAGAATTG
AAAGCATTAATGATCCAAGATGATAGTAAATATCGGAAAGAAATTAAAAT
GGAAAGAAAGTATCAAGAAAAGAAATTGGTAAGGATACATTCTGTCAAGA
GATTTTTATAGTACACGTTTTTTATTGAACAAACTTTATAAAAACAAGGC
TTCGATGGGCAAAAAATACTCACAAAATGGTGAAATTAGACCATATTAAG
AACATCCAAAGGCTTGAAAAATTTAGGATGTTCTTGTAAAAAACGTGTAT
TGTAAGAAGCTTATAGACATTTCAGAATCTTCGCAGTGCCGTGTTCTTCG
TGAACTATGATCAGAGGATGTGGAAATTGACTAAAAAGAATCGACATTCA
TTTCTTTAAAATATCAAAGTAGTTTGAAGTAGAGCTGATAGTATAATGTT
TAAAAAAGGACTTGGTTTCTTCGCATTAACCACTAGCCCTGATTGTTTTT
TAAGTCAAAAGCACACTGTTTGTCAACAACCAAATTGTGGATGCTCAGGG
GGGCGCGGTTCTACTGTGAAAGTGATAGGGCCACTGACTAAGGAGGCGTC
ATCATCGTTGGAGCCAACGGACGAAAACTTTTGAATTTTAACCCTTCTAG
ATCTTCTAAAACAGGTCTTTTTTTAAGGTTATTAAAAAGAATTTAGCTTG
ATTAGTAAATTTTCTTTTTGCTTTGAAAAAATGTGGTCGGGCCAAGGCTC
GACTGACACCCCCCTCCACCCGCTGCTGCGGCGCTTGATGCTTTTCCATT
ACTCTCTTCCAAGCAAAAGTTATTACACATTGTGAAGTTTCAGCACCATA
CGGGAGAGACAGTTTTTATGAAAATATATACAATCAATGCTTTCTAATTC
GACATTCTTCCATCCCACTCCATTAGTCGGTAATATTGAAAGTTACCGTC
AACAAGAAACTCTCATAAACGACACTTCTATCCGATACGTTCCGACCATG
CTCAGTGAAAATCCAATTCCCTTCGATAATCTCTTTAGAGAGCGTCAACT
GTAAAATTCTGGAAAGGTTTGTTTCATCGTTTTCTAATGGTTTCTTTTTT
AATTTTTCAGAATAGATTAATGGTCCACGAGGCAAAACAAGTTGAATCCA
GAAGTTGGGATTTCGAGAAAAGTGATCCGAGGGTTGAAGATCTTGTCAAG
AAAATCAAGGAATTCAAATTGCATTTTGACAAAGACCGATCACAGGCTAA
AAAGAGGATGATTACAGGACATAAAGAAGCAAGCCGGTTGAAATTGAAAT
GCGTTCAAGAACAAAATAAACACGTGTTGAAGTATCTTGATAGAGATTGG
CAACGAAAAATTGAGGTAAATTATCATGTGTTTTTCAATATAATATATTT
TCAATGCCAAGCTAATACCTAGTCCCTTCTTTTATGATATGATGCAGGTT
TGTACGATAAGTAAGGCTCGCGGTGGCGAAAATTTGAGAATTCCATTTCT
TTATTTGTCTACCGGGTTGGCATCACTTACCCGTGATCCGCCTCTTCAGT
TGCTGAGCATCAATCAGAGAGGCATCAAGTACCATTTTGGGAGATAATTT
GGCTGGGCCCACTTTACGCACCGTAGCTGGATGCTCTACCTTCATTCTAT
GACCGCTTTAATTACTTACAAAACTGCGTAAAATGTTTGCCCTCAGTTCA
TCATACGTTTGACCATTGATTGATTTGACCTTTCTAGGACTCTTGGAGAC
GAATTGAATCTCAATTGTTGTATATGCATGAAAAGGAAGTCAAGGAGAAG
AACGAAAAAGAAGAAAAAATTCGTCAAAACAAATTGAACGCTAGACAAAA
TGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAC
CGTCAACAAGAAACTCTCATAAACGACACTTCTATCCGATACGTTCCGAC
CATGCTCAGTGAAAATCCAATTCCCTTCGATAATCTCTTTAGAGAGCGTC
AACTGTAAAATTCTGGAAAGGTTTGTTTCATCGTTTTCTAATGGTTTCTT
TTTTAATTTTTCAGAATAGATTAATGGTCCACGAGGCAAAACAAGTTGAA
TCCAGAAGTTGGGATTTCGAGAAAAGTGATCCGAGGGTTGAAGATCTTGT
CAAGAAAATCAAGGAATTCAAATTGCATTTTGACAAAGACCGATCACAGG
CTAAAAAGAGGATGATTACAGGACATAAAGAAGCAAGCCGGTTGAAATTG
AAATGCGTTCAAGAACAAAATAAACACGTGTTGAAGTATCTTGATAGAGA
TTGGCAACGAAAAATTGAGGTAAATTATCATGTGTTTTTCAATATAATAT
ATTTTCAATGCCAAGCTAATACCTAGTCCCTTCTTTTATGATATGATGCA
GGTTTGTACGATATTTGAGAATTCCATTTCTTTATTTGTCTACCGGGTTG
GCATCACTTACCCGTGATCCGCCTCTTCAGTTGTTGAGCATCAATCAGAG
AGGCATCAAGTACCATTTTGGGAGATAATTTGGCTGGGCCCACTTTACGC
ACCGTAGCTGGATGCTCTACCTTCATTCTATGACCGCTTTAATTACTTAC
AAAACTGCGTAAAATGTTTGCCCTCAGTTCATCATACGTTTGACCATTGA
TTGATTTGACCTTTCTAGGACTCTTGGAGACGAATTGAATCTCAATTGTT
GTATATGCATGAAAAGGAAGTCAAGGAGAAGAACGAAAAAGAAGAAAAAA
TTCGTCAAAACAAATTGAACGCTAGACAAAATGAACTACAGCCTTCGTTA
GATTTACGATTAAATGCTCGACGAGAAATTATTGACGAAAATCAGCAACT
ACTTCAAGATGTCACTGCTTTGAGAATCAAACATTCAACAGCGGCGGATT
TACTCTACAAATTGAAATCGACTTTCGAACTATTTATTGGAGAGACTAAA
CAAGCGGATGCGATTGAAGCCAATAAACTGGCAACGCAATTAATTGATTA
TAAAAAGACTTCTTTTATCGAAGTTGATAATAATGACTGACCAATAGTAA
AACAGCCAATTGCAGAACGAAACCATAGTGGGTGGAACTTGTGGCTTTTA
GAATCGCACCATCTACATACAGAGTGAAGCAAAAAGTCTGTAGAATTTGT
ACCTTTTCAGTGGATTGAATTCAGTTTTTCAAAAAATAAGTCTTTCTTAC
AAAAAATGCTGGTTTCTCCTGGATTTCTACCCGCTGTGAATTTTTT

Coding sequence (CDS) from alignment at sc0000062:294490..298385-

>TCONS_00006061 ID=TCONS_00006061|Name=TCONS_00006061|organism=Clytia hemisphaerica|type=CDS|length=3564bp|location=Sequence derived from alignment at sc0000062:294490..298385- (Clytia hemisphaerica)
GACTCTTGGAGACGAATTGAATCTCAATTGTTGTATATGCATGAAAAGGA
AGTCAAGGAGAAGAACGAAAAAGAAGAAAAAATTCGTCAAAACAAATTGA
ACGCTAGACAAAATGAACTACAGCCTTCGTTAGATTTACGATTAAATGCT
CGACGAGAAATTATTGACGAAAATCAGCAACTACTTCAAGATGTCACTGC
TTTGAGAATCAAACATTCAACAGCGGCGGATTTACTCTACAAATTGAAAT
CGACTTTCGAACTATTTATTGGAGAGACTAAACAAGCGGATGCGATTGAA
GCCAATAAACTGGCAACGCAATTAATTGATTATAAAAAGACTTCTTTTAT
CGAAGTTGATAATAATGACTGAAATAGATTAATGGTCCACGAGGCAAAAC
AAGTTGAATCCAGAAGTTGGGATTTCGAGAAAAGTGATCCGAGGGTTGAA
GATCTTGTCAAGAAAATCAAGGAATTCAAATTGCATTTTGACAAAGACCG
ATCACAGGCTAAAAAGAGGATGATTACAGGACATAAAGAAGCAAGCCGGT
TGAAATTGAAATGCGTTCAAGAACAAAATAAACACGTGTTGAAGTATCTT
GATAGAGATTGGCAACGAAAAATTGAGTTGCTGCAGGAAAAATCACCAAA
TGGGTTGAAGGAGACTTAAGATTGAAGAATGACATTAAACGGAACGAACA
TTTGAGAACTTTATTGAAGAAGTATCAAGAAGAATTGAAAGCATTAATGA
TCCAAGATGATAGTAAATATCGGAAAGAAATTAAAATGGAAAGAAAGTAT
CAAGAAAAGAAATTGATGACAACTTTTGAAAATACATTTCTTACAACAGA
GGAGGAATATGAACACCAACCAGATCACGACGATGTCGAAGGACTCTTGG
AGACGAATTGAATCTCAATTGTTGTATATGCATGAAAAGGAAGTCAAGGA
GAAGAACGAAAAAGAAGAAAAAATTCGTCAAAACAAATTGAACGCTAGAC
AAAATGAACTACAGCCTTCGTTAGATTTACGATTAAATGCTCGACGAGAA
ATTATTGACGAAAATCAGCAACTACTTCAAGATGTCACTGCTTTGAGAAT
CAAACATTCAACAGCGGCGGATTTACTCTACAAATTGAAATCGACTTTCG
AACTATTTATTGGAGAGACTAAACAAGCGGATGCGATTGAAGCCAATAAA
CTGGCAACGCAATTAATTGATTATAAAAAGACTTCTTTTATCGAAGTTGA
TAATAATGACTGAAATAGATTAATGGTCCACGAGGCAAAACAAGTTGAAT
CCAGAAGTTGGGATTTCGAGAAAAGTGATCCGAGGGTTGAAGATCTTGTC
AAGAAAATCAAGGAATTCAAATTGCATTTTGACAAAGACCGATCACAGGC
TAAAAAGAGGATGATTACAGGACATAAAGAAGCAAGCCGGTTGAAATTGA
AATGCGTTCAAGAACAAAATAAACACGTGTTGAAGTATCTTGATAGAGAT
TGGCAACGAAAAATTGAGTTGCTGCAGGAAAAATCACCAAATGGGTTGAA
GGAGACTTAAGATTGAAGAATGACATTAAACGGAACGAACATTTGAGAAC
TTTATTGAAGAAGTATCAAGAAGAATTGAAAGCATTAATGATCCAAGATG
ATAGTAAATATCGGAAAGAAATTAAAATGGAAAGAAAGTATCAAGAAAAG
AAATTGATGACAACTTTTGAAAATACATTTCTTACAACAGAGGAGGAATA
TGAACACCAACCAGATCACGACGATGTCGAAGGACTCTTGGAGACGAATT
GAATCTCAATTGTTGTATATGCATGAAAAGGAAGTCAAGGAGAAGAACGA
AAAAGAAGAAAAAATTCGTCAAAACAAATTGAACGCTAGACAAAATGAAC
TACAGCCTTCGTTAGATTTACGATTAAATGCTCGACGAGAAATTATTGAC
GAAAATCAGCAACTACTTCAAGATGTCACTGCTTTGAGAATCAAACATTC
AACAGCGGCGGATTTACTCTACAAATTGAAATCGACTTTCGAACTATTTA
TTGGAGAGACTAAACAAGCGGATGCGATTGAAGCCAATAAACTGGCAACG
CAATTAATTGATTATAAAAAGACTTCTTTTATCGAAGTTGATAATAATGA
CTGAAATAGATTAATGGTCCACGAGGCAAAACAAGTTGAATCCAGAAGTT
GGGATTTCGAGAAAAGTGATCCGAGGGTTGAAGATCTTGTCAAGAAAATC
AAGGAATTCAAATTGCATTTTGACAAAGACCGATCACAGGCTAAAAAGAG
GATGATTACAGGACATAAAGAAGCAAGCCGGTTGAAATTGAAATGCGTTC
AAGAACAAAATAAACACGTGTTGAAGTATCTTGATAGAGATTGGCAACGA
AAAATTGAGTTGCTGCAGGAAAAATCACCAAATGGGTTGAAGGAGACTTA
AGATTGAAGAATGACATTAAACGGAACGAACATTTGAGAACTTTATTGAA
GAAGTATCAAGAAGAATTGAAAGCATTAATGATCCAAGATGATAGTAAAT
ATCGGAAAGAAATTAAAATGGAAAGAAAGTATCAAGAAAAGAAATTGATG
ACAACTTTTGAAAATACATTTCTTACAACAGAGGAGGAATATGAACACCA
ACCAGATCACGACGATGTCGAAGGACTCTTGGAGACGAATTGAATCTCAA
TTGTTGTATATGCATGAAAAGGAAGTCAAGGAGAAGAACGAAAAAGAAGA
AAAAATTCGTCAAAACAAATTGAACGCTAGACAAAATGAACTACAGCCTT
CGTTAGATTTACGATTAAATGCTCGACGAGAAATTATTGACGAAAATCAG
CAACTACTTCAAGATGTCACTGCTTTGAGAATCAAACATTCAACAGCGGC
GGATTTACTCTACAAATTGAAATCGACTTTCGAACTATTTATTGGAGAGA
CTAAACAAGCGGATGCGATTGAAGCCAATAAACTGGCAACGCAATTAATT
GATTATAAAAAGACTTCTTTTATCGAAGTTGATAATAATGACTGAAATAG
ATTAATGGTCCACGAGGCAAAACAAGTTGAATCCAGAAGTTGGGATTTCG
AGAAAAGTGATCCGAGGGTTGAAGATCTTGTCAAGAAAATCAAGGAATTC
AAATTGCATTTTGACAAAGACCGATCACAGGCTAAAAAGAGGATGATTAC
AGGACATAAAGAAGCAAGCCGGTTGAAATTGAAATGCGTTCAAGAACAAA
ATAAACACGTGTTGAAGTATCTTGATAGAGATTGGCAACGAAAAATTGAG
TTGCTGCAGGAAAAATCACCAAATGGGTTGAAGGAGACTTAAGATTGAAG
AATGACATTAAACGGAACGAACATTTGAGAACTTTATTGAAGAAGTATCA
AGAAGAATTGAAAGCATTAATGATCCAAGATGATAGTAAATATCGGAAAG
AAATTAAAATGGAAAGAAAGTATCAAGAAAAGAAATTGATGACAACTTTT
GAAAATACATTTCTTACAACAGAGGAGGAATATGAACACCAACCAGATCA
CGACGATGTCGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003451XLOC_003451Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006061-exon-sc0000062-1575043694:298113..298385TCONS_00006061-exon-sc0000062-1575043694:298113..298385Clytia hemisphaericaexon
TCONS_00006061-exon-sc0000062-1575043694:297608..297795TCONS_00006061-exon-sc0000062-1575043694:297608..297795Clytia hemisphaericaexon
TCONS_00006061-exon-sc0000062-1575043694:295417..295671TCONS_00006061-exon-sc0000062-1575043694:295417..295671Clytia hemisphaericaexon
TCONS_00006061-exon-sc0000062-1575043694:294490..295067TCONS_00006061-exon-sc0000062-1575043694:294490..295067Clytia hemisphaericaexon
TCONS_00006061-exon-sc0000062-1510915933:298113..298385TCONS_00006061-exon-sc0000062-1510915933:298113..298385Clytia hemisphaericaexon
TCONS_00006061-exon-sc0000062-1510915933:297608..297795TCONS_00006061-exon-sc0000062-1510915933:297608..297795Clytia hemisphaericaexon
TCONS_00006061-exon-sc0000062-1510915933:295417..295671TCONS_00006061-exon-sc0000062-1510915933:295417..295671Clytia hemisphaericaexon
TCONS_00006061-exon-sc0000062-1510915933:294490..295067TCONS_00006061-exon-sc0000062-1510915933:294490..295067Clytia hemisphaericaexon
TCONS_00006061-exon-sc0000062-1491911889:298113..298385TCONS_00006061-exon-sc0000062-1491911889:298113..298385Clytia hemisphaericaexon
TCONS_00006061-exon-sc0000062-1491911889:297608..297795TCONS_00006061-exon-sc0000062-1491911889:297608..297795Clytia hemisphaericaexon
TCONS_00006061-exon-sc0000062-1491911889:295417..295671TCONS_00006061-exon-sc0000062-1491911889:295417..295671Clytia hemisphaericaexon
TCONS_00006061-exon-sc0000062-1491911889:294490..295067TCONS_00006061-exon-sc0000062-1491911889:294490..295067Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006061-proteinTCONS_00006061-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:294490..298385 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.03	0.372004	0.172773	0.036221	57.824	39.9613	23.4928	24.8404	13.4052	15.7683	19.17	9.65444	0.3262	0.203257	0	0	0.429565	0.733816	0.324418	0.636526	1.65977	1.04088	2.69926	1.82923	2.00694	2.52222	19.5634	18.5898	0.677463	1.33732
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006061 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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