TCONS_00006060 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006060
Unique NameTCONS_00006060
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006060 ID=TCONS_00006060|Name=TCONS_00006060|organism=Clytia hemisphaerica|type=transcript|length=1469bp
caaaaaataataaatatccATGCAATTTGACAAGGACATTTATATGAAAC
AGAACCACCAGGAAAGATATATCTTATTTGTCGATACTATAGAAAGACCA
TAATATCGTTTTAGAAGAATCAACAAGAAAGACCATATTGATCAACGGTG
ACGTCACCACCACACCAAACGACCACCAGAGATGGATAATTCCATCGAAG
TTTTCAACTGTCCATTGTGTTCATTCTGTGAGACAGGACTTGATCGTTTG
GTCAAACATATCCGTCAACACATCAAACCGGAACCAAGACCAATCTCTCA
ACTTGATGTTGTTACCACTGATGATTCTCCGATTCTACCAAGAGATCAGG
AAGAGTCGAACCAACACAAGGAGAATCGTCTTGACGGTTACATCACCAAT
TTGTCCTCTAAAGAGAATCCACATCCACCATTGACCAATTTATTCTCGTC
TACTGGCAATGACGAAGATGAGGAAATGCCATCACCAAAGATTGGCGAGG
TTCAATCTCTAACAGAACCCAAGAAACCAGATTCAATACCATCATCAGAA
TTTCAACATTCTAAACCACCGCCAGCCCAACAACCTCATATTCAGTTGAC
TGCATTACCAAATGATTTACCATCTCCCCATATGTTGAATGCGGAGGTCC
AACCCATGTTACACCCAATACAAATCTCGCCTCCAGgcGTGCAACCACAA
CCAGCCATGCCTCCTCATTCAGCTATGATGTACATCCGTAAGGAGCCGTC
CAAATACGTCAAACTACATCCAAACTATACACATGCACCACAGTACAAAC
CGTTCGTCCACGCTGAACAATACATACCAATCGCACCAGCCAAACCAGGA
AATTATCAGGACGGTAAAGTAGTTCCAATGGAGATTCATGAAGCCTACCA
TAGACCGCCACCGCCCCAAGCTAATCATCAGTATCCCGCCCAACCACATC
ATCAACGCGGAAAACCAGGCCCAAGACCTATGGAGATCCACACTGCTTAC
CAAGTTCAACCCAACTACCATCCTCCGCCCCAGCAGCATTATGCTTCGCA
CCAGAGACCGCCCAAAGGACACCCTCATCATCATCAACAACCAGTTTTCC
AAACTCAACTTCAAACTCGCGTTGAAACCGCCCAACAAAGTATACCAATG
CCTCATGTTGGATTCCCTAATAACGGACAAATGTACATTAGCCCAGAACA
ATTAATGAAAATGACAGGGAATCCAGCCTCGCTTGACCAACTGGCTGGTA
TGCTTGTGATCCCTTTAAAAAAGACAGCCGAAGTCGCCATCCAAACAGAT
CCGGTTGAATTCAACGCTCCAACAAAGAAAAAGGAGAAATCTGAAGTTTC
ATCTTCTGTACAAACTGATTTAAAAATGCAATTTATTACAGAGGCTTCTC
GGTATGCACCGGAAACGATTTTCGGTCAAATTCGTTCGTTGGATTCGTTA
TTCGAGTGTTTGATATGTG
Run BLAST on NCBI

transcript from alignment at sc0000062:270209..274416-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006060 ID=TCONS_00006060|Name=TCONS_00006060|organism=Clytia hemisphaerica|type=transcript|length=4208bp|location=Sequence derived from alignment at sc0000062:270209..274416- (Clytia hemisphaerica)
CAAAAAATAATAAATATCCATGCAATTTGACAAGGACATTTATATGAAAC
AGAACCACCAGGAAAGATATATCTTATTTGTCGATACTATAGAAAGACCA
TAATATCGTTTTAGAAGGTAAGACCTTTTTTAATTACATTGTAAAATGTT
GTTTGTCTCATCTACACCAGTTTTCTCGTACACCCTTGTCTCAAAATTGA
TTCGGGTTCACTTATAATGTCCTTGATTTTCAATTGGGAGAAAATCTTTT
GGGCAAGAATTGATAGGGATTCTTTGATACTGTGCTTGCTTGCTTTGCTT
GAGTAAATCACTCGCGCTCAGAAGCTCCTTTTATATTCACCCCAAATCTG
GATAAAAAAGACCAAAGCGGTTCGCAAACCAGGACAGATTCTCTTACGGT
GCTATGGTCTTTAGAATGAATACTTGAAATGTCCCGAGTCCTCAGAACCT
GCTCGGAGATATAGCATGAATCTTGTTCTATTTGAAGACTGGTAGACTTG
AAAACCATCATAATGTTTTTGATAACAACTGTTAAATATAATTCCATCTC
CGATTAAAAATACTTCTGATACCATTATGATGATGGTGTCGTTATTGACA
ATAGAATAAGATTCAAGTTTGTTATGTCAAATCTGTATGTTCACATTTGG
AGATATTTGATCTAACGATGACAGCTTATAATTGTTCTGTTTCTTTGTTG
ATATGAAATGTGAATTGAGGTCTGTTTGAATGGTGTTGTTACTGCAATCT
GTCGCTCTTTTACGTGTTGGAGATTGTTCAAGGAGTGTTGATTTTGCACT
GACAGGATATTTCTTGGTGATCTTTTTTTATCAATCATTTTTCAAGCTAT
ATTCTATGTTTGTTATTGTTTATGGTGAATGTTTAAGAATCGAACAGGTT
TTATTACCTTCGATACGTATTATTTTTCGTACTTTCAAAACACGTGTAGA
TTATAGCCTCGTTTTTGATTACCCAATCTTTTTTTTGCAAAAGTTTATTT
TGCCAAACTTTTAGACAATTATATCCTTCACTTTGGTCCTTCCAGGCTTA
GGCGGTGTAATTAATCTACTCAGTTTTCTCAACTTACTTCCTCTCATTTA
ACATAAGTTTCCTTCAAAGGAAGACTTGGGAAACATGCATTATGTATAAA
AAATCTCATACTGACTTTAAAAGCTAGCGTACTTGACTGGTACCAATATA
TCAACGAGGAAAAGCGGGCTTCTCCCAAACGATAAGGACCCAATATACTT
GTGGAAACGGAGATAGCATTGCATTTGTGAAGACCCTTTTTAAAGTTTAA
CCTTCTGTAGAAATGACATGGTTCTGTTTTTCTCCGGACTTCCTTGATAG
CATTTGTATGTTATATCTTATTGAACTTCACTGCCACAAGTCAACATATT
ACTGTGAGGCGCATTCTTGACAATATCTATGTGGAAAAGATCTTGAATCT
TGAAAAGCTTGAACATAATGGCGAAAATATGCTTTGTTTAAGATTGATCT
TTTGGTTTAAGCTGATTCAGTCGGTGTTGTGAAGGGCCACAACGATTTCC
TAACTTAAGTTTCTTTTCATTTCTTTCCACAGAATCAACAAGAAAGACCA
TATTGATCAACGGTGACGTCACCACCACACCAAACGACCACCAGAGATGG
ATAATTCCATCGAAGTTTTCAACTGTCCATTGTGTTCATTCTGTGAGACA
GGACTTGATCGTTTGGTCAAACATATCCGTCAACACATCAAACCGGAACC
AAGACCAATCTCTCAACTTGATGTTGTTACCACTGATGATTCTCCGATTC
TACCAAGAGATCAGGAAGAGTCGAACCAACACAAGGAGAATCGTCTTGAC
GGTTACATCACCAATTTGTCCTCTAAAGAGAATCCACATCCACCATTGAC
CAATTTATTCTCGTCTACTGGCAATGACGAAGATGAGGAAATGCCATCAC
CAAAGATTGGCGAGGTTCAATCTCTAACAGAACCCAAGAAACCAGATTCA
ATACCATCATCAGAATTTCAACATTCTAAACCACCGCCAGCCCAACAACC
TCATATTCAGTTGACTGCATTACCAAATGATTTACCATCTCCCCATATGT
TGAATGCGGAGGTCCAACCCATGTTACACCCAATACAAATCTCGCCTCCA
GGTAAGCATCGACTTATTTCCTTTCCTTTTCACTGTCTCAGTGACCTTGT
GGAAATAAAAAGGAGGGATAAATTGAAAGAACTAAGACTGATAGGGATAG
GGATAGAAAATTGCCTGCTTTTATTCCACGCCTACCGGTTCGCCCGACCA
AAACTTGCACGACTCGTGGTCAGGCTCTCTGAAAATGTCATATTTTAACA
CCGCTATTTATTTTATTTTAAGGCGTGCAACCACAACCAGCCATGCCTCC
TCATTCAGCTATGATGTACATCCGTAAGGAGCCGTCCAAATACGTCAAAC
TACATCCAAACTATACACATGCACCACAGTACAAACCGTTCGTCCACGCT
GAACAATACATACCAATCGCACCAGCCAAACCAGGAAATTATCAGGACGG
TAAAGTAGTTCCAATGGAGATTCATGAAGCCTACCATAGACCGCCACCGC
CCCAAGCTAATCATCAGTATCCCGCCCAACCACATCATCAACGCGGAAAA
CCAGGCCCAAGACCTATGGAGATCCACACTGCTTACCAAGTTCAACCCAA
CTACCATCCTCCGCCCCAGCAGCATTATGCTTCGCACCAGAGACCGCCCA
AAGGACACCCTCATCATCATCAACAACAACCAGTCNACACATCAAACCGG
AACCAAGACCAATCTCTCAACTTGATGTTGTTACCACTGATGATTCTCCG
ATTCTACCAAGAGATCAGGAAGAGTCGAACCAACACAAGGAGAATCGTCT
TGACGGTTACATCACCAATTTGTCCTCTAAAGAAAATCCACATCCACCAA
TGACCAATTTATTCTCGTCTACTGGCAATGACGAAGATGAGGAAATGCAA
TCACCAAAGATTGGCGAGGTTCAATCTCTAACAGAACCCAAGAAACCAGA
TTCAATACCATCATCAGAATTTCAACATTCTAAACCACCGCCAGCCCAAC
AACCTCATATTCAGTTGACTGCATTACCAAATGATTTACCATCTCCCCAT
ATGTTGAATGCGGAGGTCCAACCCATGTTACACCCAATACAAATCTCGCC
TCCAGGTAAGCATCGACTTATTTCCTTTCCTTTTCACTCCACTGTTTCAG
TGAACTGGTGGAAATAAAAAGGAGGGATAAATTGAAAGAACTAAGACTGA
TAGGGATAGAAAATCGCCTGTTTTTATTCCACGCCTACCGGTTCGCCCAA
CCAAAAATTGCACGACTCGTGGCCAGGCTCTCTGAAAATGTCATATTTTA
ACACCGCTATTTATTTTATTTTAAGGCGTGCAACCACAACCAGCCATGCC
TCCTCATTCAGCTATGATGTACATCCGTAAGGAGCCGTCCAAATACGTCA
AACTACATCCAAACTATACACATGCACCACAGTACAAACCGTTCGTCCAC
GCTGAACAATACATACCAATCGCACCAGCCAAACCAGGAAATTATCAGGA
CGGTAAAGTAGTTCCAATGGAGATTCATGAAGCCTACCATAGACCGCCAC
CGCCCCAAGCTAATCATCAGTATCCCGCCCAACCACATCATCAACGCGGA
AAACCAGGCCCAAGACCTATGGAGATCCACACTGCTTACCAAGTTCAACC
CAACTACCATCCTCCGCCCCAGCAGCATTATGCTTCGCACCAGAGACCGC
CCAAAGGACACCCTCATCATCATCAACAACCAGTTTTCCAAACTCAACTT
CAAACTCGCGTTGAAACCGCCCAACAAAGTATACCAATGCCTCATGTTGG
ATTCCCTAATAACGGACAAATGTACATTAGCCCAGAACAATTAATGAAAA
TGACAGGGAATCCAGCCTCGCTTGACCAACTGGCTGGTATGCTTGTGATC
CCTTTAAAAAAGACAGCCGAAGTCGCCATCCAAACAGATCCGGTTGAATT
CAACGCTCCAACAAAGAAAAAGGAGAAATCTGAAGTTTCATCTTCTGTAC
AAACTGATTTAAAAATGCAATTTATTACAGAGGCTTCTCGGTATGCACCG
GAAACGATTTTCGGTCAAATTCGTTCGTTGGATTCGTTATTCGAGTGTTT
GATATGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003450XLOC_003450Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006060-exon-sc0000062-1575043694:274300..274416TCONS_00006060-exon-sc0000062-1575043694:274300..274416Clytia hemisphaericaexon
TCONS_00006060-exon-sc0000062-1575043694:272266..272834TCONS_00006060-exon-sc0000062-1575043694:272266..272834Clytia hemisphaericaexon
TCONS_00006060-exon-sc0000062-1575043694:270209..270991TCONS_00006060-exon-sc0000062-1575043694:270209..270991Clytia hemisphaericaexon
TCONS_00006060-exon-sc0000062-1510915933:274300..274416TCONS_00006060-exon-sc0000062-1510915933:274300..274416Clytia hemisphaericaexon
TCONS_00006060-exon-sc0000062-1510915933:272266..272834TCONS_00006060-exon-sc0000062-1510915933:272266..272834Clytia hemisphaericaexon
TCONS_00006060-exon-sc0000062-1510915933:270209..270991TCONS_00006060-exon-sc0000062-1510915933:270209..270991Clytia hemisphaericaexon
TCONS_00006060-exon-sc0000062-1491911889:274300..274416TCONS_00006060-exon-sc0000062-1491911889:274300..274416Clytia hemisphaericaexon
TCONS_00006060-exon-sc0000062-1491911889:272266..272834TCONS_00006060-exon-sc0000062-1491911889:272266..272834Clytia hemisphaericaexon
TCONS_00006060-exon-sc0000062-1491911889:270209..270991TCONS_00006060-exon-sc0000062-1491911889:270209..270991Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:270209..274416 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.132276	0.0608183	0	10.0419	7.48078	2.46285	3.45856	0.113309	2.21443	0.181685	0.984905	0.777595	1.46243	0.152324	0.236021	0.917997	1.05838	0.622396	0	3.28752	1.66945	0	0.528887	3.5162	2.56427	1.03835	0	0.433	0.809633
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006060 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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