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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006054 ID=TCONS_00006054|Name=TCONS_00006054|organism=Clytia hemisphaerica|type=transcript|length=8260bp transcript from alignment at sc0000062:262084..273625- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006054 ID=TCONS_00006054|Name=TCONS_00006054|organism=Clytia hemisphaerica|type=transcript|length=11542bp|location=Sequence derived from alignment at sc0000062:262084..273625- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00006054 vs. Swiss-Prot (Human)
Match: ZN208 (Zinc finger protein 208 OS=Homo sapiens GN=ZNF208 PE=2 SV=2) HSP 1 Score: 127.102 bits (318), Expect = 8.812e-29 Identity = 147/621 (23.67%), Postives = 235/621 (37.84%), Query Frame = 2
Query: 2561 QIRSLDSLFECLICADEFAGNAQLQDHMR---ATHQHVCENC---FHASNSIQEHNA--------HISECGK--------------YDGE--MLCMDCNNCFSSVKKLNQHRIKVHNVRMPFRCGVCNQPFESHPAVMEHMATHDNNAPEFKCRYCTKVFHNAEALNKHFQRHKEVDVEHQCRFCGKSFKTDAFLKDHIGTAHVIRDEIEQVPQPPRVSFRNNQASVSRSQQXXXXXXXXXXXXXXXRKYFLCRYCDLAFKNKELLSRHVKQCSKNGGSDVTTYVCDVCKEFFPTDDARKLHLKNDHRRQNGYRCPKCSKVYRTWTRLKFHTKQQHLKK--NCPDCSAVFTKEHVLRKHREDVHGKSTAEEGDRIYKCSDCNLTLYTLTDLTMHRRTVHPDRKSKTSSAAEFSSNATMLSFIDNQSNNISSTMEEASNKSHPTPPL--------TVIKPKKEPPVNHALNANG----------LDKPYQCERCNSTFDSEKRLKNHLGLTHGERPFVCELCNKRFQYSSQIVWHMKNHQNRP------AGSLTKTAGKLWKPKNFHGKIKSKLPFVCQFCGAAFKAEKLLKNHKGVAHKIKLFTCYICSSKHGHSTELIWH 4255
+I +++ ++C C F +A L H R + CE C F +++ H A ECGK + GE C +C FS L +H++ +H P++C C + F +MEH H P +KC C K F L KH H + ++C CGK++K + L H +I V +P + + +RS + + +T+ K + C C F L+ H K + Y C C + F H K H + Y+C +C K Y+ + L +H K +K C +C F+ +L KH E +H G++ YKC +C L+ + H++T ++ K + + +++ LS+ E K T + T KP K A N + + PY+CE C+ F L H GE+P+ CE C K F + S++ H H G + L + K H K P+ C+ CG +F +L HK + K + C C + S+ L +H
Sbjct: 573 KIHTVEKPYKCEECGKAFNQSAILIKHKRIHTGEKPYKCEECGKTFSKVSTLTTHKAIHAGEKPYKCKECGKTFIKVSTLTTHKAIHAGEKPYKCKECGKAFSKFSILTKHKV-IHTGEKPYKCEECGKAFNWSSNLMEHKRIHTGEKP-YKCEECGKSFSTFSVLTKHKVIH-TGEKPYKCEECGKAYKWSSTLSYH--------KKIHTVEKPYKC--EECGKAFNRS-----AILIKHKRIHTDEKPYKCEECGKTFSKVSTLTTH-----KAIHAGEKPYKCKECGKAFSKFSILTKH-KVIHTGEKPYKCEECGKAYKWPSTLSYHKKIHTGEKPYKCEECGKGFSMFSILTKH-EVIH------TGEKPYKCEECGKAFSWLSVFSKHKKTHAGEKFYKCEACGKAYKSSSTLSYHKKIHTEEKPYKYEECGKGFSTFSILTKHKVIHTGEKPYKCEECGKAFNWSSNLMEHKKIHTGETPYKCEECDKAFSWPSSLTEHKATHAGEKPYKCEECGKAFSWPSRLTEHKATHAGEEPYKCEECGKAFNWSSNLMEHKRIHTGEK---PYKCEECGKSFSTFSILTKHKVIHTGEKPYKCEECGKAYKWSSTLSYH 1159 HSP 2 Score: 115.546 bits (288), Expect = 2.567e-25 Identity = 147/617 (23.82%), Postives = 226/617 (36.63%), Query Frame = 2
Query: 2531 SRYAPETIFGQIRSLDSLFECLICADEFAGNAQLQDHM---RATHQHVCENCFHASNSIQEHNAHIS-----------ECGK--------------YDGE--MLCMDCNNCFSSVKKLNQHRIKVHNVRMPFRCGVCNQPFESHPAVMEHMATHDNNAPEFKCRYCTKVFHNAEALNKHFQRHKEVDVEHQCRFCGKSFKTDAFLKDH--IGTAHVIRDEIEQVPQPPRVSFRNNQASVSRSQQXXXXXXXXXXXXXXXRKYFLCRYCDLAFKNKELLSRHVKQCSKNGGSDVTTYVCDVCKEFFPTDDARKLHLKNDHRRQNGYRCPKCSKVYRTWTRLKFHTKQQHLKK--NCPDCSAVFTKEHVLRKHREDVHGKSTAEEGDRIYKCSDCNLTLYTLTDLTMHRRTVHPDRKSKTSSAAEFSSNATMLSFIDNQSNNISSTMEEASNKSHPTPPLTVIKPKKEPPVNHALNANGLDKPYQCERCNSTFDSEKRLKNHLGLTHGERPFVCELCNKRFQYSSQIVWHMKNHQNRP------AGSLTKTAGKLWKPKNFHGKIKSKLPFVCQFCGAAFKAEKLLKNHKGVAHKIKLFTCYICSSKHGHSTELIWHIR 4261
S+++ T I + + ++C C F +A L H + CE C A + + H + ECGK + GE C +C FS L +H++ +H P++C C + ++ + H H P +KC C K F L KH H + ++C CGK+F + L +H I T E S + ++ + + Y C C AF L H K + Y C+ C + F T H K H + Y+C +C K Y+ + L +H K ++K C +C F + +L KH+ +H G++ YKC +C T ++ LT H+ +H K + +FI + LT K A++A +KPY+C+ C F L H + GE+P+ CE C K F +SS ++ H + H G T L K K H K P+ C+ CG A+K L HK + K + C C S LI H R
Sbjct: 239 SKFSILTKHKVIHTGEKSYKCEECGKAFNQSAILTKHKIIHTGEKPNKCEECGKAFSKVSTLTTHKAIHAGEKPYKCKECGKAFSKVSTLITHKAIHAGEKPYKCKECGKAFSKFSILTKHKV-IHTGEKPYKCEECGKAYKWPSTLSYHKKIHTGEKP-YKCEECGKGFSMFSILTKHEVIH-TGEKPYKCEECGKAFNWSSNLMEHKKIHTGETPYKCEECGKGFSMFSILTKHKVIHNGEKPYKCEECDKATHAGEKPY-KCEECGKAFNWSSNLMEH-----KRIHTGEKPYKCEECGKSFSTFSILTKH-KVIHTGEKPYKCEECGKAYKWSSTLSYHKKIHTVEKPYKCEECGKAFNQSAILIKHKR-IH------TGEKPYKCEECGKTFSKVSTLTTHK-AIHAGEKP-------YKCKECGKTFIKVST-------------------LTTHK---------AIHAG--EKPYKCKECGKAFSKFSILTKHKVIHTGEKPYKCEECGKAFNWSSNLMEHKRIHTGEKPYKCEECGKSFSTFSVLTKHKVIHTGEK---PYKCEECGKAYKWSSTLSYHKKIHTVEKPYKCEECGKAFNRSAILIKHKR 797 HSP 3 Score: 108.227 bits (269), Expect = 4.286e-23 Identity = 138/619 (22.29%), Postives = 241/619 (38.93%), Query Frame = 2
Query: 2531 SRYAPETIFGQIRSLDSLFECLICADEFAGNAQLQDHMR---ATHQHVCENC---FHASNSIQEHNA-HISECGKYDGEMLCMDCNNCFSSVKKLNQHRIKVHNVRMPFRCGVCNQPFESHPAVMEHMATHDNNAPEFKCRYCTKVFHNAEALNKHFQRHKEVDVEHQCRFCGKSFKTDAFLKDH--IGTA---HVIRDEIEQVPQPPRVSFRNNQASVSRSQQXXXXXXXXXXXXXXXR--------KYFLCRYCDLAFKNKELLSRHVKQCSKNGGSDVTTYVCDVCKEFFPTDDARKLHLKNDHRRQNGYRCPKCSKVYRTWTRLK----FHTKQQHLKKNCPDCSAVFTKEHVLRKHREDVHGKSTAEEGDRIYKCSDCNLTLYTLTDLTMHRRTVHPDRKSKTSSAAE-FSSNATMLSFIDNQSNNISSTMEEASNKSHPTPPLTVIKPKKEPPVNHALNANGLDKPYQCERCNSTFDSEKRLKNHLGLTHGERPFVCELCNKRFQYSSQIVWHMKNHQ-NRPAG-----------------SLTKTAGKLWKPKN------------FHGKIKS-KLPFVCQFCGAAFKAEKLLKNHKGVAHKIKLFTCYICS 4219
S+++ T I + + ++C C F ++ L +H R + CE C F + + +H H E C +C + L+ H+ K+H V P++C C + F +++H H + P +KC C K F L H H + ++C+ CGK+F + L H I T + + + P +S+ + + + G ++ S + K + C C AF + S+H K + G Y C+ C + + + H K H + Y+ +C K + T++ L HT ++ K C +C F L +H++ +H G+ YKC +C+ + LT H+ T ++ K + FS + + + EE + + L + H G +KPY+CE C +F + L H + GE+P+ CE C K +++SS + +H K H +P + T KL+K + +H KI + + P+ C+ CG AF +L HK + K + C C
Sbjct: 675 SKFSILTKHKVIHTGEKPYKCEECGKAFNWSSNLMEHKRIHTGEKPYKCEECGKSFSTFSVLTKHKVIHTGE-----KPYKCEECGKAYKWSSTLSYHK-KIHTVEKPYKCEECGKAFNRSAILIKHKRIHTDEKP-YKCEECGKTFSKVSTLTTHKAIH-AGEKPYKCKECGKAFSKFSILTKHKVIHTGEKPYKCEECGKAYKWPSTLSYHKKIHTGEKPYKCEECGKGFSMFSILTKHEVIHTGEKPYKCEECGKAFSWLSVFSKHKKT---HAGEKF--YKCEACGKAYKSSSTLSYH-KKIHTEEKPYKYEECGKGFSTFSILTKHKVIHTGEKPYK--CEECGKAFNWSSNLMEHKK-IH------TGETPYKCEECDKAFSWPSSLTEHKATHAGEKPYKCEECGKAFSWPSRLTEHKATHAGEEPYKCEECGKAFNWSSNL----------MEHKRIHTG-EKPYKCEECGKSFSTFSILTKHKVIHTGEKPYKCEECGKAYKWSSTLSYHKKIHTVEKPYKCEECGKGFVMFSILAKHKVIHTGEKLYKCEECGKAYKWPSTLRYHKKIHTGEKPYKCEECGKAFSTFSILTKHKVIHTGEKPYKCEECG 1259 HSP 4 Score: 99.7525 bits (247), Expect = 1.777e-20 Identity = 128/539 (23.75%), Postives = 202/539 (37.48%), Query Frame = 2
Query: 2672 NCFHASNSIQEHNAHISECGKYDGEMLCMDCNNCFSSVKKLNQHRIKVHNVRMPFRCGVCNQPFESHPAVMEHMATHDNNAPEFKCRYCTKVFHNAEALNKHFQRHKEVDVEHQCRFCGKSFKTDAFLKDH--IGTAHVIRDEIEQVPQPPRVSFRNNQASVSRSQQXXXXXXXXXXXXXXXRKYFLCRYCDLAFKNKELLSRHVKQCSKNGGSDVTTYVCDVCKEFFPTDDARKLHLKNDHRRQNGYRCPKCSKVYRTWTRLKFHTKQQHLKK--NCPDCSAVFTKEHVLRKHREDVHGKSTAEEGDRIYKCSDCNLTLYTLTDLTMHRRTVHPDRKSKTSSAAEFSSNATMLS---FIDNQSNNISSTMEEASNKSHPTPPLTVIKPKKEPPVNHALNANG----------LDKPYQCERCNSTFDSEKRLKNHLGLTHGERPFVCELCNKRFQYSSQIVWHMKNHQ-NRP-----AGSLTKTAGKLWKPKNFHGKIKSKLPFVCQFCGAAFKAEKLLKNHKGVAHKIKLFTCYICS 4219
N FH ++ H I GK + C + F + L+QH+ +++ ++C + F + + + H P ++C+ C K F L KH H + ++C CGK+F A L H I T E +VS ++ + K + C+ C AF L H K + Y C C + F H K H + Y+C +C K Y+ + L +H K +K C +C F+ +L KH E +H G++ YKC +C ++L H++ + K + S ++L+ I N EE +H KP K A N + +KPY+CE C +F + L H + GE+P+ CE C K +++SS + +H K H +P G + L K K H K P+ C+ CG F L HK + K + C C
Sbjct: 152 NVFHKCSNSNRHK--IRHTGK--KHLQCKEYVRSFCMLSHLSQHK-RIYTRENSYKCEEGGKAFNWSSTLTYYKSAHTGEKP-YRCKECGKAFSKFSILTKHKVIH-TGEKSYKCEECGKAFNQSAILTKHKIIHTGEKPNKCEECGKAFSKVSTLTTHKAIHAGE-----------------KPYKCKECGKAFSKVSTLITH-----KAIHAGEKPYKCKECGKAFSKFSILTKH-KVIHTGEKPYKCEECGKAYKWPSTLSYHKKIHTGEKPYKCEECGKGFSMFSILTKH-EVIH------TGEKPYKCEECGKAFNWSSNLMEHKKIHTGETPYKCEECGKGFSMFSILTKHKVIHNGEKPYK--CEECDKATHAGE-----KPYKCEECGKAFNWSSNLMEHKRIHTGEKPYKCEECGKSFSTFSILTKHKVIHTGEKPYKCEECGKAYKWSSTLSYHKKIHTVEKPYKCEECGKAFNQSAILIKHKRIHTGEK---PYKCEECGKTFSKVSTLTTHKAIHAGEKPYKCKECG 643 The following BLAST results are available for this feature:
BLAST of TCONS_00006054 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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