TCONS_00006038 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006038
Unique NameTCONS_00006038
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length774

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006038 ID=TCONS_00006038|Name=TCONS_00006038|organism=Clytia hemisphaerica|type=transcript|length=774bp
ATGTTTATTTGTCATATTGGTGATCTGGTTATTTCGCATTTATGGACCAG
CTGGTGTCTGGTGCTGGATTAAAAGGGATGCAACTTATTTACGATTTGGT
ACTTGGTATATCCCCATCTTTGTCACCATTTTTGCCATGTTTGTTGCCTA
CATTTACATCGTTGTGTCCGTTTTCAAACGTAAGGAACGCTGGACTGGCA
CCTTTAATCAGGAAGAGGAACATGATAAGCAGATGCTGGCTCGGGAGGTG
AAACCTCTAGCTGCATTCCCCTTGATCTACCTCCTTTCTGGTATCCCGAC
CCTGATCTACCGTATTGATGATGCAGTACATCCACATCTGCTACCCTCCT
ACCCCTTACTCATCTTCAGCGTAATCATGTCTCCACTAGTGGGAGCAATG
AATGCTATAGCATTTGCAGTTTACggtgaaattcaaaaattgttgaCCTG
GGGTCAAATTAAATCAGCATTTTTATCACGTTTTCAATCAGATTCGGCAA
GGATTATACATAATGTAGAGATCGGTGATAATTTACCGGATAATGATTAT
CTACAAGTTGAAAACGAGGCTGATGATGTTGATGATGGTATCGAGTATTA
AGGACGGATAATTTATTGTTTTCCAAGTTGGCGATATACCTAAAATGAAA
TAATAGTTATAAGGGTATAAAGAGTATATACACTAAATCAAGtgagatta
aactttgactgaaaaaaaatcattttttaatttgcttTATCAGTTTGATG
AAAGATTTAGAACAAAGATGTCCA
Run BLAST on NCBI

protein sequence of TCONS_00006038-protein

>TCONS_00006038-protein ID=TCONS_00006038-protein|Name=TCONS_00006038-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
CLFVILVIWLFRIYGPAGVWCWIKRDATYLRFGTWYIPIFVTIFAMFVAY
IYIVVSVFKRKERWTGTFNQEEEHDKQMLAREVKPLAAFPLIYLLSGIPT
LIYRIDDAVHPHLLPSYPLLIFSVIMSPLVGAMNAIAFAVYGEIQKLLTW
GQIKSAFLSRFQSDSARIIHNVEIGDNLPDNDYLQVENEADDVDDGIEY
Run BLAST on NCBI

transcript from alignment at sc0000062:41626..42687-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006038 ID=TCONS_00006038|Name=TCONS_00006038|organism=Clytia hemisphaerica|type=transcript|length=1062bp|location=Sequence derived from alignment at sc0000062:41626..42687- (Clytia hemisphaerica)
ATGTTTATTTGTCATATTGGTGATCTGGTTATTTCGCATGTATAAATATT TTGTACAAAGGCTCATTTTATTCCTTAGTGTATCTGCAGCTTTACAGTGT GTATCTTTCCTCATTGGTGATATCTACACAGATAATTTTCTTTGTGAATT CCAAGCATTTATCATGCAGTATTTTGGATGGGCTACCCTTCTCTGGGTAG TGGCAATGACTGTTAATTTAATCATGGTTCTAAAGGGAATGGAAAGTGCT CGCTACGAGAAATTATTCCATTTGGTATGTTGGGGCCTGCCTTTGTTATG GGCCTGTTTACCGTTCCTTCACAATAGTTATGGACCAGCTGGTGTCTGGT GCTGGATTAAAAGGGATGCAACTTATTTACGATTTGGTACTTGGTATATC CCCATCTTTGTCACCATTTTTGCCATGTTTGTTGCCTACATTTACATCGT TGTGTCCGTTTTCAAACGTAAGGAACGCTGGACTGGCACCTTTAATCAGG AAGAGGAACATGATAAGCAGATGCTGGCTCGGGAGGTGAAACCTCTAGCT GCATTCCCCTTGATCTACCTCCTTTCTGGTATCCCGACCCTGATCTACCG TATTGATGATGCAGTACATCCACATCTGCTACCCTCCTACCCCTTACTCA TCTTCAGCGTAATCATGTCTCCACTAGTGGGAGCAATGAATGCTATAGCA TTTGCAGTTTACGGTGAAATTCAAAAATTGTTGACCTGGGGTCAAATTAA ATCAGCATTTTTATCACGTTTTCAATCAGATTCGGCAAGGATTATACATA ATGTAGAGATCGGTGATAATTTACCGGATAATGATTATCTACAAGTTGAA AACGAGGCTGATGATGTTGATGATGGTATCGAGTATTAAGGACGGATAAT TTATTGTTTTCCAAGTTGGCGATATACCTAAAATGAAATAATAGTTATAA GGGTATAAAGAGTATATACACTAAATCAAGTGAGATTAAACTTTGACTGA AAAAAAATCATTTTTTAATTTGCTTTATCAGTTTGATGAAAGATTTAGAA CAAAGATGTCCA

Coding sequence (CDS) from alignment at sc0000062:41626..42687-

>TCONS_00006038 ID=TCONS_00006038|Name=TCONS_00006038|organism=Clytia hemisphaerica|type=CDS|length=1200bp|location=Sequence derived from alignment at sc0000062:41626..42687- (Clytia hemisphaerica)
TTATGGACCAGCTGGTGTCTGGTGCTGGATTAAAAGGGATGCAACTTATT
TACGATTTGGTACTTGGTATATCCCCATCTTTGTCACCATTTTTGCCATG
TTTGTTGCCTACATTTACATCGTTGTGTCCGTTTTCAAACGTAAGGAACG
CTGGACTGGCACCTTTAATCAGGAAGAGGAACATGATAAGCAGATGCTGG
CTCGGGAGGTGAAACCTCTAGCTGCATTCCCCTTGATCTACCTCCTTTCT
GGTATCCCGACCCTGATCTACCGTATTGATGATGCAGTACATCCACATCT
GCTACCCTCCTACCCCTTACTCATCTTCAGCGTAATCATGTCTCCACTAG
TGGGAGCAATGAATGCTATAGCATTTGCAGTTTACGGTGAAATTCAAAAA
TTGTTGACCTGGGGTCAAATTAAATCAGCATTTTTATCACGTTTTCAATC
AGATTCGGCAAGGATTATACATAATGTAGAGATCGGTGATAATTTACCGG
ATAATGATTATCTACAAGTTGAAAACGAGGCTGATGATGTTGATGATGGT
ATCGAGTATTAATGTTTATTTGTCATATTGGTGATCTGGTTATTTCGCAT
TTATGGACCAGCTGGTGTCTGGTGCTGGATTAAAAGGGATGCAACTTATT
TACGATTTGGTACTTGGTATATCCCCATCTTTGTCACCATTTTTGCCATG
TTTGTTGCCTACATTTACATCGTTGTGTCCGTTTTCAAACGTAAGGAACG
CTGGACTGGCACCTTTAATCAGGAAGAGGAACATGATAAGCAGATGCTGG
CTCGGGAGGTGAAACCTCTAGCTGCATTCCCCTTGATCTACCTCCTTTCT
GGTATCCCGACCCTGATCTACCGTATTGATGATGCAGTACATCCACATCT
GCTACCCTCCTACCCCTTACTCATCTTCAGCGTAATCATGTCTCCACTAG
TGGGAGCAATGAATGCTATAGCATTTGCAGTTTACGGTGAAATTCAAAAA
TTGTTGACCTGGGGTCAAATTAAATCAGCATTTTTATCACGTTTTCAATC
AGATTCGGCAAGGATTATACATAATGTAGAGATCGGTGATAATTTACCGG
ATAATGATTATCTACAAGTTGAAAACGAGGCTGATGATGTTGATGATGGT
ATCGAGTATTAATGTTTATTTGTCATATTGGTGATCTGGTTATTTCGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003445XLOC_003445Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006038-proteinTCONS_00006038-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006038-exon-sc0000062-1575043694:42649..42687TCONS_00006038-exon-sc0000062-1575043694:42649..42687Clytia hemisphaericaexon
TCONS_00006038-exon-sc0000062-1575043694:41626..42360TCONS_00006038-exon-sc0000062-1575043694:41626..42360Clytia hemisphaericaexon
TCONS_00006038-exon-sc0000062-1510915933:42649..42687TCONS_00006038-exon-sc0000062-1510915933:42649..42687Clytia hemisphaericaexon
TCONS_00006038-exon-sc0000062-1510915933:41626..42360TCONS_00006038-exon-sc0000062-1510915933:41626..42360Clytia hemisphaericaexon
TCONS_00006038-exon-sc0000062-1491911889:42649..42687TCONS_00006038-exon-sc0000062-1491911889:42649..42687Clytia hemisphaericaexon
TCONS_00006038-exon-sc0000062-1491911889:41626..42360TCONS_00006038-exon-sc0000062-1491911889:41626..42360Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:41626..42687 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.03057 2.49345 1.01267 1.68631 14.7433 13.0293 9.42313 14.0345 8.14021 6.90563 11.9093 4.44837 4.8164 2.30931 2.79528 3.14425 4.71138 4.97976 2.9017 4.94773 6.85941 5.88096 5.69126 7.44132 8.91751 7.66408 2.32641 1.91685 4.72636 4.21345
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006038 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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