TCONS_00006031 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006031
Unique NameTCONS_00006031
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length268

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006031 ID=TCONS_00006031|Name=TCONS_00006031|organism=Clytia hemisphaerica|type=transcript|length=268bp
TTTAAATGGAGTCTAAACTGAAACCGGACTGgttACCTTACCCCGAACTT
TCCAGGTCTTGGTACGCCCGGAATAACAATCCATCGCCTTATCCACTGCT
CTCGAAATCGTGGTACCGAAATAATGGTTTGCGCGAAAATTCTCTACTTA
AAAATGCATCTCCTCTTTTGTCAAGAGATTGGTATAAGCGTCGTGGTGAG
TTGATCGCAAAAAACATCAGTAGAAATAACCCATCAACTCACTCCGAAAT
TACCGACATCAACACAAT
Run BLAST on NCBI

transcript from alignment at sc0000062:709299..709841+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006031 ID=TCONS_00006031|Name=TCONS_00006031|organism=Clytia hemisphaerica|type=transcript|length=543bp|location=Sequence derived from alignment at sc0000062:709299..709841+ (Clytia hemisphaerica)
TTTAAATGGAGTCTAAACTGAAACCGGACTGGTAAGTTTATCTGCGGGTA
TGTCTCCTTCCTCGCCTTGGATCTTTGGGCCAATAGAGTGTGGTAAAATT
ATAGCACTGCGGTATCAGCCACTGCATGTTTTAGTTATCTTTATTATTAT
AGGGTAATTTGTCTGAGGCTGGGTGTAAGCTTAAATTCTTATTATTGTTT
AAGTTTTTTCCCTTTCGATTAAAAAACCCCTTCTTATGCTGATTACACAT
GGAAAAAAGtgtgaattttttatttgtatATAATTAGctcttgttatttt
tttcaggttACCTTACCCCGAACTTTCCAGGTCTTGGTACGCCCGGAATA
ACAATCCATCGCCTTATCCACTGCTCTCGAAATCGTGGTACCGAAATAAT
GGTTTGCGCGAAAATTCTCTACTTAAAAATGCATCTCCTCTTTTGTCAAG
AGATTGGTATAAGCGTCGTGGTGAGTTGATCGCAAAAAACATCAGTAGAA
ATAACCCATCAACTCACTCCGAAATTACCGACATCAACACAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003441XLOC_003441Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006031-exon-sc0000062-1491911889:709299..709329TCONS_00006031-exon-sc0000062-1491911889:709299..709329Clytia hemisphaericaexon
TCONS_00006031-exon-sc0000062-1510915933:709299..709329TCONS_00006031-exon-sc0000062-1510915933:709299..709329Clytia hemisphaericaexon
TCONS_00006031-exon-sc0000062-1575043694:709299..709329TCONS_00006031-exon-sc0000062-1575043694:709299..709329Clytia hemisphaericaexon
TCONS_00006031-exon-sc0000062-1491911889:709605..709841TCONS_00006031-exon-sc0000062-1491911889:709605..709841Clytia hemisphaericaexon
TCONS_00006031-exon-sc0000062-1510915933:709605..709841TCONS_00006031-exon-sc0000062-1510915933:709605..709841Clytia hemisphaericaexon
TCONS_00006031-exon-sc0000062-1575043694:709605..709841TCONS_00006031-exon-sc0000062-1575043694:709605..709841Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:709299..709841 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.49955	2.80772	0.491438	1.21745	3.54506	0.388397	1.55143	0	0	0.355376	8.75588	8.07705	1.23988	1.29744	0.563856	0	0	1.21583	0	1.11763	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006031 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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