TCONS_00006029 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006029
Unique NameTCONS_00006029
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2075

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006029 ID=TCONS_00006029|Name=TCONS_00006029|organism=Clytia hemisphaerica|type=transcript|length=2075bp
AAGAGATCAATGAAATTATAAAGAGAAAGCATTTGGCGTGTATCGATATA
AACCTTTAAACAGGAAACACGGTAGGCGGTTATAATGTTATAGAAGAGTA
AGGATTCGAGGTGCCGCCGATAATTGAAGACGTCATCAAAAACAACAGCC
ACCAAGGTGGCGGCGGAGATTCATCAACCGGAGAAAATTCATCACCGGAA
ACACCCACCGAACCAGAACATTACAAAAACGAAAcacaaaaggaaaagaa
aaagaaaaaacggAAAAAGGATCGACAACCAACGGTAACAATGTCACCCC
CGGCTGACGCACAAGTTCCAGTGTTCTTTGCAGACGATATACGGCATCGA
GACGggggtcaaaataagaaaaaccatGACAAAATTTCGTCAAAGAATTC
CGGATTGTCTACACCGAAGATAGAGAAATCATCAAGTTTTAAACGAAAAA
CGAAGCCACCATACTTGGAGTCAATGATGGCAAGAGAGTATAACTCTGAT
CAAAATAGTAAAAGTCCGAGCAGACCTGACTCCcgtaacaacaacaacaa
cacaaagAATGATACAGAATACAACATTGTACTGTTAGGAGATTTTGGAG
TCGGAAAAACtgctCTTGCAGTTCGTTTTGTCACGAGGCGTTACCTACAT
GAATATGACCCAACATTAGAACGCACGTACGAGAAGCAAATACAATGTTC
AAATGGATCAGCCAAAGTCAAATTATGGGACACTGTGAACAAGTCTTTCG
ATGCGTATACCGAATACGCTGATGGATTCATCGTGATGTATTCTACAACC
TCGTCGCAAACCTCTCAAAATGCACAAAACACTATAAAGACAATACGAGC
TTCAAAATACGCTGCCGTTCGAAGCGTCCCAATCTTGTTGCTAGGCACTA
AATGTGAATTAGAGCATGCGCGGAAAGTACATGCTAAAGAACAAGAAGCC
TTCGCAAAGGCTCATGGGTGTTTATGGCGGGAAATTTCTGTAGCGTGTAC
GATAAATATTGATGGGACCATTAAAGGTTTGATCGAGGAAATAATAATAA
CGGACAACGGCCGAATTGATTCAAATGGACATAGTAAATTAACAGCTACT
ACGAGTTTGTCGCGGAAACCGAGTGCTGCTAAAAAGCATTTGATGAAAAG
TTTACTATCGTCCAAAAAGAAGGAGAAATCTTGATATTGATAAATGCATC
TGATTGTTGGGAAGATGTTGAAAGTATGAAGGTttataatgagaaagaaa
aacgaTTTCGATCATTTATGGTACCATATAGAGCGGTAGTAGAGCTTTCA
ATTCCAAAGNACGATTTCGATCATTTATGGTACCATATAGAGCGGTAGTA
GAGCCTTCAATTCCAAAGTTGTCAAGCTCGATGTCTTTTAATAAGATGCA
ATAAATTTCGAAGCTTGACCGTACCATGTATGATCGCGTAAAACGATTAT
GAAATAACGTTGAataaatagaccttatcggagtttttttttctaaaaaa
gcgatgcattgtgggattgttttaagtgtattacaatataaatctctagg
aattcctcgagggaattctaatGTAATACActtgaaacaatcccacaatg
catcgcttttttagaaaaatcaaaaactctgataaggtctATTAAGTAAA
ACTAACAGAGAAAATTAAACTCGAAGAGCTTCGGTTCAAGAAAATTGTCG
AGACATATACAGAATTCGAAAACGGCATCAACATTTGGAATAAAATTTCA
tatgatattttggtttaataaattgtataaattGGAAATAGGTATTTTTG
TAATTATAATTTGATGAAAGAAACATTATAAATTTCTAGAAAACTTTTTT
GTACCACTCAGATATACCATTCCAACGAGATGTCTAATGTCGTAAggtat
tgttggaaagataataaTATATGTCCCGCATAAATATATAAAACAAACCT
TAAGTGGGTTAATTTTGGCGGGATTAAAATTGGCGAATTtagtgattttc
agaaaaattcgCAAATATAAGTTCATTGGACCATTCGAGTTCTGAGgact
gtattcatgatatgcaccactggaa
Run BLAST on NCBI

transcript from alignment at sc0000062:627336..635928+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006029 ID=TCONS_00006029|Name=TCONS_00006029|organism=Clytia hemisphaerica|type=transcript|length=8593bp|location=Sequence derived from alignment at sc0000062:627336..635928+ (Clytia hemisphaerica)
AAGAGATCAATGAAATTATAAAGAGAAAGCATTTGGCGTGTATCGATATA
AACCTTTAAACAGGAAACACGGTAGGCGGTTATAATGTTATAGAAGAGTA
AGGATTCGAGGTATGAAATGCTTGATGAACATTTTATGTTCCGCTAAAAG
TCTGcataaaatgtcaaattttaaaCACAGGAACATATTGGAGTAGTATA
GAATCTGTGCAATACAATTGTTATGGGATAACATCAACTTGAACAACTAC
AGTTTATCCATCCCAAACAAAATAGtagttttcagaatttttagaattca
aatttttgaaggcataaataaatgtatttttaatgggTTATCGTCAAATA
ATCAAACACATACGgaagaaattgtaaaaatgtttgatttaaATTACGTT
TCTTTATGTGGGACTTAGCGAGTTTTTGGATTTCAAGGAGATATGGTTAG
GTTGGACCAATTCCTTTCTGATGGGACTATCGTGGTTTTGAAGTAAAGAT
TCAAATCGTTATCAATTCCAGAACAAAGGAATTTATCAACCGTTATTGAt
caaatgaaacttttttccaCAGGTGCCGCCGATAATTGAAGACGTCATCA
AAAACAACAGCCACCAAGGTGGCGGCGGAGATTCATCAACCGGAGAAAAT
TCATCACCGGAAACACCCACCGAACCAGAACATTACAAAAACGAAAcaca
aaaggaaaagaaaaagaaaaaacggAAAAAGGATCGACAACCAACGGTAA
CAATGTCACCCCCGGCTGACGCACAAGTTCCAGTGTTCTTTGCAGACGAT
ATACGGCATCGAGACGggggtcaaaataagaaaaaccatGACAAAATTTC
GTCAAAGAATTCCGGATTGTCTACACCGAAGATAGAGAAATCATCAAGTT
TTAAACGAAAAACGAAGCCACCATACTTGGAGTCAATGATGGCAAGAGAG
TATAACTCTGATCAAAATAGTAAAAGTCCGAGCAGACCTGACTCCcgtaa
caacaacaacaacacaaagAATGATACAGAATACAACATTGTACTGTTAG
GAGATTTTGGAGTCGGAAAAACtggtaagaaacattttatgTGTTCGGTC
AAAAAATGGAAGAATAGACCTTAtgggattttttcatttttctaaaaaag
cgatgcattgtggcattgtttcgggagtattacaatagaattccctcgag
gaattcctaagacatttctattgtaataccgccgaaacaatcttacaatg
cATCgctattttagaaaatttaaaaactccTATAAGATCTATACTTTATC
TACACGATTCTGTATTTAAAGTCATTTTTGTGATAGACAAATCAGGTGCC
TTTCTTATGCTGATTTTTAATCACTCTGCATTTACGGTGCCGAGGGAAAG
GGTGTGGTCGTCTGGTCGTCCGCTACAGGCAATGCGGGAGGgagaaaaag
ttgttttttattttgttcatgATAATTGTAGGCAAATGGTCAAAGCTACG
TTTTTAAATTATATCTGTATATGATCTAaactttctaaaattaaattctg
TTTCAAAGGTATGTGGACACTTtagttttttttgcattttcccaGCACCA
GACTTTAGGTAGTAAAATTCGACAATTAAAAAACTTCTCCACAAGAGAGG
CAATTACGGTGCACACACATATagtggactctctctaattcgaacttcaa
ttattcgtttttttctataattcgaactaattctcggATTGAAAATGTAA
ACTATGAAACAGATGATGTCATAATTTCCATAAAATATCGTGTGATATTA
AATAACAATTTCTATAAAAGATGAGAGAGAGAATGTGACATGTTTTTATA
AGGTGTGTCAACTTGATAACAGATCAACTTGTCAAAACTTCTTACAAAAT
AATTTCTTGTTGTAGTCAATACAAGAAGCCCACGCAATATTTCAAATCTT
TTGCGTCTTTCAGGTTTAACTTCaacttgtttttaaattttcaccaTACT
TGAAACACTTTTGAAAGGCGCTTGTATATAAATATTCCAATTGAAAATCA
ACCAAGGGGGCTCTAGCCAACTATCTTTACTATGTACAAGAGTAGAGCCT
CCACAACTTGAACGCCCGGGTGCAAGGGACAATTGTACCGAGTTTATAAA
GAGGTAAAATAGCCTGCTTTTTTTTCAAGGGACCACTATAATTAGGGAGA
CTCTACTGTCTTTAAGGTCTAATATGTCATGCAACGACGCCAGAGTAATT
GTCAAAGAAAAGTATTATCACGTAATAAAGGTCAAAACCGTATCTAACTT
GAATAGAATTAATTAGTTTGATAATTACTACCTAAAAAGAAGGACTTAAT
CCGAAAACAAGGATATAAAATTTAATTACACTCATCTATGTTTAGCTCAT
CACAATCCGAATTAAGGATTCTACAAACTCTTTTATATCCGCACACTAAG
GTCAAAGACAGCATGGTTTCAGCCCCCTAGATTTCTAAAGGGGACCTAGG
CCCAGCTGTGAGAGGGGAGCTGAAATTTACCTGCTGATCTGATAGACTCT
GGAGGATGTTTCAAATTGAATACTGCACACAATTCTTAATTTCAATTCTC
CATTTTCAAGTTTATTATGATTCGTGTCTGCCGTTTTTTTGGCAACAATC
GTTAagattttaggaatgacaagaaaacaaaagtgtcatttaaaaaagat
tctcGGTTAGTCAGGGCTCCTACCAACCTAAAAcaggttaaaaaaaaaca
agttaatCAATGGGGGTACCTATAAACCCGAAGCAAATTTTTAAGGAGAC
CTTAATCATTGGATGTGCCATGTTTTCTTCGGGTgactgaaaagtgggct
gaaatcACGTGACACGCTGATTCTCTAGGGTTATTTCAATATTTGTTGgc
tgaagattttcttttttgtctctCCTATCCCCCTCTTTCTAATATTTTCA
TTCATCTATCATCTACATTTCAAATCAAGTAATGACAAATCTgaattatc
tttcttttttcagctCTTGCAGTTCGTTTTGTCACGAGGCGTTACCTACA
TGAATATGACCCAACATTAGGtaagcattttcttatttgactTGAAATTC
TGATGTACCCCCGTCTCTTTAGAACTGTCTGCAAGATGGAGTGCTGAGTC
CTAAAAGTGACAGATATTTCACATTCAGCTAGTAGCAATTGAAAATTACA
GATTTACAATTTTGGATATTGAGAATTTAAGAACTAAATGATGTGGCATT
GCATAtagattttgaaattaaatcacCCCCTTCCATTTCGATGTCGAAAT
CTCTCAAAATCAATCTATTTGGTTTTGAACTAGATTTCTTTAAACGGAAA
AATTAAAGACTTGAAATATAAGAAGTTTTTCATTATTTgctatttcccat
ccaaaagttttatttctacCCTCTTTGggactttaaactcaatggcgAAG
GAAATATCtgaaatgggctattccagaaagaATTTGTATCCCCTGTGTTG
AGAAGgtcttttttgtgaaaagtgaCCCCCACCcatggatttttttcaat
ttttcaggaccccttTGGATTTTCCACATCATTTTGCTGACCACCCTGTA
TTTTTACATTGAAAAACCAGACCCCCTTGGATCTTTTATTTTCCTAAACC
Accccaccctggacgtcacacctcctcgacgttacagactatttctgggc
CAACTATAGCCCAACAATGATCTTATAACCATAATTTTAGAACGCACGTA
CGAGAAGCAAATACAATGTTCAAATGGATCAGCCAAAGTCAAATTATGGG
ACACTGTGAACAAGGTGAGCTAGAATAACTATATCCATATGTGTGACTAA
AAGAACGGCATAAAAAGGCATTAGTacacgattttttataagaacaggct
atataagaacataaggcttcgatggttagccatttttaagaataatttaA
GGCTTTGTGAACTCTCAAACATCCAATTTATTtatcttaggaaaatgggc
aaaattactcacaaaatggtgtaaaaacacgttaagaacattttttaNTG
Ggcaaaattactcacaaaatggtgtaaaaaacacgttaagaacatttttt
tggctttttaggCATCTCTACCTTGAATAAAAAGTGAAGTAGGAGCAAAA
TATAATGTTTATCGCTGCGAGCAGGGTTCGAACCTGCGCGGGTAGaaccc
attagatttcaagtctaacgcctttaaccactcggccatcacAGCTTACT
ATCATCAGATGAAAACAATTGCCTTATAACAAATTCTTCTTTACAGCGTT
GTCATAGAAAGAAATATTATCATTACTATGTACGAACTATTTCCTCTAAT
TTCACACATATACGATTGCTACTTTTATTATGATCGTacgtacatgtttt
ttataagagcatccaaaaagttttcaaacCATCAGATGTTCTTAAACGTA
TTTGTTTTGAgccttgttcttattttcaccattttgcgagtattttgtgt
atttttcatagaaattgggtgttttagtcCACAAAGCTTTGAACTGTTCT
TTACagtattcttaatattttgtcaATTGAACCCTTAATAGTCATTTCTT
AAAAAACGTTTATTGCTTCATAATGATTATTTCCAAGCAAGATCAGGTCA
GTCGAAAAACAATTGAATGAAAgctaataaaccagctgcgctggaaggtc
agcccaataagcttaaaacCTTAACGATTAGAAGAaagtacaatcaagaa
acctaattcgatgttaaagccaaagaggttgaaaagctcattttggttga
acttcagacaaaaaaaagtttaaaacaaaGTTGAATTTGTCCAAAGCAGA
CAGAGATGTGATAGATTATTTCATTCTTGGAATTTCACACAAATCATTTC
GTTAGAATGTCTTAAACGATTAAACCTGTTCTTTATTCTCTGAGAAAGTA
TCCGAGGCGGCCGCTTTATAATATGTTCACTGCAGCTTCGTcacttttgt
tcatttttatgtagatttatttattttttctccagTCAAGGCCGCTCCTC
GTTGAGTGTGCACGGTTCCGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNaaaacatcattagacaagaaattcagacaaaatgcttataatgac
acaaaattttcaattggaaatatctttccaagactgtccccagaacagct
gaaattaacatacgtaagacttgagtgtcttggttccactgtggtatgaa
aatcctttggaggcacgtggtggcaaggtgtttttttgaggttaaagctt
gaaaatttccggtgtcaacattcaatttcttatacacaacacgtcttttg
catctttctcgcagcctgaaacgtcataacgacttatgattagcaattaa
gtggaagaatctgaatctcacaggaaagttttaagtctcttttgggaatt
ggatgagtgatttttgataagaaatgcaataaaaatgcttcgaaaaatca
tttaatgagggaaggagagtgNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNa
aggagagtgaacaataatatcattactgcggacatagctagtacacgaga
aatcggcaaaaatctgttacttgtatatccagtgtataatataTCCTTGC
TTTGACGTTCCTTTGTTACACACAAAACTCTCCAGACAAGAAACAGAAGA
AATTCTCAAAACCAATcatgaaaaactttcttttacactctctatttatt
tacaatgcaatagcttctttcgatttattgaataaacaaaaaaaattttt
aattatagTGTTCTTTTATTATCATGCGCAAATCTTTTAATGAAGTTATC
Gatgtgtttcttttctctttcaagaaaaaatatttttcgcgccaaagttt
tcccgataacttgttttccgaaaataatccgaataTCGGAATTAATTGGG
TGCGATCAGAAAATCGGGCGatcggaaaaatcaaaataaatcttaTGGCA
ATGGCGACGATAGCGAATGGGGCTGACCAAttatagtccgtataaaaaac
cccggtgtGGAACTGGaagtcttttgtttctttccattgtttctgacttg
aacttgcgttgagaaattagtttgttttacTAACTTTTtaatcatgtgat
taaatcttaaacgaATCCCAAGAGgcgtacttggtaacgtgatcaaaaac
ttcgcaaatcgatttttatcttttgttattagtgaggttaagtaaatcag
taaaatcacgacgacgaacgaaaattcaACAgactagtgagtttcaacca
atcaaatttcgtattttcactagcctattacatttttcgtccgtcgtcgt
caTTATCcttgtatgcttaacctcactattaaaaagctaacaaaaagtta
aaatcaatacaccttttcgaccgtagtcgcgcgggcattttttttatctc
actaaaaccgtcccaatccttttttgacgcatttttctattgtctattgg
tgcgaaaaaaggactgagaaggttttagtgggataaagcggacaaaaaaa
tgcccgcgcggcaattggtggctacggtcgaaaaggtgtataagcttcca
gaccaaggttttttatacggactatgtaATTTCTAATTAAATCCTTTTAT
TTCTTTCCCAGTCTTTCGATGCGTATACCGAATACGCTGATGGATTCATC
GTGATGTATTCTACAACCTCGTCGCAAACCTCTCAAAATGCACAAAACAC
TATAAAGACAATACGAGCTTCAAAATACGCTGCCGTTCGAAGCGTCCCAA
TCTTGTTGCTAGGCACTAAATGTGAATTAGAGCATGCGCGGAAAGTACAT
GCTAAAGAACAAGAAGCCTTCGCAAAGGCTCATGGGTGTTTATGGCGGGA
AATTTCTGTAGCGTGTACGATAAATATTGATGGGACCATTAAAGGTTTGA
TCGAGGAAATAATAATAACGGACAACGGCCGAATTGATTCAAATGGACAT
AGTAAATTAACAGCTACTACGAGTTTGTCGCGGAAACCGAGTGCTGCTAA
AAAGCATTTGATGAAAAGTTTACTATCGTCCAAAAAGAAGGAGAAATCTT
GATATTGATAAATGCATCTGATTGTTGGGAAGATGTTGAAAGTATGAAGG
TttataatgagaaagaaaaacgaTTTCGATCATTTATGGTACCATATAGA
GCGGTAGTAGAGCTTTCAATTCCAAAGNACGATTTCGATCATTTATGGTA
CCATATAGAGCGGTAGTAGAGCCTTCAATTCCAAAGTTGTCAAGCTCGAT
GTCTTTTAATAAGATGCAATAAATTTCGAAGCTTGACCGTACCATGTATG
ATCGCGTAAAACGATTATGAAATAACGTTGAataaatagaccttatcgga
gtttttttttctaaaaaagcgatgcattgtgggattgttttaagtgtatt
acaatataaatctctaggaattcctcgagggaattctaatGTAATACAct
tgaaacaatcccacaatgcatcgcttttttagaaaaatcaaaaactctga
taaggtctATTAAGTAAAACTAACAGAGAAAATTAAACTCGAAGAGCTTC
GGTTCAAGAAAATTGTCGAGACATATACAGAATTCGAAAACGGCATCAAC
ATTTGGAATAAAATTTCAtatgatattttggtttaataaattgtataaat
tGGAAATAGGTATTTTTGTAATTATAATTTGATGAAAGAAACATTATAAA
TTTCTAGAAAACTTTTTTGTACCACTCAGATATACCATTCCAACGAGATG
TCTAATGTCGTAAggtattgttggaaagataataaTATATGTCCCGCATA
AATATATAAAACAAACCTTAAGTGGGTTAATTTTGGCGGGATTAAAATTG
GCGAATTtagtgattttcagaaaaattcgCAAATATAAGTTCATTGGACC
ATTCGAGTTCTGAGgactgtattcatgatatgcaccactggaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003439XLOC_003439Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006029-exon-sc0000062-1491911889:627336..627445TCONS_00006029-exon-sc0000062-1491911889:627336..627445Clytia hemisphaericaexon
TCONS_00006029-exon-sc0000062-1510915933:627336..627445TCONS_00006029-exon-sc0000062-1510915933:627336..627445Clytia hemisphaericaexon
TCONS_00006029-exon-sc0000062-1575043694:627336..627445TCONS_00006029-exon-sc0000062-1575043694:627336..627445Clytia hemisphaericaexon
TCONS_00006029-exon-sc0000062-1491911889:627908..628409TCONS_00006029-exon-sc0000062-1491911889:627908..628409Clytia hemisphaericaexon
TCONS_00006029-exon-sc0000062-1510915933:627908..628409TCONS_00006029-exon-sc0000062-1510915933:627908..628409Clytia hemisphaericaexon
TCONS_00006029-exon-sc0000062-1575043694:627908..628409TCONS_00006029-exon-sc0000062-1575043694:627908..628409Clytia hemisphaericaexon
TCONS_00006029-exon-sc0000062-1491911889:630349..630405TCONS_00006029-exon-sc0000062-1491911889:630349..630405Clytia hemisphaericaexon
TCONS_00006029-exon-sc0000062-1510915933:630349..630405TCONS_00006029-exon-sc0000062-1510915933:630349..630405Clytia hemisphaericaexon
TCONS_00006029-exon-sc0000062-1575043694:630349..630405TCONS_00006029-exon-sc0000062-1575043694:630349..630405Clytia hemisphaericaexon
TCONS_00006029-exon-sc0000062-1491911889:631076..631149TCONS_00006029-exon-sc0000062-1491911889:631076..631149Clytia hemisphaericaexon
TCONS_00006029-exon-sc0000062-1510915933:631076..631149TCONS_00006029-exon-sc0000062-1510915933:631076..631149Clytia hemisphaericaexon
TCONS_00006029-exon-sc0000062-1575043694:631076..631149TCONS_00006029-exon-sc0000062-1575043694:631076..631149Clytia hemisphaericaexon
TCONS_00006029-exon-sc0000062-1491911889:634597..635928TCONS_00006029-exon-sc0000062-1491911889:634597..635928Clytia hemisphaericaexon
TCONS_00006029-exon-sc0000062-1510915933:634597..635928TCONS_00006029-exon-sc0000062-1510915933:634597..635928Clytia hemisphaericaexon
TCONS_00006029-exon-sc0000062-1575043694:634597..635928TCONS_00006029-exon-sc0000062-1575043694:634597..635928Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:627336..635928 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.495016	0.0863598	0.507199	0.137513	0	0.21392	0.308954	0.827716	0	0	0	4.78725	7.19919	1.26938	2.52923	14.3408	10.1464	8.54165	8.26181	0.0956674	2.87093	4.92199	3.60653	3.53951e-07	1.48386
Blast
[Close]
BLAST of TCONS_00006029 vs. Swiss-Prot (Human)
Match: RIT2 (GTP-binding protein Rit2 OS=Homo sapiens GN=RIT2 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.295e-18
Identity = 54/164 (32.93%), Postives = 91/164 (55.49%), Query Frame = 3 
Query:  567 EYNIVLLGDFGVGKTALAVRFVTRRYLHEYDPTLERTYEKQIQCSNGSAKVKLWDTVNKS-FDA----YTEYADGFIVMYXXXXXXXXXXXXXXIKTIRASKYAAVRSVPILLLGTKCELEHARKVHAKEQEAFAKAHGCLWREISVACTINIDGTIKGLIEEI 1043
            EY +V+LG  GVGK+A+ ++F++ ++   +DPT+E  Y+ Q++  N  A + + DT  ++ F A    Y    +GFI+ YS T  Q+ Q A    + I   ++     +P++L+G K +LE  R+V  +E  + A+ + C + E S A    ID    GL+ EI
Sbjct:   20 EYKVVMLGAGGVGKSAMTMQFISHQFPDYHDPTIEDAYKTQVRIDNEPAYLDILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKFKELIFQVRH--TYEIPLVLVGNKIDLEQFRQVSTEEGLSLAQEYNCGFFETSAALRFCIDDAFHGLVREI 181
The following BLAST results are available for this feature:
BLAST of TCONS_00006029 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RIT21.295e-1832.93GTP-binding protein Rit2 OS=Homo sapiens GN=RIT2 P... [more]
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