TCONS_00006016 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00006016
Unique Name	TCONS_00006016
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1965

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000062:505264..510829+

transcript sequence

>TCONS_00006016 ID=TCONS_00006016|Name=TCONS_00006016|organism=Clytia hemisphaerica|type=transcript|length=1965bp
tcagaattaaaaaaaaatgatcatgaaattatttttcatctttctaattt
caattcaattatcGAATGGATTAGATAAAAATGGTTATGTTGTATATTGC
CCCTGTATGGGACGATTTGGCAACCAGGCTGATCAATTGTTAGGTTCAAT
GGCATTTACAAAGGCACTGAATAGAACTTTGATTTTACCACACTGGGTCA
CATATCCTTCATCCATGCCTATGTCTTCTAAACAAATACCATTTGACAGG
TGGTTTCAAATTGAACCAATCAGAGAATATCAGAAAGTCATCACAATGAA
GAAGTTTATGAAAGACTTGGCTCCCAAAGTGTGGCCTGCTGCTGAACGAA
AAGGTTTTTGTTATCGGCCTCGTTCTGAATCAGAAGAAACATGTGGAATG
AAAGAGGGGAACCCGTTTGGACCTTTTTGGGACCATTTTGGTATCTCTTT
TAAAGATAGTGTGTTTCACGAAGAGTTACTTTGGTCCACCCATAAATATA
ACGTTGAGGAATGGCACAGAAAATTTCCAGCAGGACAATATCCAGTGTAC
GCATTTCCAGGTGCACCTGGTAATTTCCCTTCTTTACCAGAACATCATTC
TATCCAGAAGTATCTCCATTTCTCAAAGTTGATCAATCGAATATCTGATG
AATACATTGAAAATGAGTTGGAAGGAAAACCGTTCTTGGCAATCCATCTG
AGAAATGGGTTGGATATGACAAGAGTTTGTGATGAAATTGACAACGATAA
ATATCACAGCCTATTCTCTTCTGCTCAATGCACCCAACTAGAAGGCAATC
CAAAACTGACATCAGCGATGTGTAACCCACCTAAGGAGGACATCATCCAA
AAAGTAGTTCACCATATCAAAAAGATGAAATTGAAAGCCCTGTTCATCGC
CACCGATAATGATCCAATgataaaagatttcaagaaGGCCTTCAAAGCGA
TCAAATTTCCAGTCAGTATTCATCGGCGTGTACACAAAGATGTCGAAACT
GAATGTGATGGACCGCTAATCGATATTGCTCTCATGAGTAAAGCTGACAT
GTTTATTGGCAATTGTGTTTCGTCTTTCACGGCGTTCGTGAGACGCCAAC
GTTTCAGTCGTGGAAAACAAATGGATTTCTTTAACTTGAAATCCAATAAA
CCTCTTCATACAGAACTTTAGAATTTGACTAcctaaattttttattacat
aGTGCTTGGACACTAAGACCTAAGGATACTGGGtgaatttttcccatttt
caccctgaaatgtgaccaaaatgactaaaactagacgaaaaattgaaaaa
ctttttttaatctcaccctgaaaattgtcaaaaggtcgaccctgtcagat
acatcttgaaaattagtaaatttgggaccctggcCAGCGATGGAGTTCAT
AAGTGCGCAAGTCAGTGCAATAGCTTCAGTCATTTGAAGTCATTCTATCC
AATTCTCTCCCACTTGTTTATTAAGCACAATGATTGATAGATGCTTTGAT
tggtattttatttttctcataataatttttgaattCATGAAATTCATTAC
GCAATGTATTCTACGGATACCCAGTAAATTTCCCGGTAAATTTAAGCTag
agaaaaatagtttcaaatTAGCCAATAAATAAATTGTTTTAATTTGACAC
TGCTGGCGAAAGCTGGAGTGTTTCCATACGAGAAAACATTACGTACTAGT
ATGCAACGAATATCATCAGGAACCTTACTTGTTTGTTTTGGTGGTTGTGG
ATATGTACCTCGGGTGTTATTGGTTTGATTTGATTGCACCCAATGGTGAT
TTCTAagttcaaattgattttaaagaaCTTGCCTTTTACTAATGTTTGTA
AAACATTTGAATtgctaattttttatcaatatttataTGCATAcaattag
aattttttaataattgcattttttatttacattttgaagaaaaaagaaat
ttcatacaAAAACAT

Run BLAST on NCBI

transcript from alignment at sc0000062:505264..510829+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00006016 ID=TCONS_00006016|Name=TCONS_00006016|organism=Clytia hemisphaerica|type=transcript|length=5566bp|location=Sequence derived from alignment at sc0000062:505264..510829+ (Clytia hemisphaerica)
tcagaattaaaaaaaaatgatcatgaaattatttttcatctttctaattt
caattcaattatcGAATGGATTAGATAAAAATGGTTATGTTGTATATTGC
CCCTGTATGGGTAAGTCACAGTGCTTGACAAATAATTTTAAGCTGTTTTG
TCTCTTAAGTGCTGCTTCATTGAAATATTAAAGAAATCATAGTAATAAAC
CCTtacatgcccccccccccaatattttgcaaagtaatttttttttactt
caaaaaatcttatatataccgtttagaggggtgagATAGGGGTGAAAAGC
CGAAAATTTTCTGTGTCGCCCAACCATGGCGGGCGACAtattttttggcc
ccctcaattcgattcgcacgccgggggccatggCTTATTTATCCCTCCAA
ACAGAAATTCTAATGCTAATTTTTTCTCGGTAGATTTATAAAACCACAAA
TAATATAGACATACCTCAATACCTCAATAGCATTTCCACTTATTTCTTTA
CCTAAGCAACATTCAATCTAGTCAATGGCTACAGACTATGTATGTAAGAC
AAGATATCGTTTAAACATAAACGCATTATTATGAAAAGCTattaaacata
aacaaagatgtcaaagttcaaaaagaaaagattttcaaagctCAGCTTGA
AGCCACCAAATTTGAAAGAAACGATACTAGAATTTCTTTGAAtagctttt
aaaatttttaaaagaggTTTTCAAATGAAATACGAATGAAGGGTATGGAA
ATCTAAGTGATTGTTATTTAATTGtattgatgactttttttataataact
tGTTTCAACAACAATTGATTTTGATACTCACCTACCTGCAGGTTGTTTAT
TATTTTATCATCTTTCTTTTGTCTGGATAGGACGATTTGGCAACCAGGCT
GATCAATTATTAGGTTCAATGGCATTTACAAAGNTTCTTTTGTCTGGATA
GGACGATTTGGCAACCAGGCTGATCAATTGTTAGGTTCAATGGCATTTAC
AAAGGCACTGAATAGAACTTTGATTTTACCACACTGGGTCACATATCCTT
CATCCATGCCTATGTCTTCTGTAAGTACTGAATCTTAAAAGGTATGGTTT
TTCTGGGTCACATATCCTTCATCCATGCCTATGTCTTCTGTAAGTACTGA
ATCTTAAGAGGTATGGTTTTTCTTACCACTAATTAATAAGCGATATATTT
CAGAGGTCATAAATTCACTCTTTAAGTTGAGGGTGTAAAATCTGAGAGTC
TGTCACATTGCATAATCTTTGATCATAAGAATTAATGGGAAACTTAGACC
ATCTTTCTCACTGTTATGCTCCAAAGTGATGACTAATAGTTTAAAGAGtg
aagggaactttcaaaagtATAGAATCTAGAATTAGAAAAATCATGTTCAT
CTATTATTTCCATTTCAGAAACAAATACCATTTGACAGGTGGTTTCAAAT
TGAACCAATCAGAGAATATCAGAAAGTCATCACAATGAAGAAGTTTATGA
AAGACTTGGCTCCCAAAGTGTGGCCTGCTGCTGAACGAAAAGGTATTGCA
AATTATTTGTCACCATTCATGCCTTCGTAAACTTTCCGAACTTCATTTga
atgaattgtttttttttaatcttttcaaCGATATTAGTAGTTTATTAAAT
TTGAAGcctttttggttgaaaaatggctaacaaaaaaattacttttattg
CCGACTATATTGGACAACATTACTTGATCAAAGGAGGTCTTTGGGTATAT
TCACACTGTTGCTTGAAAGTTGCTTTGAAATATTGGAACAAAGAATTCCA
CGttcttctcctttgtctcttattatctaagtTTGCTCGATCGCGTAATC
GTATTTCATGCAAACTTCAAGCAAAAACCATGTTTGATTTTGTGTTGATG
GCAAAACAATACTTTTGTCAGTGAGAAGGCAATCCTTTGTGGTGTGTATA
TCAACGTGAGTTCgttgtatttcaaaatttcaagctgCTTCGAATCTACG
CCACAGAAACAAAGGCAACTATAACTTTCGCTTTCACGTACATCAGCAAA
AAGTAgttaaaaattcttttcttttctagacttTCATCTTTCtatcaaca
aaatatttttatgatttagACACGTTAAAGGCCATTAGCTTTCAGTGTGA
ATACATCCTTTGTCCGAATTTTCTCATCTGTGTCAATGTTCGCTGGGTCA
AAAGACAAAGACTATGCTTAAAATCTAATTTCTAAAACAATGATAGTTCT
GAAAGATGNTGTCCGCTGGGTCAAAAGACAAAGACTATGCTTAAAATCTA
ATTTCTAAAACAATTATAGTTCTGAAAGATAATTTTCTGTTTAGGTTTTT
GTTATCGGCCTCGTTCTGAATCAGAAGAAACATGTGGAATGAAAGAGGGG
AACCCGTTTGGACCTTTTTGGGACCATTTTGGTATCTCTTTTAAAGATAG
TGTGTTTCACGAAGAGTTACTTTGGTCCACCCATAAATATAACGTTGAGG
AATGGCACAGAAAGTAAGAGTGAACAAGAATCATAAATACAATATTTAAC
TTCTTTATCTAttataaaagtgattttttataTCCAGTAGTCCCGATAAA
CCGAAAAACAATGACTTAGTAGGTGCCTGGATTTCTTTGTGATTCATTGT
GAACAATTTTCTTGGTGAGTTTTTCTGAAAGACTTGACAACCACCTTACA
ATTTTAATATCATTACATAAGGCACTGCATATCTAGTTAATGACTTTTCT
GTTATAATATGCAAGTTCGATCTATTTTCAATCATTATTCCATCAATCTG
TTCCAGATTTCCAGCAGGACAATATCCAGTGTACGCATTTCCAGGTGCAC
CTGGTAATTTCCCTTCTTTACCAGAACATCATTCTATCCAGAAGTATCTC
CATTTCTCAAAGTTGATCAATCGAATATCTGATGAATACATTGAAAATGA
GTTGGAAGGAAAACCGTTCTTGGCAATCCATCTGAGAAATGGGTTGGATA
TGGTGAGTCTGAAATGCTTTTTGATACATATTGAGTTTTTATCTCTTAGA
TCTGCTAGAATTACTAATTACTAGTTTTACACTACACTTGTGTATGTACT
ATCTACTTGCATGGATCTGGTTTCCCATAATAACGAAAGTGTATCCATTT
TTAGAACACATTACTCCACCATTTTGTCTTTAACCTTAAATTCAGAGAAA
ACCATTGCTTGTATGCATTTATTTCTATTCTAGACAAGAGTTTGTGATGA
AATTGACAACGATAAATATCACAGCCTATTCTCTTCTGCTCAATGCACCC
AACTAGAAGGTAAGTCGACTGTTCTCTATCTGGAATCCGATGTAAATATA
TTCACCCggcacgctaaagctctaaaggtaAGGAAGTTTCAACATATGAA
AGGCTtggattacggaatttcgctaaaCCGCGTCACGGATTTTGCAGCAG
GAAGCCCGAACCAAAATTCTCGTTTTTGAGGATTGAAATTACTTTCAGGC
TTAGACCGGGGATACGGCACATCTATAGCCGACCATTATCCCTCCCCTTT
AAGTACTATGAATTACAAAACGCCAGACTAAAATCAAATAAGCGAATatc
cttttttctaaaaaaattacaaaaatgtgAAGATAATTAACCTGGGAATG
TGAGTGGGTCAATTAATCCTGCATGGTTTTCCTTGATATAATCAAGTCTT
GATTTTTCTACCAATCAGGCAATCCAAAACTGACATCAGCGATGTGTAAC
CCACCTAAGGAGGACATCATCCAAAAAGTAGTTCACCATATCAAAAAGAT
GAAATTGAAAGCCCTGTTCATCGCCACCGATAATGATCCAATgataaaag
atttcaagaaGGCCTTCAAAGCGATCAAAGTTAGTACAATTTCCAATTTC
CTTTATCCAAgcaaatacattttttatttcctaAAAGCTGACACGAGCGG
CTAGATGGAGTTTTTATGAGATACTTAAATAatattggtcatttgaagtt
ataaaaatgacgcgttctttagaaaaagtaacaaaattgttttaataCTA
GTTAtggaccaaccaaatcaaataagagcttgtaaaaactccatctcgtc
ccttttttaaacctaaagatactttaattgctgagcactAAGCAAAAAGA
TAACGAGTACcatttttcactgatttttaatgtctttggtatgaccggag
cggggattgaacccacaaccttgttcACCGTAGCCGGATGATCTACCttt
gcactacggtcgcttttCATGTGCAACGAGACGACAGAAAACCAGCAGAA
ATATTGATAGTTTGAGTTTCTTAACCCTTTCTAGTTTTAAAGAGCTTATA
CTCTCTATATATGGTGAATTCTTTTCTTTTGCTGATCCTAGAACAATAGT
TTTATCAGTAAATCCTTTGTTGAAGAGAAATACTTTTATGGGGCGTTCAG
GAGAACTTCTACCTAAAAATAAATCTAGCATTACTCTAACAAATAATTCA
CTGCATAGCCAATACGTGCCCCGTGTAACAACAAATATTCTACCTCTCTC
GTTTAGTTTCCAGTCAGTATTCATCGGCGTGTACACAAAGATGTCGAAAC
TGAATGTGATGGACCGCTAATCGATATTGCTCTCATGAGTAAAGCTGACA
TGTTTATTGGCAATTGTGTTTCGTCTTTCACGGCGTTCGTGAGACGCCAA
CGTTTCAGTCGTGGAAAACAAATGGATTTCTTTAACTTGAAATCCAATAA
ACCTCTTCATACAGAACTTTAGAATTTGACTAcctaaattttttattaca
taGTGCTTGGACACTAAGACCTAAGGATACTGGGtgaatttttcccattt
tcaccctgaaatgtgaccaaaatgactaaaactagacgaaaaattgaaaa
actttttttaatctcaccctgaaaattgtcaaaaggtcgaccctgtcaga
tacatcttgaaaattagtaaatttgggaccctggcCAGCGATGGAGTTCA
TAAGTGCGCAAGTCAGTGCAATAGCTTCAGTCATTTGAAGTCATTCTATC
CAATTCTCTCCCACTTGTTTATTAAGCACAATGATTGATAGATGCTTTGA
TtggtattttatttttctcataataatttttgaattCATGAAATTCATTA
CGCAATGTATTCTACGGATACCCAGTAAATTTCCCGGTAAATTTAAGCTa
gagaaaaatagtttcaaatTAGCCAATAAATAAATTGTTTTAATTTGACA
CTGCTGGCGAAAGCTGGAGTGTTTCCATACGAGAAAACATTACGTACTAG
TATGCAACGAATATCATCAGGAACCTTACTTGTTTGTTTTGGTGGTTGTG
GATATGTACCTCGGGTGTTATTGGTTTGATTTGATTGCACCCAATGGTGA
TTTCTAagttcaaattgattttaaagaaCTTGCCTTTTACTAATGTTTGT
AAAACATTTGAATtgctaattttttatcaatatttataTGCATAcaatta
gaattttttaataattgcattttttatttacattttgaagaaaaaagaaa
tttcatacaAAAACAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003433	XLOC_003433	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000062	supercontig	sc0000062:505264..510829 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.72015	6.0468	0.460597	1.78818	0	0	0	0	0	0	0	0	0	0	2.87717e-10	0	0	0	0	0	6.67633e-07	0.0119154	0	0	0	0.00467794

Blast

[Close]

BLAST of TCONS_00006016 vs. Swiss-Prot (Human)
Match: OFUT1 (GDP-fucose protein O-fucosyltransferase 1 OS=Homo sapiens GN=POFUT1 PE=1 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.660e-77
Identity = 140/376 (37.23%), Postives = 216/376 (57.45%), Query Frame = 2

Query:   62 SNGLDKNGYVVYCPCMGRFGNQADQLLGSMAFTKALNRTLILPHWVTYPSSM-PMSSKQIPFDRWFQIEPIREYQKVITMKKFMKDLAPKVWPAAERKGFCYR---PRSESEETCGMKEGNPFGPFWDHFGISFKDSVFHEELLWSTHKYNVEEWHRKFPAGQYPVYAFPGAPGNFPSLPEHHSIQKYLHFSKLINRISDEYIENELEGKPFLAIHLRNGLDMTRVCDEIDNDKYHSLF-SSAQCTQLEGNPK--LTSAMCNPPKEDIIQKVVHHIKKMKLKALFIATDNDPMXXXXXXXXXXXXXPVSIHRRVHKDVETECDGPLIDIALMSKADMFIGNCVSSFTAFVRRQRFSRGKQMDFFNLKSNKPLHTEL 1168
            +   D  GY++YCPCMGRFGNQAD  LGS+AF K LNRTL +P W+ Y     P ++  + + ++F++EP++ Y +VI+++ FM+ LAP  WP  +R  +C+     RS  ++TC MKEGNPFGPFWD F +SF  S     + +S   Y  E+W ++F   ++PV A PGAP  FP L EH  +QKY+ +S  + +  +  I   L  +P++ IHLR G D    C  + +    S F +S QC     +    LT  MC P  ++I + V   ++ +  +++++ATD++  + + ++ FK     VS+   V +          +D+ ++ +AD FIGNCVSSFTAFV+R+R  +G+   FF +     L  E 
Sbjct:   26 AGSWDPAGYLLYCPCMGRFGNQADHFLGSLAFAKLLNRTLAVPPWIEYQHHKPPFTNLHVSYQKYFKLEPLQAYHRVISLEDFMEKLAPTHWPPEKRVAYCFEVAAQRSPDKKTCPMKEGNPFGPFWDQFHVSFNKSELFTGISFSA-SYR-EQWSQRFSPKEHPVLALPGAPAQFPVLEEHRPLQKYMVWSDEMVKTGEAQIHAHLV-RPYVGIHLRIGSDWKNACAMLKDGTAGSHFMASPQCVGYSRSTAAPLTMTMCLPDLKEIQRAVKLWVRSLDAQSVYVATDSESYVPELQQLFKGKVKVVSLKPEVAQ----------VDLYILGQADHFIGNCVSSFTAFVKRERDLQGRPSSFFGMDRPPKLRDEF 388

The following BLAST results are available for this feature:

BLAST of TCONS_00006016 vs. Swiss-Prot (Human)

BLAST of TCONS_00006016 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
OFUT1	2.660e-77	37.23	GDP-fucose protein O-fucosyltransferase 1 OS=Homo ...	[more]

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TCONS_00006016 (transcript) - C. hemisphaerica