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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006013 ID=TCONS_00006013|Name=TCONS_00006013|organism=Clytia hemisphaerica|type=transcript|length=1968bpRun BLAST on NCBI protein sequence of TCONS_00006013-protein >TCONS_00006013-protein ID=TCONS_00006013-protein|Name=TCONS_00006013-protein|organism=Clytia hemisphaerica|type=polypeptide|length=384bp MIMKLFFIFLISIQLSNGLDKNGYVVYCPCMGRFGNQADQLLGSMAFTKARun BLAST on NCBI transcript from alignment at sc0000062:505261..510829+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006013 ID=TCONS_00006013|Name=TCONS_00006013|organism=Clytia hemisphaerica|type=transcript|length=5569bp|location=Sequence derived from alignment at sc0000062:505261..510829+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000062:505261..510829+ >TCONS_00006013 ID=TCONS_00006013|Name=TCONS_00006013|organism=Clytia hemisphaerica|type=CDS|length=11550bp|location=Sequence derived from alignment at sc0000062:505261..510829+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00006013 vs. Swiss-Prot (Human)
Match: OFUT1 (GDP-fucose protein O-fucosyltransferase 1 OS=Homo sapiens GN=POFUT1 PE=1 SV=1) HSP 1 Score: 254.988 bits (650), Expect = 2.716e-77 Identity = 140/376 (37.23%), Postives = 216/376 (57.45%), Query Frame = 2
Query: 65 SNGLDKNGYVVYCPCMGRFGNQADQLLGSMAFTKALNRTLILPHWVTYPSSM-PMSSKQIPFDRWFQIEPIREYQKVITMKKFMKDLAPKVWPAAERKGFCYR---PRSESEETCGMKEGNPFGPFWDHFGISFKDSVFHEELLWSTHKYNVEEWHRKFPAGQYPVYAFPGAPGNFPSLPEHHSIQKYLHFSKLINRISDEYIENELEGKPFLAIHLRNGLDMTRVCDEIDNDKYHSLF-SSAQCTQLEGNPK--LTSAMCNPPKEDIIQKVVHHIKKMKLKALFIATDNDPMXXXXXXXXXXXXXPVSIHRRVHKDVETECDGPLIDIALMSKADMFIGNCVSSFTAFVRRQRFSRGKQMDFFNLKSNKPLHTEL 1171
+ D GY++YCPCMGRFGNQAD LGS+AF K LNRTL +P W+ Y P ++ + + ++F++EP++ Y +VI+++ FM+ LAP WP +R +C+ RS ++TC MKEGNPFGPFWD F +SF S + +S Y E+W ++F ++PV A PGAP FP L EH +QKY+ +S + + + I L +P++ IHLR G D C + + S F +S QC + LT MC P ++I + V ++ + +++++ATD++ + + ++ FK VS+ V + +D+ ++ +AD FIGNCVSSFTAFV+R+R +G+ FF + L E
Sbjct: 26 AGSWDPAGYLLYCPCMGRFGNQADHFLGSLAFAKLLNRTLAVPPWIEYQHHKPPFTNLHVSYQKYFKLEPLQAYHRVISLEDFMEKLAPTHWPPEKRVAYCFEVAAQRSPDKKTCPMKEGNPFGPFWDQFHVSFNKSELFTGISFSA-SYR-EQWSQRFSPKEHPVLALPGAPAQFPVLEEHRPLQKYMVWSDEMVKTGEAQIHAHLV-RPYVGIHLRIGSDWKNACAMLKDGTAGSHFMASPQCVGYSRSTAAPLTMTMCLPDLKEIQRAVKLWVRSLDAQSVYVATDSESYVPELQQLFKGKVKVVSLKPEVAQ----------VDLYILGQADHFIGNCVSSFTAFVKRERDLQGRPSSFFGMDRPPKLRDEF 388 The following BLAST results are available for this feature:
BLAST of TCONS_00006013 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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