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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006012 ID=TCONS_00006012|Name=TCONS_00006012|organism=Clytia hemisphaerica|type=transcript|length=2245bpRun BLAST on NCBI transcript from alignment at sc0000062:414424..426583+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006012 ID=TCONS_00006012|Name=TCONS_00006012|organism=Clytia hemisphaerica|type=transcript|length=12160bp|location=Sequence derived from alignment at sc0000062:414424..426583+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00006012 vs. Swiss-Prot (Human)
Match: ANPRA (Atrial natriuretic peptide receptor 1 OS=Homo sapiens GN=NPR1 PE=1 SV=1) HSP 1 Score: 516.538 bits (1329), Expect = 3.001e-168 Identity = 268/523 (51.24%), Postives = 357/523 (68.26%), Query Frame = 3
Query: 54 TRGNIQLFTKVAIYKSQLVACKVFHKNKFITNRIVLQELRDMLDLSHENINPFLGIVLNPQSSNMIIYQYCPKGSLQDVLSNEDIKLDSTFLSSFVKDIVKGMVYLHHSSLKSHGRLKSCNCIVDSRWLIKITDFGTNFLRNGLDPLNKIDDNARYTGLLWTAPELLRMSNPLPRGTQKADVYSFGIILQEIITRSEPFAMHELD--AVDIIRRVKAVSDPPFRPAVQKYHAAQSFSDSNSSNEMYQLMLNCLTEDPTERPTFSETRRFMKKMSHGKETNVFEHMVVMLEKYSNHLEKVVEDRTKQLIVEKKKTDDLVHRMLPKFIADQLKNNGSVEAEWYDEVTVYFSDVVGFTTISGKSTPMQVVDFLNDLYTLFDNVISTYDAYKVETIGDAYMVVSGLPVRNGHLHAAQIADLSLHLLRAVDEEFVIRHQPQNKLRIRIGLHSGAVAAGVVGLTMPRYCLFGDTVNVASRMESNGIALRIHISQQTKDLLESHNDNYHIEPRDQKVELKNVGIVQTYWL 1616
T G Q+F K A YK LVA K ++ + R VL EL+ M D+ +E++ F+G +P + I+ +YCP+GSLQD+L NE I LD F S DIVKGM++LH+ ++ SHG LKS NC+VD R+++KITD+G R+ LDP + Y LWTAPELLRM++P RG+Q DVYSFGIILQEI RS F + LD +II RV PPFRP++ A QS + E+ LM C EDP ERP F + R ++K + +N+ ++++ +E+Y+N+LE++VE+RT+ + EK+K + L++++LP +A+QLK +V+AE +D VT+YFSD+VGFT +S +STPMQVV LNDLYT FD VI +D YKVETIGDAYMVVSGLPVRNG LHA ++A ++L LL AV F IRH+PQ +LR+RIG+H+G V AGVVGL MPRYCLFGDTVN ASRMESNG AL+IH+S +TK +LE + +E R VE+K G V+TYWL
Sbjct: 546 TEGQFQVFAKTAYYKGNLVAVKRVNRKRIELTRKVLFELKHMRDVQNEHLTRFVGACTDPPNI-CILTEYCPRGSLQDILENESITLDWMFRYSLTNDIVKGMLFLHNGAICSHGNLKSSNCVVDGRFVLKITDYGLESFRD-LDPEQ---GHTVYAKKLWTAPELLRMASPPVRGSQAGDVYSFGIILQEIALRSGVFHVEGLDLSPKEIIERVTRGEQPPFRPSL----ALQSHLE-----ELGLLMQRCWAEDPQERPPFQQIRLTLRKFNRENSSNILDNLLSRMEQYANNLEELVEERTQAYLEEKRKAEALLYQILPHSVAEQLKRGETVQAEAFDSVTIYFSDIVGFTALSAESTPMQVVTLLNDLYTCFDAVIDNFDVYKVETIGDAYMVVSGLPVRNGRLHACEVARMALALLDAV-RSFRIRHRPQEQLRLRIGIHTGPVCAGVVGLKMPRYCLFGDTVNTASRMESNGEALKIHLSSETKAVLEEFG-GFELELRGD-VEMKGKGKVRTYWL 1051 The following BLAST results are available for this feature:
BLAST of TCONS_00006012 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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