TCONS_00006003 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00006003
Unique Name	TCONS_00006003
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	517

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000062:292049..293480+
coding sequence from alignment at sc0000062:292049..293480+

transcript sequence

>TCONS_00006003 ID=TCONS_00006003|Name=TCONS_00006003|organism=Clytia hemisphaerica|type=transcript|length=517bp
GAAGAATCTGACGAGATGTCTGGCTCCGTTTCTGATTGTCAGGAAATCAC
CGATTTTCCACTGAAGTCTGACGTACAGCATCCATATGATGAAATTGTTG
ATGACGACTTCTTCGCCAGCAATAACATCAATCTATTACTAACCAATacg
aattttgttgaaaatgatgacgagTTTAGTGCAACAGAATCAAGTCCTGA
TGATTCTCTTGATTCAATGGGAAGTGATGAGATGGCCAGAGCTTTAGGAT
GTGCATCACAAACGCAAACCTTGAGAACTGATCAAGAAATTATGATACAT
GAAGAGGAGCTCTTTATGCAAGATTATGTCAACAAAATTAAACTTGTCAA
CAGTTTAGTAATTGAAACACCAGAGGACTCTGAAGCTTCTGGAGTAACAA
CAGAGAGTAGTATGAACACTGACGATTTACAAGGGAGAATAGCAGCCAAG
TTAAACTCCATCTCAAATCGAATTCAAGATCAAAGTTTAACCAATGGAAT
TCCTGTTGTAAGTCAAC

Run BLAST on NCBI

protein sequence of TCONS_00006003-protein

>TCONS_00006003-protein ID=TCONS_00006003-protein|Name=TCONS_00006003-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
EESDEMSGSVSDCQEITDFPLKSDVQHPYDEIVDDDFFASNNINLLLTNT
NFVENDDEFSATESSPDDSLDSMGSDEMARALGCASQTQTLRTDQEIMIH
EEELFMQDYVNKIKLVNSLVIETPEDSEASGVTTESSMNTDDLQGRIAAK
LNSISNRIQDQSLTNGIPVVSQ

Run BLAST on NCBI

transcript from alignment at sc0000062:292049..293480+

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00006003 ID=TCONS_00006003|Name=TCONS_00006003|organism=Clytia hemisphaerica|type=transcript|length=1432bp|location=Sequence derived from alignment at sc0000062:292049..293480+ (Clytia hemisphaerica)
GAAGAATCTGACGAGATGTCTGGCTCCGTTTCTGATTGTCAGGAAATCAC
CGATTTTCCACTGAAGTCTGACGTACAGCATCCATATGATGAAATTGTTG
ATGACGACTTCTTCGCCAGCAATAACATCAATCTATTACTAACCAATacg
aattttgttgaaaatgatgacgagTTTAGTGCAACAGAATCAAGTCCTGA
TGATTCTCTTGATTCAATGGGAAGTGATGAGATGGCCAGAGCTTTAGGAT
GTGCATCACAAACGCAAACCTTGAGAACTGATCAAGAAATTATGATACAT
GAAGAGGAGCTCTTTATGCAAGATTATGTCAACAAAATTAAACGTTAGTT
TGGATTTCTCGTTTCTTTGCTTATACAGTCGAGTCCTCATAACTCGAAGA
CGCACTGGGAGCACAAATTTGTTGGAGTTCCCTAAggaaattttgactaa
tgtttttaaggccttgttaactgaagggacgagaaaactttttcgagtta
atgAGATATTCGAGTCATAGAGGTCCGAGTTAAAGAGATTCTACTTTTAC
GTGTATTAACTCAATTAAAGTTCTTAACACATAATATCTGATAGGGAAGT
CTCCCTTGAACGATTGCTGCAAGCCAGATAGTTGAATTTGGTTGAAAGAT
AGTGGAGTGATACACCTCTGTCTCAATGATCCGGTTAGATACTGTTAAAC
CGGTGgactttttgaattctattgttcacaGCTTAATGATAGTAAAGTCA
CACAACTTTAAAGATTTAAACAATACAAATGAGTAGTAGATTGACCTTTG
ATATTGACCTTTGATATTTCCTCTTTAAAGTTGCCTCTGTTTTGCCCTAT
CTTCTTTGTCGCTGTAATGACACCAatatttcttttacttttatagTTGT
CAACAGTTTAGTAATTGAAACACCAGAGGACTCTGAAGCTTCTGGAGTAA
CAACAGAGAGTAGTATGAACACTGACGATTTACAAGGTGAgaaattatta
tattttatcTATCTTCATTTGCATAGAAACCACTAAAATTGCTTGAGCAA
TTACTCTAAGTTTCGTATCTCTTGttcaaatattgaaaatcaGACGCGGA
ACTGGAACCTTAAATTGCAAGTTTATGCATCGAAGGGAAGATTTGATACC
CACCCAAATCATTGCTTCAATAATGATACAGGAAAGGTCTAGAAAAAGTA
ACTTGGAAAAACGTTTATTTTAAGGTTCTTGCCCCGGGAAATCAGAGCAA
CATTTTCACTACGACCAACAGATTTTCCTGAATTATCATTATTACCAGTT
ATTACTGATTATTACTTAACccaaatattcacttttttactTTCTAAGGG
AGAATAGCAGCCAAGTTAAACTCCATCTCAAATCGAATTCAAGATCAAAG
TTTAACCAATGGAATTCCTGTTGTAAGTCAAC

Coding sequence (CDS) from alignment at sc0000062:292049..293480+

>TCONS_00006003 ID=TCONS_00006003|Name=TCONS_00006003|organism=Clytia hemisphaerica|type=CDS|length=1548bp|location=Sequence derived from alignment at sc0000062:292049..293480+ (Clytia hemisphaerica)
GAAGAATCTGACGAGATGTCTGGCTCCGTTTCTGATTGTCAGGAAATCAC
CGATTTTCCACTGAAGTCTGACGTACAGCATCCATATGATGAAATTGTTG
ATGACGACTTCTTCGCCAGCAATAACATCAATCTATTACTAACCAATacg
aattttgttgaaaatgatgacgagTTTAGTGCAACAGAATCAAGTCCTGA
TGATTCTCTTGATTCAATGGGAAGTGATGAGATGGCCAGAGCTTTAGGAT
GTGCATCACAAACGCAAACCTTGAGAACTGATCAAGAAATTATGATACAT
GAAGAGGAGCTCTTTATGCAAGATTATGTCAACAAAATTAAACTTGTCAA
CAGTTTAGTAATTGAAACACCAGAGGACTCTGAAGCTTCTGGAGTAACAA
CAGAGAGTAGTATGAACACTGACGATTTACAAGGGAGAATAGCAGCCAAG
TTAAACTCCATCTCAAATCGAATTCAAGATCAAAGTTTAACCAATGGAAT
TCCTGTTGTAAGTCAAGAAGAATCTGACGAGATGTCTGGCTCCGTTTCTG
ATTGTCAGGAAATCACCGATTTTCCACTGAAGTCTGACGTACAGCATCCA
TATGATGAAATTGTTGATGACGACTTCTTCGCCAGCAATAACATCAATCT
ATTACTAACCAATacgaattttgttgaaaatgatgacgagTTTAGTGCAA
CAGAATCAAGTCCTGATGATTCTCTTGATTCAATGGGAAGTGATGAGATG
GCCAGAGCTTTAGGATGTGCATCACAAACGCAAACCTTGAGAACTGATCA
AGAAATTATGATACATGAAGAGGAGCTCTTTATGCAAGATTATGTCAACA
AAATTAAACTTGTCAACAGTTTAGTAATTGAAACACCAGAGGACTCTGAA
GCTTCTGGAGTAACAACAGAGAGTAGTATGAACACTGACGATTTACAAGG
GAGAATAGCAGCCAAGTTAAACTCCATCTCAAATCGAATTCAAGATCAAA
GTTTAACCAATGGAATTCCTGTTGTAAGTCAAGAAGAATCTGACGAGATG
TCTGGCTCCGTTTCTGATTGTCAGGAAATCACCGATTTTCCACTGAAGTC
TGACGTACAGCATCCATATGATGAAATTGTTGATGACGACTTCTTCGCCA
GCAATAACATCAATCTATTACTAACCAATacgaattttgttgaaaatgat
gacgagTTTAGTGCAACAGAATCAAGTCCTGATGATTCTCTTGATTCAAT
GGGAAGTGATGAGATGGCCAGAGCTTTAGGATGTGCATCACAAACGCAAA
CCTTGAGAACTGATCAAGAAATTATGATACATGAAGAGGAGCTCTTTATG
CAAGATTATGTCAACAAAATTAAACTTGTCAACAGTTTAGTAATTGAAAC
ACCAGAGGACTCTGAAGCTTCTGGAGTAACAACAGAGAGTAGTATGAACA
CTGACGATTTACAAGGGAGAATAGCAGCCAAGTTAAACTCCATCTCAAAT
CGAATTCAAGATCAAAGTTTAACCAATGGAATTCCTGTTGTAAGTCAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003427	XLOC_003427	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00006003-protein	TCONS_00006003-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00006003-exon-sc0000062-1491911889:292049..292391	TCONS_00006003-exon-sc0000062-1491911889:292049..292391	Clytia hemisphaerica	exon
TCONS_00006003-exon-sc0000062-1510915933:292049..292391	TCONS_00006003-exon-sc0000062-1510915933:292049..292391	Clytia hemisphaerica	exon
TCONS_00006003-exon-sc0000062-1575043694:292049..292391	TCONS_00006003-exon-sc0000062-1575043694:292049..292391	Clytia hemisphaerica	exon
TCONS_00006003-exon-sc0000062-1491911889:292945..293034	TCONS_00006003-exon-sc0000062-1491911889:292945..293034	Clytia hemisphaerica	exon
TCONS_00006003-exon-sc0000062-1510915933:292945..293034	TCONS_00006003-exon-sc0000062-1510915933:292945..293034	Clytia hemisphaerica	exon
TCONS_00006003-exon-sc0000062-1575043694:292945..293034	TCONS_00006003-exon-sc0000062-1575043694:292945..293034	Clytia hemisphaerica	exon
TCONS_00006003-exon-sc0000062-1491911889:293397..293480	TCONS_00006003-exon-sc0000062-1491911889:293397..293480	Clytia hemisphaerica	exon
TCONS_00006003-exon-sc0000062-1510915933:293397..293480	TCONS_00006003-exon-sc0000062-1510915933:293397..293480	Clytia hemisphaerica	exon
TCONS_00006003-exon-sc0000062-1575043694:293397..293480	TCONS_00006003-exon-sc0000062-1575043694:293397..293480	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000062	supercontig	sc0000062:292049..293480 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.127597	0	0.122749	0	0.277283	0	0	0	0.0767142	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00006003 vs. Swiss-Prot (Human)

BLAST of TCONS_00006003 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00006003 (transcript) - C. hemisphaerica