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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006001 ID=TCONS_00006001|Name=TCONS_00006001|organism=Clytia hemisphaerica|type=transcript|length=2858bpRun BLAST on NCBI protein sequence of TCONS_00006001-protein >TCONS_00006001-protein ID=TCONS_00006001-protein|Name=TCONS_00006001-protein|organism=Clytia hemisphaerica|type=polypeptide|length=524bp MKNTMLDNFACISISKERSSNSGLLIKKGSIKENIKPEQWAKKFRSNKRSRun BLAST on NCBI transcript from alignment at sc0000062:219993..246414+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006001 ID=TCONS_00006001|Name=TCONS_00006001|organism=Clytia hemisphaerica|type=transcript|length=26422bp|location=Sequence derived from alignment at sc0000062:219993..246414+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000062:219993..246414+ >TCONS_00006001 ID=TCONS_00006001|Name=TCONS_00006001|organism=Clytia hemisphaerica|type=CDS|length=20475bp|location=Sequence derived from alignment at sc0000062:219993..246414+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006001 vs. Swiss-Prot (Human)
Match: ST38L (Serine/threonine-protein kinase 38-like OS=Homo sapiens GN=STK38L PE=1 SV=3) HSP 1 Score: 652.899 bits (1683), Expect = 0.000e+0 Identity = 305/444 (68.69%), Postives = 371/444 (83.56%), Query Frame = 2
Query: 320 ISRTTMDKVAKTKVTIEAYYTTLIAHTRERRERVKQLEEAMEREGLDDKDKETRRALYALRETEFLRLKRTRIGREDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKKEMLAKEQVAHVRAERDILAESDNPWITKMYYSFQDQTCLYLVMEFLPGGDLMTLLIRKDTFTEAQTQFYMAESILAINFIHSLGFIHRDIKPDNLLLDARGHIKLSDFGLCTGLKKAHRTEFYRGITPANVAELC-DPIGTKQKAMTWKRNRRQMAYSTVGTPDYIAPEVFTQSGYEKSCDWWSLGVIMFEMLIGYPPFCSETPQETYRKVMNWRETLVFPVEMPITNTSKNLILSFCTDADRRLGRHQQSIDDIQTHPFFRGVDWEHTRDRPAAIPIEVKSIDDTSNFDDFPDVDLSWNAIPEKSETN--NKDWVFLNYTFKRFEGLTQRG 1642
+S T ++V K+T+E +Y+ LI ER R K+LE AME EGL D++K+ RR+ +A +ETEFLRLKRTR+G +DFESLKVIGRGAFGEVRLVQKKDTGH+YAMKILRK +ML KEQVAH+RAERDIL E+D W+ KM+YSFQD+ LYL+MEFLPGGD+MTLL++KDT TE +TQFY++E++LAI+ IH LGFIHRDIKPDNLLLDA+GH+KLSDFGLCTGLKKAHRTEFYR +T ++ + +K+KA TWK+NRRQ+AYSTVGTPDYIAPEVF Q+GY K CDWWSLGVIM+EMLIGYPPFCSETPQETYRKVMNW+ETLVFP E+PI+ +K+LIL FC D++ R+G +++I+ HPFF GVDWEH R+RPAAIPIE+KSIDDTSNFDDFP+ D+ +P +E + +KDWVFLNYT+KRFEGLTQRG
Sbjct: 13 MSNHTRERVTVAKLTLENFYSNLILQHEERETRQKKLEVAMEEEGLADEEKKLRRSQHARKETEFLRLKRTRLGLDDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKSDMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIMEFLPGGDMMTLLMKKDTLTEEETQFYISETVLAIDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQETYRKVMNWKETLVFPPEVPISEKAKDLILRFCIDSENRIG--NSGVEEIKGHPFFEGVDWEHIRERPAAIPIEIKSIDDTSNFDDFPESDI-LQPVPNTTEPDYKSKDWVFLNYTYKRFEGLTQRG 453 The following BLAST results are available for this feature:
BLAST of TCONS_00006001 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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