TCONS_00005989 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005989
Unique NameTCONS_00005989
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length522

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005989 ID=TCONS_00005989|Name=TCONS_00005989|organism=Clytia hemisphaerica|type=transcript|length=522bp
AGAGACAGCGtcatttctttataaaaacatttaaaactaaGGATTTGTAA
TTCATTAACAAAGAAATTTGGCTGAGAAATGTATTTTCAGAAAGTCGAAT
GTCTTCAGGGACATGCCGAAATATGACAAAAAGACAAAGAGAAGCTATCA
AAGTTTTAGAATTTCAATGGCACTTACTGCTCTGTAAAGTAGAAAAATTT
TGCCTGTCCATATTTTTTTGCCCATCTTGTATAATAACAAACTGACAAAG
TTCAAAATCACGATTCTTATTGTCTTGttccatgaacatataaacgactg
gaaatccatctcctttgtctttttgtagaaagggctgctagcttcgttgc
cgcctcgttaaaagcataaaataaaacaatagattttgatgatataccac
ttgggaataccttacTAACAACGTTAAAACTTCGAcgaaagtctctgttg
ttctactcttctcaagtcttttatctatatcataacaaagataacagagg
caaaatcatcgtcagcttgtca
Run BLAST on NCBI

transcript from alignment at sc0000061:1078774..1079295

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005989 ID=TCONS_00005989|Name=TCONS_00005989|organism=Clytia hemisphaerica|type=transcript|length=522bp|location=Sequence derived from alignment at sc0000061:1078774..1079295 (Clytia hemisphaerica)
tgacaagctgacgatgattttgcctctgttatctttgttatgatatagat
aaaagacttgagaagagtagaacaacagagactttcgTCGAAGTTTTAAC
GTTGTTAgtaaggtattcccaagtggtatatcatcaaaatctattgtttt
attttatgcttttaacgaggcggcaacgaagctagcagccctttctacaa
aaagacaaaggagatggatttccagtcgtttatatgttcatggaaCAAGA
CAATAAGAATCGTGATTTTGAACTTTGTCAGTTTGTTATTATACAAGATG
GGCAAAAAAATATGGACAGGCAAAATTTTTCTACTTTACAGAGCAGTAAG
TGCCATTGAAATTCTAAAACTTTGATAGCTTCTCTTTGTCTTTTTGTCAT
ATTTCGGCATGTCCCTGAAGACATTCGACTTTCTGAAAATACATTTCTCA
GCCAAATTTCTTTGTTAATGAATTACAAATCCttagttttaaatgttttt
ataaagaaatgaCGCTGTCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003422XLOC_003422Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005989-exon-sc0000061-1491911889:1078774..1079295TCONS_00005989-exon-sc0000061-1491911889:1078774..1079295Clytia hemisphaericaexon
TCONS_00005989-exon-sc0000061-1510915933:1078774..1079295TCONS_00005989-exon-sc0000061-1510915933:1078774..1079295Clytia hemisphaericaexon
TCONS_00005989-exon-sc0000061-1575043694:1078774..1079295TCONS_00005989-exon-sc0000061-1575043694:1078774..1079295Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:1078774..1079295 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.01037	0.666661	0.168667	1.43508	5.02879	3.51359	7.02548	8.4049	0.83384	0.500475	0	1.63822	1.2783	1.79182	0.865492	0.147791	0	0.438647	2.05483	2.1291	0.794957	0.265571	0.751037	0.620988	0.7531	1.30181	1.09385	0.873326	0.863832	1.05865
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005989 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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