TCONS_00005987 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005987
Unique NameTCONS_00005987
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length528

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005987 ID=TCONS_00005987|Name=TCONS_00005987|organism=Clytia hemisphaerica|type=transcript|length=528bp
TTGCGATTCTTGATTTTTATGTTGTGGAAGGATTTCAGAGGATGTCATTT
TCTCCATTGGATTTAATATTTCGGGTGAATAGTTTCTAAATGTCTTGTCA
AGATCTTCATGGTGTTGTGGAAGGAATTCAGAAGATGTCAAGAATAGTTC
TGCGTCAATATCAACAACACAGTTGCTTTCAccagtatttgaacataaaa
caGGCGGTATCTCAATTATCCTTTTGTCCTCACATCTGAATTTCAATGAT
GGGGAATCAATGTCCGAAATACGTTCCGAATCTGGAGAATCTTCCTCGAT
TTTATCATCAGGCTTCAATGCTTCAGGTGAAATATCAATAAAATATTGGA
TATCATTTTTAACAGTACTGATCACCTTCTTCGTTTCATTTTTCCCGTAC
AAATTCAACAATAGATATGTCCTTAAACTTTTCTTGTCTTTCTCATCATA
GTCTTGGTCATCTTCCAGTAGTTTTAAACAATCCTCCATAGTTGGCTTTT
CACCAGTGGGAAATTTCCTCAATATCTT
Run BLAST on NCBI

protein sequence of TCONS_00005987-protein

>TCONS_00005987-protein ID=TCONS_00005987-protein|Name=TCONS_00005987-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
KILRKFPTGEKPTMEDCLKLLEDDQDYDEKDKKSLRTYLLLNLYGKNETK
KVISTVKNDIQYFIDISPEALKPDDKIEEDSPDSERISDIDSPSLKFRCE
DKRIIEIPPVLCSNTGESNCVVDIDAELFLTSSEFLPQHHEDLDKTFRNY
SPEILNPMEKMTSSEILPQHKNQESQ
Run BLAST on NCBI

transcript from alignment at sc0000061:992370..992897

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005987 ID=TCONS_00005987|Name=TCONS_00005987|organism=Clytia hemisphaerica|type=transcript|length=528bp|location=Sequence derived from alignment at sc0000061:992370..992897 (Clytia hemisphaerica)
AAGATATTGAGGAAATTTCCCACTGGTGAAAAGCCAACTATGGAGGATTG
TTTAAAACTACTGGAAGATGACCAAGACTATGATGAGAAAGACAAGAAAA
GTTTAAGGACATATCTATTGTTGAATTTGTACGGGAAAAATGAAACGAAG
AAGGTGATCAGTACTGTTAAAAATGATATCCAATATTTTATTGATATTTC
ACCTGAAGCATTGAAGCCTGATGATAAAATCGAGGAAGATTCTCCAGATT
CGGAACGTATTTCGGACATTGATTCCCCATCATTGAAATTCAGATGTGAG
GACAAAAGGATAATTGAGATACCGCCtgttttatgttcaaatactggTGA
AAGCAACTGTGTTGTTGATATTGACGCAGAACTATTCTTGACATCTTCTG
AATTCCTTCCACAACACCATGAAGATCTTGACAAGACATTTAGAAACTAT
TCACCCGAAATATTAAATCCAATGGAGAAAATGACATCCTCTGAAATCCT
TCCACAACATAAAAATCAAGAATCGCAA

Coding sequence (CDS) from alignment at sc0000061:992370..992897

>TCONS_00005987 ID=TCONS_00005987|Name=TCONS_00005987|organism=Clytia hemisphaerica|type=CDS|length=528bp|location=Sequence derived from alignment at sc0000061:992370..992897 (Clytia hemisphaerica)
AAGATATTGAGGAAATTTCCCACTGGTGAAAAGCCAACTATGGAGGATTG
TTTAAAACTACTGGAAGATGACCAAGACTATGATGAGAAAGACAAGAAAA
GTTTAAGGACATATCTATTGTTGAATTTGTACGGGAAAAATGAAACGAAG
AAGGTGATCAGTACTGTTAAAAATGATATCCAATATTTTATTGATATTTC
ACCTGAAGCATTGAAGCCTGATGATAAAATCGAGGAAGATTCTCCAGATT
CGGAACGTATTTCGGACATTGATTCCCCATCATTGAAATTCAGATGTGAG
GACAAAAGGATAATTGAGATACCGCCtgttttatgttcaaatactggTGA
AAGCAACTGTGTTGTTGATATTGACGCAGAACTATTCTTGACATCTTCTG
AATTCCTTCCACAACACCATGAAGATCTTGACAAGACATTTAGAAACTAT
TCACCCGAAATATTAAATCCAATGGAGAAAATGACATCCTCTGAAATCCT
TCCACAACATAAAAATCAAGAATCGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003420XLOC_003420Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005987-exon-sc0000061-1491911889:992370..992897TCONS_00005987-exon-sc0000061-1491911889:992370..992897Clytia hemisphaericaexon
TCONS_00005987-exon-sc0000061-1510915933:992370..992897TCONS_00005987-exon-sc0000061-1510915933:992370..992897Clytia hemisphaericaexon
TCONS_00005987-exon-sc0000061-1575043694:992370..992897TCONS_00005987-exon-sc0000061-1575043694:992370..992897Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005987-proteinTCONS_00005987-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:992370..992897 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.667293	0.433811	0	0.123197	0.449941	0	0.714925	0.803165	0.562315	0.232173	0.90141	0.518482	0.36983	0.768143	0.0631518	0.0677716	0.667912	0.427868	0.591123	1.11342	0.537647	0.944084	0.382552	0.347796	0.83585	2.02479	0	0	0.123441	0.251533
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005987 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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