TCONS_00005985 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005985
Unique NameTCONS_00005985
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length334

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005985 ID=TCONS_00005985|Name=TCONS_00005985|organism=Clytia hemisphaerica|type=transcript|length=334bp
NNTTCAACTCAAACCGTTCGTAGATGATGATGGCATCCTTCGTGTTGGTG
GTCGTATCAAGCATGCAAAAGTCGACTACACTCGTAAACATCAAATCGTC
ATCTGCAACAAACATCCCATCGCGAAAATTCTTACACGGCATTTCCACGA
ATCAAACTTCCACTGTGGACGTGAAGCAACACTTGCAATCCTTCGAAATC
AATTTTGGTTGATATCAGGCAaaaactttgtaagaactataATTAGAAAC
TGCAGTGCGTGTAAGATCATCCGAGCGACGACAAAATTCCCAATGATGAG
CGATATTCCAAAAGAACGTCTGGCAACGAACGNN
Run BLAST on NCBI

protein sequence of TCONS_00005985-protein

>TCONS_00005985-protein ID=TCONS_00005985-protein|Name=TCONS_00005985-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
XQLKPFVDDDGILRVGGRIKHAKVDYTRKHQIVICNKHPIAKILTRHFHE
SNFHCGREATLAILRNQFWLISGKNFVRTIIRNCSACKIIRATTKFPMMS
DIPKERLATNX
Run BLAST on NCBI

transcript from alignment at sc0000061:975471..975804

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005985 ID=TCONS_00005985|Name=TCONS_00005985|organism=Clytia hemisphaerica|type=transcript|length=334bp|location=Sequence derived from alignment at sc0000061:975471..975804 (Clytia hemisphaerica)
NNCGTTCGTTGCCAGACGTTCTTTTGGAATATCGCTCATCATTGGGAATT
TTGTCGTCGCTCGGATGATCTTACACGCACTGCAGTTTCTAATtatagtt
cttacaaagttttTGCCTGATATCAACCAAAATTGATTTCGAAGGATTGC
AAGTGTTGCTTCACGTCCACAGTGGAAGTTTGATTCGTGGAAATGCCGTG
TAAGAATTTTCGCGATGGGATGTTTGTTGCAGATGACGATTTGATGTTTA
CGAGTGTAGTCGACTTTTGCATGCTTGATACGACCACCAACACGAAGGAT
GCCATCATCATCTACGAACGGTTTGAGTTGAANN

Coding sequence (CDS) from alignment at sc0000061:975471..975804

>TCONS_00005985 ID=TCONS_00005985|Name=TCONS_00005985|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0000061:975471..975804 (Clytia hemisphaerica)
NNCGTTCGTTGCCAGACGTTCTTTTGGAATATCGCTCATCATTGGGAATT
TTGTCGTCGCTCGGATGATCTTACACGCACTGCAGTTTCTAATtatagtt
cttacaaagttttTGCCTGATATCAACCAAAATTGATTTCGAAGGATTGC
AAGTGTTGCTTCACGTCCACAGTGGAAGTTTGATTCGTGGAAATGCCGTG
TAAGAATTTTCGCGATGGGATGTTTGTTGCAGATGACGATTTGATGTTTA
CGAGTGTAGTCGACTTTTGCATGCTTGATACGACCACCAACACGAAGGAT
GCCATCATCATCTACGAACGGTTTGAGTTGAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003418XLOC_003418Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005985-exon-sc0000061-1491911889:975471..975804TCONS_00005985-exon-sc0000061-1491911889:975471..975804Clytia hemisphaericaexon
TCONS_00005985-exon-sc0000061-1510915933:975471..975804TCONS_00005985-exon-sc0000061-1510915933:975471..975804Clytia hemisphaericaexon
TCONS_00005985-exon-sc0000061-1575043694:975471..975804TCONS_00005985-exon-sc0000061-1575043694:975471..975804Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005985-proteinTCONS_00005985-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:975471..975804 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.283817	1.38383	0.964056	1.25757	12.2478	11.7126	7.29783	6.49053	3.34834	1.77748	0.862634	1.89021	0.377516	0.196027	0.322321	0.6918	0.852241	1.31028	0	0.315711	0.823231	0	0.325419	0.295853	1.21889	1.9037	0	0	0.945044	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005985 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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