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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005982 ID=TCONS_00005982|Name=TCONS_00005982|organism=Clytia hemisphaerica|type=transcript|length=2669bp
tttttattggtTATTTTAAAccttaatttattttcaatttattttttttc
tgtctAGAATTTTGTTCTAGTGTTAAATATAatacaaaataattatttac
aaCAAAATGATGAAGATAAAATTTACAAACAAAATATGTTACCTATaccc
ttaaaatgttttttatttataattacATGAACAATATCTTTTTTTACAAC
ATTATTAAAATCTACTCTAGGGCTCAAATATTGAACATAATAAACGATGC
AAATTTTGCTTACCAAAAAACTGCTAATTTAGCTTTTGTATGATTGCACt
cttaaaaaataatgattaagatttttttttaattcttaacaaaaatttct
caaaaaatagaaaaggatTAATAATACAAGTTTTAATGAATGACTTCACC
TAGAACTTCATAAATAGCTTTTTCAACACAACCTTTGCTCGATTTCCCAT
TCGCCACATGTTGGAATATTTTTTGCATGACAGAAATTTCACTTTGTAAA
TCAGTCGTATCATTAGATCGACTCAATAATTTGACTATTTCTTGTTTGAT
CATGTCTTTAGATTTTATATGACTGGCAAacaatttttgcatttcttcaC
TTGCTTGTTCCATTTCACGTAATTGTTTTCTCAgtttttgattcttttgt
tCTAATTCTCGTTGTNTAATTTGACTATTTCTTGTTTAATCATGTCTTTA
GATTTTATATGACTGGCAAacaatttttgcatttcttcaCTTGCTTGTTC
CATTTCACGTAATTGTTTTCTCAgtttttgattcttttgttCTAATTCTC
gttgtttttcgaagacttcCTTGATAGCTGTTTTCCGTTTTTCTCGGTAC
TGTTTTGAAGCTTCCTTATTTCGCTTCTTTTTATTGTATTCTGGGATTGC
CCCCTCCTCTTCGAGAATCTCGTCCTCGTGATTATCATTATCCTCTGCTA
ACACTTCCTTCTTAATCTCGTTTTCCTCTTTGATACTCGTTCCAAGTCCC
CTTATCTCATCATGACCAACCAAATTCCCAGAATTTGACAATCGGTTTTC
AAAGAGTTTTTGACCATGTTCTAACAAGAATTGTCCCCTGTTTTGGCTAT
AATTATCTTGATTCCGTTGGTCGATCTCGTTAACAGTTTCCGGACTATTA
CTGCATGATTTAATGAAATAGCTTGATAATTTCGACCGTTGTTGTTCATT
GTTCAAGTTATCGGCCACATTATTTAAACGCTGGACATTTTCAGGGAAAT
ATTTCTCTATTCCTTGGTTAGAGAAAACCAATCCTTTTGAACAGTTTGTT
GAAGTAGGGtatgttttgaaaacattgtCGGCACTACTGGAGCGAATACA
TAAATCATCCACATCCTCGTTATCCTCAACTTTAATTTCAACAGCAGATT
TTGCTCTCGAATAAACATTAAAAGCAGATGTAAACATACCCTTATCATGA
CCAATGTCTGACCTAGTCTCCAATCGAGGACTGGTAACTACTGGTGAAGA
AACTGGCGGCGAATGTCTTGGTACGGGCCGTTTTGGAAGTGAAGAACCGT
ATGAATCATCATCACTTGAACATGAAGATCGTCGACGTTTACCAGAACTC
CAATTTCTCATATTATCTTCGAAATATCTTTGATTTCTATATAAAACATT
GTCATTTGGATAGTGGTCTGACATCTGCTGGTAAAGTCCATATCGACAAG
AAATACAATCTTCCACACCACCAACGACGTCTATATTTTCGTCATCATCA
TCCTCTACCATAATATCTTCTTTTTCATTCTCGCTGTGAGGTCTGTTCGA
ATTTACGTGATTTATATCCTGGTGTATTGGTGTAGTTGATGATAGGTTTA
AATCGTGGGCTGGCGAAAGCGCTTTAAGCTCTTTCTGATGATGCTGCTGT
TCGTCTTCCGTGTTGCATGATCGTTTAATATCAGTACAGTAAGCAATATC
ATTTTTGTCAAAGTTCGTATTTCCTTCCCTTTCAATTTTAGTGGAATTTG
AACGAGTGTCTTTAGATAGAATTTCTTGGCCAAGCTTCTGGACCGTTTTC
CCATAGTCTACAAAACCTTCTTCGATGACCTCGGTGCATACTGAACTGCT
GATCTTTTTAGCAGGCTGCAGTAAGAACGCTCGGCAACGATTCGGTAAAG
GTGTATCATTCCCATAAGATTCACCAATCGATGTATTGTAACTTGTCATC
TGAATACAAAGGGTCATCTCCGTGCAATGTCCAGTTTTGAAAAACTGTCT
TCTGGATTCCTGCAACCTTTCCAGCGCGTTTTTATACTCTCTTGTAGTGA
ATatcttccaagaattttgataattttaccaACAATCTTTTGTTTTCCGA
GTTCCACGAATTAGAATTGTTATgacctttttttctttgcaCTTGACTTC
TGTTTACTAGTTAAACTTTTCTTGAAACTTCTCAGACTTTTCTTGCAATG
TTGTGTTCTGAGAAAGATCATTAGTTCTGAACTCTTCTATAGTTGACTTG
CATATGAATCTATCtcatttttcccaatttccTTATATATAGATATTGCA
GCGCTTTTTTGCCTTATCATCACTTGTCGTCATGGGATTGCATaattata
caaaaacaaaccccgcataaattttcataaattactgaCCGCAATATGTA
TGACATCACGAAATTATTT Run BLAST on NCBI protein sequence of TCONS_00005982-protein >TCONS_00005982-protein ID=TCONS_00005982-protein|Name=TCONS_00005982-protein|organism=Clytia hemisphaerica|type=polypeptide|length=521bp
MTLCIQMTSYNTSIGESYGNDTPLPNRCRAFLLQPAKKISSSVCTEVIEE
GFVDYGKTVQKLGQEILSKDTRSNSTKIEREGNTNFDKNDIAYCTDIKRS
CNTEDEQQHHQKELKALSPAHDLNLSSTTPIHQDINHVNSNRPHSENEKE
DIMVEDDDDENIDVVGGVEDCISCRYGLYQQMSDHYPNDNVLYRNQRYFE
DNMRNWSSGKRRRSSCSSDDDSYGSSLPKRPVPRHSPPVSSPVVTSPRLE
TRSDIGHDKGMFTSAFNVYSRAKSAVEIKVEDNEDVDDLCIRSSSADNVF
KTYPTSTNCSKGLVFSNQGIEKYFPENVQRLNNVADNLNNEQQRSKLSSY
FIKSCSNSPETVNEIDQRNQDNYSQNRGQFLLEHGQKLFENRLSNSGNLV
GHDEIRGLGTSIKEENEIKKEVLAEDNDNHEDEILEEEGAIPEYNKKKRN
KEASKQYREKRKTAIKEVFEKQRELEQKNQKLRKQLREMEQASEEMQKLF
ASHIKSKDMIKQEIVKLXNEN Run BLAST on NCBI transcript from alignment at sc0000061:826439..829107 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005982 ID=TCONS_00005982|Name=TCONS_00005982|organism=Clytia hemisphaerica|type=transcript|length=2669bp|location=Sequence derived from alignment at sc0000061:826439..829107 (Clytia hemisphaerica)
AAATAATTTCGTGATGTCATACATATTGCGGtcagtaatttatgaaaatt
tatgcggggtttgtttttgtataattATGCAATCCCATGACGACAAGTGA
TGATAAGGCAAAAAAGCGCTGCAATATCTATATATAAggaaattgggaaa
aatgaGATAGATTCATATGCAAGTCAACTATAGAAGAGTTCAGAACTAAT
GATCTTTCTCAGAACACAACATTGCAAGAAAAGTCTGAGAAGTTTCAAGA
AAAGTTTAACTAGTAAACAGAAGTCAAGtgcaaagaaaaaaaggtcATAA
CAATTCTAATTCGTGGAACTCGGAAAACAAAAGATTGTtggtaaaattat
caaaattcttggaagatATTCACTACAAGAGAGTATAAAAACGCGCTGGA
AAGGTTGCAGGAATCCAGAAGACAGTTTTTCAAAACTGGACATTGCACGG
AGATGACCCTTTGTATTCAGATGACAAGTTACAATACATCGATTGGTGAA
TCTTATGGGAATGATACACCTTTACCGAATCGTTGCCGAGCGTTCTTACT
GCAGCCTGCTAAAAAGATCAGCAGTTCAGTATGCACCGAGGTCATCGAAG
AAGGTTTTGTAGACTATGGGAAAACGGTCCAGAAGCTTGGCCAAGAAATT
CTATCTAAAGACACTCGTTCAAATTCCACTAAAATTGAAAGGGAAGGAAA
TACGAACTTTGACAAAAATGATATTGCTTACTGTACTGATATTAAACGAT
CATGCAACACGGAAGACGAACAGCAGCATCATCAGAAAGAGCTTAAAGCG
CTTTCGCCAGCCCACGATTTAAACCTATCATCAACTACACCAATACACCA
GGATATAAATCACGTAAATTCGAACAGACCTCACAGCGAGAATGAAAAAG
AAGATATTATGGTAGAGGATGATGATGACGAAAATATAGACGTCGTTGGT
GGTGTGGAAGATTGTATTTCTTGTCGATATGGACTTTACCAGCAGATGTC
AGACCACTATCCAAATGACAATGTTTTATATAGAAATCAAAGATATTTCG
AAGATAATATGAGAAATTGGAGTTCTGGTAAACGTCGACGATCTTCATGT
TCAAGTGATGATGATTCATACGGTTCTTCACTTCCAAAACGGCCCGTACC
AAGACATTCGCCGCCAGTTTCTTCACCAGTAGTTACCAGTCCTCGATTGG
AGACTAGGTCAGACATTGGTCATGATAAGGGTATGTTTACATCTGCTTTT
AATGTTTATTCGAGAGCAAAATCTGCTGTTGAAATTAAAGTTGAGGATAA
CGAGGATGTGGATGATTTATGTATTCGCTCCAGTAGTGCCGacaatgttt
tcaaaacataCCCTACTTCAACAAACTGTTCAAAAGGATTGGTTTTCTCT
AACCAAGGAATAGAGAAATATTTCCCTGAAAATGTCCAGCGTTTAAATAA
TGTGGCCGATAACTTGAACAATGAACAACAACGGTCGAAATTATCAAGCT
ATTTCATTAAATCATGCAGTAATAGTCCGGAAACTGTTAACGAGATCGAC
CAACGGAATCAAGATAATTATAGCCAAAACAGGGGACAATTCTTGTTAGA
ACATGGTCAAAAACTCTTTGAAAACCGATTGTCAAATTCTGGGAATTTGG
TTGGTCATGATGAGATAAGGGGACTTGGAACGAGTATCAAAGAGGAAAAC
GAGATTAAGAAGGAAGTGTTAGCAGAGGATAATGATAATCACGAGGACGA
GATTCTCGAAGAGGAGGGGGCAATCCCAGAATACAATAAAAAGAAGCGAA
ATAAGGAAGCTTCAAAACAGTACCGAGAAAAACGGAAAACAGCTATCAAG
gaagtcttcgaaaaacaacGAGAATTAGaacaaaagaatcaaaaacTGAG
AAAACAATTACGTGAAATGGAACAAGCAAGtgaagaaatgcaaaaattgt
TTGCCAGTCATATAAAATCTAAAGACATGATTAAACAAGAAATAGTCAAA
TTANACAACGAGAATTAGaacaaaagaatcaaaaacTGAGAAAACAATTA
CGTGAAATGGAACAAGCAAGtgaagaaatgcaaaaattgtTTGCCAGTCA
TATAAAATCTAAAGACATGATCAAACAAGAAATAGTCAAATTATTGAGTC
GATCTAATGATACGACTGATTTACAAAGTGAAATTTCTGTCATGCAAAAA
ATATTCCAACATGTGGCGAATGGGAAATCGAGCAAAGGTTGTGTTGAAAA
AGCTATTTATGAAGTTCTAGGTGAAGTCATTCATTAAAACTTGTATTATT
Aatccttttctattttttgagaaatttttgttaagaattaaaaaaaaatc
ttaatcattattttttaagaGTGCAATCATACAAAAGCTAAATTAGCAGT
TTTTTGGTAAGCAAAATTTGCATCGTTTATTATGTTCAATATTTGAGCCC
TAGAGTAGATTTTAATAATGTTGTAAAAAAAGATATTGTTCATgtaatta
taaataaaaaacattttaagggtATAGGTAACATATTTTGTTTGTAAATT
TTATCTTCATCATTTTGttgtaaataattattttgtatTATATTTAACAC
TAGAACAAAATTCTagacagaaaaaaaataaattgaaaataaattaaggT
TTAAAATAaccaataaaaa Coding sequence (CDS) from alignment at sc0000061:826439..829107 >TCONS_00005982 ID=TCONS_00005982|Name=TCONS_00005982|organism=Clytia hemisphaerica|type=CDS|length=1566bp|location=Sequence derived from alignment at sc0000061:826439..829107 (Clytia hemisphaerica)
ATGACCCTTTGTATTCAGATGACAAGTTACAATACATCGATTGGTGAATC
TTATGGGAATGATACACCTTTACCGAATCGTTGCCGAGCGTTCTTACTGC
AGCCTGCTAAAAAGATCAGCAGTTCAGTATGCACCGAGGTCATCGAAGAA
GGTTTTGTAGACTATGGGAAAACGGTCCAGAAGCTTGGCCAAGAAATTCT
ATCTAAAGACACTCGTTCAAATTCCACTAAAATTGAAAGGGAAGGAAATA
CGAACTTTGACAAAAATGATATTGCTTACTGTACTGATATTAAACGATCA
TGCAACACGGAAGACGAACAGCAGCATCATCAGAAAGAGCTTAAAGCGCT
TTCGCCAGCCCACGATTTAAACCTATCATCAACTACACCAATACACCAGG
ATATAAATCACGTAAATTCGAACAGACCTCACAGCGAGAATGAAAAAGAA
GATATTATGGTAGAGGATGATGATGACGAAAATATAGACGTCGTTGGTGG
TGTGGAAGATTGTATTTCTTGTCGATATGGACTTTACCAGCAGATGTCAG
ACCACTATCCAAATGACAATGTTTTATATAGAAATCAAAGATATTTCGAA
GATAATATGAGAAATTGGAGTTCTGGTAAACGTCGACGATCTTCATGTTC
AAGTGATGATGATTCATACGGTTCTTCACTTCCAAAACGGCCCGTACCAA
GACATTCGCCGCCAGTTTCTTCACCAGTAGTTACCAGTCCTCGATTGGAG
ACTAGGTCAGACATTGGTCATGATAAGGGTATGTTTACATCTGCTTTTAA
TGTTTATTCGAGAGCAAAATCTGCTGTTGAAATTAAAGTTGAGGATAACG
AGGATGTGGATGATTTATGTATTCGCTCCAGTAGTGCCGacaatgttttc
aaaacataCCCTACTTCAACAAACTGTTCAAAAGGATTGGTTTTCTCTAA
CCAAGGAATAGAGAAATATTTCCCTGAAAATGTCCAGCGTTTAAATAATG
TGGCCGATAACTTGAACAATGAACAACAACGGTCGAAATTATCAAGCTAT
TTCATTAAATCATGCAGTAATAGTCCGGAAACTGTTAACGAGATCGACCA
ACGGAATCAAGATAATTATAGCCAAAACAGGGGACAATTCTTGTTAGAAC
ATGGTCAAAAACTCTTTGAAAACCGATTGTCAAATTCTGGGAATTTGGTT
GGTCATGATGAGATAAGGGGACTTGGAACGAGTATCAAAGAGGAAAACGA
GATTAAGAAGGAAGTGTTAGCAGAGGATAATGATAATCACGAGGACGAGA
TTCTCGAAGAGGAGGGGGCAATCCCAGAATACAATAAAAAGAAGCGAAAT
AAGGAAGCTTCAAAACAGTACCGAGAAAAACGGAAAACAGCTATCAAGga
agtcttcgaaaaacaacGAGAATTAGaacaaaagaatcaaaaacTGAGAA
AACAATTACGTGAAATGGAACAAGCAAGtgaagaaatgcaaaaattgtTT
GCCAGTCATATAAAATCTAAAGACATGATTAAACAAGAAATAGTCAAATT
ANACAACGAGAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005982-exon-sc0000061-1491911889:826439..829107 | TCONS_00005982-exon-sc0000061-1491911889:826439..829107 | Clytia hemisphaerica | exon |
| TCONS_00005982-exon-sc0000061-1510915933:826439..829107 | TCONS_00005982-exon-sc0000061-1510915933:826439..829107 | Clytia hemisphaerica | exon |
| TCONS_00005982-exon-sc0000061-1575043694:826439..829107 | TCONS_00005982-exon-sc0000061-1575043694:826439..829107 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:826439..829107 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004827 | bZIP |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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