TCONS_00005981 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005981
Unique NameTCONS_00005981
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length415

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005981 ID=TCONS_00005981|Name=TCONS_00005981|organism=Clytia hemisphaerica|type=transcript|length=415bp
GACACAATCGAGGCCACGCCCAAGGATGACATGCCTGAGGAACTGAAAAC
GATACCTCAAGATACCACTCAACTCGAAATCGATATCATGGTTGCAATCG
AGGATATTGATGACTTGATTGACGAGAATGCAtcctttgatgacgtcact
accTCGAAGCTCGAGCAACATCGAACCAATCTTCGACGATTACGAAATAT
CCTCATGAGAAATCATCCACATTCTGACCTGCTTTCCGAGATCAAAGTCA
CCTTGGATGTAAAAATCAAATCCTatatcaaatcaaacaaaggcgTGAAC
AACAACACCAAAATCTTGCAAGACAAAATGAAGCAAGACGAAATCCaacg
aaaacaaagatcaatcgAGTTCCTCGTCAACAACATTAATCGAGATCTGA
AGGAACTTACAGAAC
Run BLAST on NCBI

protein sequence of TCONS_00005981-protein

>TCONS_00005981-protein ID=TCONS_00005981-protein|Name=TCONS_00005981-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
DTIEATPKDDMPEELKTIPQDTTQLEIDIMVAIEDIDDLIDENASFDDVT
TSKLEQHRTNLRRLRNILMRNHPHSDLLSEIKVTLDVKIKSYIKSNKGVN
NNTKILQDKMKQDEIQRKQRSIEFLVNNINRDLKELTE
Run BLAST on NCBI

transcript from alignment at sc0000061:812614..813028

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005981 ID=TCONS_00005981|Name=TCONS_00005981|organism=Clytia hemisphaerica|type=transcript|length=415bp|location=Sequence derived from alignment at sc0000061:812614..813028 (Clytia hemisphaerica)
GTTCTGTAAGTTCCTTCAGATCTCGATTAATGTTGTTGACGAGGAACTcg
attgatctttgttttcgttGGATTTCGTCTTGCTTCATTTTGTCTTGCAA
GATTTTGGTGTTGTTGTTCAcgcctttgtttgatttgatatAGGATTTGA
TTTTTACATCCAAGGTGACTTTGATCTCGGAAAGCAGGTCAGAATGTGGA
TGATTTCTCATGAGGATATTTCGTAATCGTCGAAGATTGGTTCGATGTTG
CTCGAGCTTCGAggtagtgacgtcatcaaaggaTGCATTCTCGTCAATCA
AGTCATCAATATCCTCGATTGCAACCATGATATCGATTTCGAGTTGAGTG
GTATCTTGAGGTATCGTTTTCAGTTCCTCAGGCATGTCATCCTTGGGCGT
GGCCTCGATTGTGTC

Coding sequence (CDS) from alignment at sc0000061:812614..813028

>TCONS_00005981 ID=TCONS_00005981|Name=TCONS_00005981|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at sc0000061:812614..813028 (Clytia hemisphaerica)
TTCTGTAAGTTCCTTCAGATCTCGATTAATGTTGTTGACGAGGAACTcga
ttgatctttgttttcgttGGATTTCGTCTTGCTTCATTTTGTCTTGCAAG
ATTTTGGTGTTGTTGTTCAcgcctttgtttgatttgatatAGGATTTGAT
TTTTACATCCAAGGTGACTTTGATCTCGGAAAGCAGGTCAGAATGTGGAT
GATTTCTCATGAGGATATTTCGTAATCGTCGAAGATTGGTTCGATGTTGC
TCGAGCTTCGAggtagtgacgtcatcaaaggaTGCATTCTCGTCAATCAA
GTCATCAATATCCTCGATTGCAACCATGATATCGATTTCGAGTTGAGTGG
TATCTTGAGGTATCGTTTTCAGTTCCTCAGGCATGTCATCCTTGGGCGTG
GCCTCGATTGTGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003414XLOC_003414Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005981-exon-sc0000061-1491911889:812614..813028TCONS_00005981-exon-sc0000061-1491911889:812614..813028Clytia hemisphaericaexon
TCONS_00005981-exon-sc0000061-1510915933:812614..813028TCONS_00005981-exon-sc0000061-1510915933:812614..813028Clytia hemisphaericaexon
TCONS_00005981-exon-sc0000061-1575043694:812614..813028TCONS_00005981-exon-sc0000061-1575043694:812614..813028Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005981-proteinTCONS_00005981-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:812614..813028 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.72222	1.17561	1.55999	0.763103	0.696753	0.734112	2.65702	2.07289	1.30615	1.61788	0	2.29398	0	0.11895	0.391173	0.104947	0	0.132514	0	0.383151	0.166514	0.487318	0.592399	0.179526	0.184907	0	5.19531	3.78039	0	0.194755
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005981 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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