TCONS_00005978 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005978
Unique NameTCONS_00005978
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length782

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005978 ID=TCONS_00005978|Name=TCONS_00005978|organism=Clytia hemisphaerica|type=transcript|length=782bp
TCGCAGTGAGGATTTTCTTtctaattattttcagtggggacacaAATTAG
AGTATAATGTTTCACTagagacgatattttggccagtttttccagtggga
agggttcccagtgggtctgtgagatgAAGGTACAGTAGACCCACGCTTAT
TccaacttctattattcgaatctttctgtaattcgaactaattctaaCTT
CCCGTAAAGGAGAAACTCTcttaaaaatactttctataattctaaaaata
gttACAATAAACGAGAGCCATTCGCCAAGATTTTTTATCTAGACAATCCC
AAGGCTAATCACGCCGTcaatagaataaaaaaagttataggCATGGGTAC
GAGGATGTTGATATATTGTACACCCCTGAATAATTActtcattgggctct
tccagaaaaaaaaccgttcATAGGCGGGGGTGAcggatatattgtccagg
gatatcgaaaaaatcctgaaaaattgctatgtccatggggtgaattTGCA
ATTTCCAGGGGTAAATTTTAGTGTCCAGGGGGGTCGATTTGATGCTTATC
CAGGGGTAAAACatgtgtccagggggtgaaaaatttaaacgtCCTCCACC
GCCTTGAACGAATTTTTTCTAGAAGAGCCCatttaagaaaaagaaatgtT
CTATACCAATACCACTGGTTACATGTATTGATGCAATCCTCAgtttgagt
tttagaaaatgaatATCTTGAATATTTGAAGTTATGAAGTTATTAGCTCT
GCAGTACAAGTAGTATCAATCACTCTAATTNN
Run BLAST on NCBI

transcript from alignment at sc0000061:767626..768407

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005978 ID=TCONS_00005978|Name=TCONS_00005978|organism=Clytia hemisphaerica|type=transcript|length=782bp|location=Sequence derived from alignment at sc0000061:767626..768407 (Clytia hemisphaerica)
NNAATTAGAGTGATTGATACTACTTGTACTGCAGAGCTAATAACTTCATA
ACTTCAAATATTCAAGATattcattttctaaaactcaaacTGAGGATTGC
ATCAATACATGTAACCAGTGGTATTGGTATAGAacatttctttttcttaa
atGGGCTCTTCTAGAAAAAATTCGTTCAAGGCGGTGGAGGacgtttaaat
ttttcaccccctggacacatGTTTTACCCCTGGATAAGCATCAAATCGAC
CCCCCTGGACACTAAAATTTACCCCTGGAAATTGCAaattcaccccatgg
acatagcaatttttcaggattttttcgatatccctggacaatatatccgT
CACCCCCGCCTATgaacggttttttttctggaagagcccaatgaagTAAT
TATTCAGGGGTGTACAATATATCAACATCCTCGTACCCATGcctataact
ttttttattctattgACGGCGTGATTAGCCTTGGGATTGTCTAGATAAAA
AATCTTGGCGAATGGCTCTCGTTTATTGTaactatttttagaattataga
aagtatttttaagAGAGTTTCTCCTTTACGGGAAGttagaattagttcga
attacagaaagattcgaataatagaagttggAATAAGCGTGGGTCTACTG
TACCTTcatctcacagacccactgggaacccttcccactggaaaaactgg
ccaaaatatcgtctctAGTGAAACATTATACTCTAATTtgtgtccccact
gaaaataattagaAAGAAAATCCTCACTGCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003411XLOC_003411Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005978-exon-sc0000061-1491911889:767626..768407TCONS_00005978-exon-sc0000061-1491911889:767626..768407Clytia hemisphaericaexon
TCONS_00005978-exon-sc0000061-1510915933:767626..768407TCONS_00005978-exon-sc0000061-1510915933:767626..768407Clytia hemisphaericaexon
TCONS_00005978-exon-sc0000061-1575043694:767626..768407TCONS_00005978-exon-sc0000061-1575043694:767626..768407Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:767626..768407 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.252557	0	0.0834969	0.329902	0.31841	0.372615	0.17071	0.343674	0.330188	0.21041	0.207769	0.0436049	0.140956	0.233067	0.2324	0.383849	0.0663587	0	0.181951	0.443287	2.62955	1.71769	0.332381	0.830598	0.234176	0.0984738	0.0799512	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005978 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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