TCONS_00005975 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005975
Unique NameTCONS_00005975
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length712

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005975 ID=TCONS_00005975|Name=TCONS_00005975|organism=Clytia hemisphaerica|type=transcript|length=712bp
ccttactcgaacgcaatcgaatattacccaggaatcgaccgttcgattga
gattcgattatgtttgacaatcgaatcgcaatcattcgatcgcgttcgat
tacgttcgattagttcgattgcgatttttgttcgaagttgttcgattgac
accgtctggattaTACTACTAAATCAACGATATAAGAACatgaaaagtat
tgaaaattgTGATAGAGTAGTTGATTTCTCTAATCCCAATTTACTGggag
tttttttgttatttttgctgTGGAATTTGAATGTTTGATGCAGAACTGAT
TTCTTGTACTTGGTTGGCTGGTCACTTTGATTTTACATCATGGATACGAT
TTTATTCAGAGGAAAACTCAACTGGATTTCGATTGAGCATACTTCGTTAC
AGCTCCTGTAAAAATTTGAGACAGATTGCTCCATTTTTGAAGGATTTATG
ACCCAAAATGATGCACCGCTGGAGACGACCAATGTTTGTGATTGTACCGG
CTATTACTTTAATTTTACATTTCTGACACAGACTTATGTAGAACAAACTT
CTTTTGAAACTTGACTCAGCATACTTCAGTACAGCTCCTGTATAAATTTG
GGAAacattggtcaatttttcatgaagTATTAGGCCAAACTGGACTTCTT
CAACAATCTCAACCGTGCTTTTGACGGTCATCACCTTTATTTTACATCAT
GGATACAGATTT
Run BLAST on NCBI

transcript from alignment at sc0000061:697259..697970

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005975 ID=TCONS_00005975|Name=TCONS_00005975|organism=Clytia hemisphaerica|type=transcript|length=712bp|location=Sequence derived from alignment at sc0000061:697259..697970 (Clytia hemisphaerica)
AAATCTGTATCCATGATGTAAAATAAAGGTGATGACCGTCAAAAGCACGG
TTGAGATTGTTGAAGAAGTCCAGTTTGGCCTAATActtcatgaaaaattg
accaatgtTTCCCAAATTTATACAGGAGCTGTACTGAAGTATGCTGAGTC
AAGTTTCAAAAGAAGTTTGTTCTACATAAGTCTGTGTCAGAAATGTAAAA
TTAAAGTAATAGCCGGTACAATCACAAACATTGGTCGTCTCCAGCGGTGC
ATCATTTTGGGTCATAAATCCTTCAAAAATGGAGCAATCTGTCTCAAATT
TTTACAGGAGCTGTAACGAAGTATGCTCAATCGAAATCCAGTTGAGTTTT
CCTCTGAATAAAATCGTATCCATGATGTAAAATCAAAGTGACCAGCCAAC
CAAGTACAAGAAATCAGTTCTGCATCAAACATTCAAATTCCAcagcaaaa
ataacaaaaaaactccCAGTAAATTGGGATTAGAGAAATCAACTACTCTA
TCAcaattttcaatacttttcatGTTCTTATATCGTTGATTTAGTAGTAt
aatccagacggtgtcaatcgaacaacttcgaacaaaaatcgcaatcgaac
taatcgaacgtaatcgaacgcgatcgaatgattgcgattcgattgtcaaa
cataatcgaatctcaatcgaacggtcgattcctgggtaatattcgattgc
gttcgagtaagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003408XLOC_003408Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005975-exon-sc0000061-1491911889:697259..697970TCONS_00005975-exon-sc0000061-1491911889:697259..697970Clytia hemisphaericaexon
TCONS_00005975-exon-sc0000061-1510915933:697259..697970TCONS_00005975-exon-sc0000061-1510915933:697259..697970Clytia hemisphaericaexon
TCONS_00005975-exon-sc0000061-1575043694:697259..697970TCONS_00005975-exon-sc0000061-1575043694:697259..697970Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:697259..697970 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.34833	2.08253	2.28662	2.95759	42.7907	22.3402	10.933	11.8303	2.1427	5.64221	2.67311	3.42174	0.791855	0.486854	1.99322	0.97755	0.600988	0.918816	0.941099	0.686908	1.01574	0.926814	0.88988	1.57118	1.78036	1.91721	0.838446	0.879729	0.691725	0.960089
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005975 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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