TCONS_00005972 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005972
Unique NameTCONS_00005972
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length403

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005972 ID=TCONS_00005972|Name=TCONS_00005972|organism=Clytia hemisphaerica|type=transcript|length=403bp
CATTAACTACTCTTTCGTCCAATCAAATTACGTTTTAGAAATATTAGCCA
ATCAGAGACATTCGAACGTAAGTAAAAAACCAACCAGAATAAAGTAAACA
ATAAAACAATGCGTATGTTTTGTGTTTGAGTTTAACGAGCCATTTTAAAC
ACAGTTCGTTTGAGACtgtttggaaaaatgtttccagAATACAAAATACG
GTTCATTAACTCTATCAGAGCTTCCTATTACCAATATTAccagtggagtc
tctataacttgaACATACACatggaacacaaatttgttcgagttaaggaa
atttcgagatatagagtaagtaaggtttataaggcattgttaactggagg
aactagaaaacttgtttgagttaaggagacattcaagttattttcgattt
caa
Run BLAST on NCBI

transcript from alignment at sc0000061:532095..532497

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005972 ID=TCONS_00005972|Name=TCONS_00005972|organism=Clytia hemisphaerica|type=transcript|length=403bp|location=Sequence derived from alignment at sc0000061:532095..532497 (Clytia hemisphaerica)
ttgaaatcgaaaataacttgaatgtctccttaactcaaacaagttttcta
gttcctccagttaacaatgccttataaaccttacttactctatatctcga
aatttccttaactcgaacaaatttgtgttccatGTGTATGTtcaagttat
agagactccactggTAATATTGGTAATAGGAAGCTCTGATAGAGTTAATG
AACCGTATTTTGTATTctggaaacatttttccaaacaGTCTCAAACGAAC
TGTGTTTAAAATGGCTCGTTAAACTCAAACACAAAACATACGCATTGTTT
TATTGTTTACTTTATTCTGGTTGGTTTTTTACTTACGTTCGAATGTCTCT
GATTGGCTAATATTTCTAAAACGTAATTTGATTGGACGAAAGAGTAGTTA
ATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003405XLOC_003405Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005972-exon-sc0000061-1491911889:532095..532497TCONS_00005972-exon-sc0000061-1491911889:532095..532497Clytia hemisphaericaexon
TCONS_00005972-exon-sc0000061-1510915933:532095..532497TCONS_00005972-exon-sc0000061-1510915933:532095..532497Clytia hemisphaericaexon
TCONS_00005972-exon-sc0000061-1575043694:532095..532497TCONS_00005972-exon-sc0000061-1575043694:532095..532497Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:532095..532497 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.364847	0.81399	0	0	0	0	0	0	0.185277	0	0	0.598907	0.207685	0.445755	0.137284	0.422134	0	0.406851	0.884069	0.258731	0.209681	0.571891	0.196345	1.08228	0.250758	0	0.608931	0.282059
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005972 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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