TCONS_00005967 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005967
Unique NameTCONS_00005967
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length477

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005967 ID=TCONS_00005967|Name=TCONS_00005967|organism=Clytia hemisphaerica|type=transcript|length=477bp
atcagattttccaaaaaatttgaaatcaggCATCCATGCCTTGGCACGAT
GAAAATatgaatttccattttcaatgtttttatctttCATTGTGTCACTG
TCCAGAATGATATCACCATAATTCCCTTCTAAGTTCTTGTACAAACTTCG
CGCCCCAAAAACGGCCGATATTGCAGCCAAGAAACAGATTTGGTTCAAAA
GTACCAGCTTCATAATGTTAATGTGATATCAACAAATGGATTTTATGTTA
TTTACAGTATGTTTCTTGTCGTAGAAATCCTTGTAGTAAGTGTTCTGACA
CAAAATGAAGATCAATAAACCGCCAGCGGtattctttttttgttattatc
tattgaatgaaaaagatgtTTCTTCTTTGAGGCGTTCTTTCTTTGGGAAA
TTTGAGTGAAAAAATTTCACGTCCGTGCTTTACATCACATACCAGAGTGT
TACTGTCTAACGAACGGTATATAGAGG
Run BLAST on NCBI

transcript from alignment at sc0000061:387155..387631

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005967 ID=TCONS_00005967|Name=TCONS_00005967|organism=Clytia hemisphaerica|type=transcript|length=477bp|location=Sequence derived from alignment at sc0000061:387155..387631 (Clytia hemisphaerica)
CCTCTATATACCGTTCGTTAGACAGTAACACTCTGGTATGTGATGTAAAG
CACGGACGTGAAATTTTTTCACTCAAATTTCCCAAAGAAAGAACGCCTCA
AAGAAGAAacatctttttcattcaatagataataacaaaaaaagaataCC
GCTGGCGGTTTATTGATCTTCATTTTGTGTCAGAACACTTACTACAAGGA
TTTCTACGACAAGAAACATACTGTAAATAACATAAAATCCATTTGTTGAT
ATCACATTAACATTATGAAGCTGGTACTTTTGAACCAAATCTGTTTCTTG
GCTGCAATATCGGCCGTTTTTGGGGCGCGAAGTTTGTACAAGAACTTAGA
AGGGAATTATGGTGATATCATTCTGGACAGTGACACAATGaaagataaaa
acattgaaaatggaaattcatATTTTCATCGTGCCAAGGCATGGATGcct
gatttcaaattttttggaaaatctgat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003400XLOC_003400Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005967-exon-sc0000061-1491911889:387155..387631TCONS_00005967-exon-sc0000061-1491911889:387155..387631Clytia hemisphaericaexon
TCONS_00005967-exon-sc0000061-1510915933:387155..387631TCONS_00005967-exon-sc0000061-1510915933:387155..387631Clytia hemisphaericaexon
TCONS_00005967-exon-sc0000061-1575043694:387155..387631TCONS_00005967-exon-sc0000061-1575043694:387155..387631Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:387155..387631 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.72094	0.903637	0.149887	0.146641	0	0.28214	0.510585	0.796672	0.334661	0	0.402355	0.176328	2.99341	0.731456	7.8928	2.82339	1.88816	4.68547	0	0	0.255984	0	1.21427	1.24194	0.42639	1.01478	0.726075	0.387443	0.587724	0.898197
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005967 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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