TCONS_00005964 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005964
Unique NameTCONS_00005964
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length299

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005964 ID=TCONS_00005964|Name=TCONS_00005964|organism=Clytia hemisphaerica|type=transcript|length=299bp
TAACTATTTCAATACGTCAAGGTATAAAAACTTAACGGAAAAAGCGGAAA
CCTAAAATAAATTTCGAGAATAATTCAGGAGGGGACAGGGATAAAGTAGT
TAAACTAATATTTAAAGCAAAATTGAAATCTACACGcattttattataag
aatacactttataagaatgtccatgatgaaaatggccaaaaaataaagaa
tctcGTAAGAATATTGCCATCATGGAATTAGGCAactgaagctaagaatg
tcatttctATAGCCTTTTACCTGTATATTGCCATTTACTTCCGCAAGCA
Run BLAST on NCBI

transcript from alignment at sc0000061:326386..326684

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005964 ID=TCONS_00005964|Name=TCONS_00005964|organism=Clytia hemisphaerica|type=transcript|length=299bp|location=Sequence derived from alignment at sc0000061:326386..326684 (Clytia hemisphaerica)
TGCTTGCGGAAGTAAATGGCAATATACAGGTAAAAGGCTATagaaatgac
attcttagcttcagtTGCCTAATTCCATGATGGCAATATTCTTACgagat
tctttattttttggccattttcatcatggacattcttataaagtgtattc
ttataataaaatgCGTGTAGATTTCAATTTTGCTTTAAATATTAGTTTAA
CTACTTTATCCCTGTCCCCTCCTGAATTATTCTCGAAATTTATTTTAGGT
TTCCGCTTTTTCCGTTAAGTTTTTATACCTTGACGTATTGAAATAGTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003397XLOC_003397Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005964-exon-sc0000061-1491911889:326386..326684TCONS_00005964-exon-sc0000061-1491911889:326386..326684Clytia hemisphaericaexon
TCONS_00005964-exon-sc0000061-1510915933:326386..326684TCONS_00005964-exon-sc0000061-1510915933:326386..326684Clytia hemisphaericaexon
TCONS_00005964-exon-sc0000061-1575043694:326386..326684TCONS_00005964-exon-sc0000061-1575043694:326386..326684Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:326386..326684 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.383808	0.445637	0.435987	0	0.419423	0	0.47405	0.332465	0.411297	0	1.83877	0	0	0.223916	0.239994	0	0.91	0	0	0	0	0.451277	0	0.422575	0.377138	1.07937	0.575965	0.530533	2.2254
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005964 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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