TCONS_00005958 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005958
Unique NameTCONS_00005958
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length349

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005958 ID=TCONS_00005958|Name=TCONS_00005958|organism=Clytia hemisphaerica|type=transcript|length=349bp
NCATGATTCCTCAAAACGATCTATCAGACACGGAGTCCCCCAGGGCTCTG
TCCTAGGGCCTCTACTTTTTCTAATATATATAAATGACATTCCTGAAGCC
ATTCGGAATAGCGAAACAAACCTCTTTGCTGACGACACCTGTCTTCTCTC
TTCCGATTCGAATCTAAATTCACTTGAGGCGAAAGTGAATTCTGACTTAA
TCAGACTCTCCTCTTGGCTTCGTGCCAACAAAATCTCTCTTAATGCTACA
AAAACTGAGGTTATCCTGTTTAGAAGTAAAAATAAACCTGTACCATATAC
AATGAATCTCAATCTTGATGGGCATGTCTTGAAATTTTCGAAATGTGTC
Run BLAST on NCBI

protein sequence of TCONS_00005958-protein

>TCONS_00005958-protein ID=TCONS_00005958-protein|Name=TCONS_00005958-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
HDSSKRSIRHGVPQGSVLGPLLFLIYINDIPEAIRNSETNLFADDTCLLS
SDSNLNSLEAKVNSDLIRLSSWLRANKISLNATKTEVILFRSKNKPVPYT
MNLNLDGHVLKFSKCV
Run BLAST on NCBI

transcript from alignment at sc0000061:242830..243178

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005958 ID=TCONS_00005958|Name=TCONS_00005958|organism=Clytia hemisphaerica|type=transcript|length=349bp|location=Sequence derived from alignment at sc0000061:242830..243178 (Clytia hemisphaerica)
GACACATTTCGAAAATTTCAAGACATGCCCATCAAGATTGAGATTCATTG
TATATGGTACAGGTTTATTTTTACTTCTAAACAGGATAACCTCAGTTTTT
GTAGCATTAAGAGAGATTTTGTTGGCACGAAGCCAAGAGGAGAGTCTGAT
TAAGTCAGAATTCACTTTCGCCTCAAGTGAATTTAGATTCGAATCGGAAG
AGAGAAGACAGGTGTCGTCAGCAAAGAGGTTTGTTTCGCTATTCCGAATG
GCTTCAGGAATGTCATTTATATATATTAGAAAAAGTAGAGGCCCTAGGAC
AGAGCCCTGGGGGACTCCGTGTCTGATAGATCGTTTTGAGGAATCATGN

Coding sequence (CDS) from alignment at sc0000061:242830..243178

>TCONS_00005958 ID=TCONS_00005958|Name=TCONS_00005958|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at sc0000061:242830..243178 (Clytia hemisphaerica)
GACACATTTCGAAAATTTCAAGACATGCCCATCAAGATTGAGATTCATTG
TATATGGTACAGGTTTATTTTTACTTCTAAACAGGATAACCTCAGTTTTT
GTAGCATTAAGAGAGATTTTGTTGGCACGAAGCCAAGAGGAGAGTCTGAT
TAAGTCAGAATTCACTTTCGCCTCAAGTGAATTTAGATTCGAATCGGAAG
AGAGAAGACAGGTGTCGTCAGCAAAGAGGTTTGTTTCGCTATTCCGAATG
GCTTCAGGAATGTCATTTATATATATTAGAAAAAGTAGAGGCCCTAGGAC
AGAGCCCTGGGGGACTCCGTGTCTGATAGATCGTTTTGAGGAATCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003391XLOC_003391Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005958-exon-sc0000061-1491911889:242830..243178TCONS_00005958-exon-sc0000061-1491911889:242830..243178Clytia hemisphaericaexon
TCONS_00005958-exon-sc0000061-1510915933:242830..243178TCONS_00005958-exon-sc0000061-1510915933:242830..243178Clytia hemisphaericaexon
TCONS_00005958-exon-sc0000061-1575043694:242830..243178TCONS_00005958-exon-sc0000061-1575043694:242830..243178Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005958-proteinTCONS_00005958-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:242830..243178 .
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.760236	1.72982	3.07285	0.561425	1.36696	1.73758	2.28795	1.83007	0.854182	1.05804	0.25674	0.78494	0.948736	1.40021	0.719479	0.772111	0.570706	1.16991	0	0.281889	2.20512	1.31016	0.871672	1.05663	1.70423	2.1854	1.04243	0.370838	0.562535	0.859701
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005958 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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