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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005954 ID=TCONS_00005954|Name=TCONS_00005954|organism=Clytia hemisphaerica|type=transcript|length=1208bp
ccaattcacgtattcacgacagaaaaaagggtcattcacgcgtcacgcca
gcccctgggggagcccccTTTCTGCTCTTCTAAACTGTCTCAAGTATCAA
GTTATTGCTTTAAATCTACTTTTTTTCACTCTTTGGAAAAAGCAGATCCT
TCAATATGGCTGTCAGAAAGTGACGACAACGTTTTAACCTGTTTTAATAT
TGTTCTTGGTGATGtaatcaaagtttttgaaaatcaatctTGCCCACATT
TTTGGATACCCAACAATGATCTTTTCAAAGAAGTTCCGAAAGATCTTATT
GAAAAATCCTTATCCATATTAAAGGACGTTCAAAAAAGACCAAACTTATA
CATTGGCTCTTTTCCAGTCTCTTACTTGGCacgatatccaaaaatgaaCG
ACGAAAGCAATGTTGAACATTTAGATGAGGTGATTAGAAGAGTGTAAAAC
TGCAGAACAATTATCGAAACAAAGGAGCTTTGTTGAATGTTAAACCATGA
AATTTCATCCAATTgatgtttttgcgaccctttgagagactcaTTTTTTA
ATCTTTAGCTCAAAATTACACCAGATTTTACTACCCTTTAAGGGAgtcga
ttttttatattttataatttttggaaCCCTTTCAGAGAATCAATTGTTAA
TTTACCggtttttgagagactttcgaggttTTAAAAAGGGAAGCCTTTGA
AGATACCCGAAGGTTTTGGCATAAGTTTCcgtaatttttctaaaataagg
TTCAAATTTTGCAAGGGTTTAGAATAAATGCCTTTCATTGGAAATTGATA
CCTTTTTGCCAACGATACATTTTGTTAGTCGTGTGCTTGGCATCCCCCCC
AAACATTATCGGTTCAAAGGAGCTTAGGCGAGACcccaatacaccgttta
ggagtctcgctatctccACCATGTTCCACCgtaaaaacggtaggtaaaaa
tgcgcactttagtactgttgaaggttagaggaatgtaaacattgtcaatt
tttttctttcctttaaagagaatgatttagatatttgaacatgatatcaa
tgataattttatgaatctctcctaaaaatttcacaaaaattcatcaagag
gaaaagaagttatgattaaaaggagttctttacctaccatttctctgcta
gGTTTCCTTACGAGAACCGGaattttacctaccgtttttttacgggaAAG
Agcggtcg Run BLAST on NCBI protein sequence of TCONS_00005954-protein >TCONS_00005954-protein ID=TCONS_00005954-protein|Name=TCONS_00005954-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
PIHVFTTEKRVIHASRQPLGEPPFCSSKLSQVSSYCFKSTFFHSLEKADP
SIWLSESDDNVLTCFNIVLGDVIKVFENQSCPHFWIPNNDLFKEVPKDLI
EKSLSILKDVQKRPNLYIGSFPVSYLARYPKMNDESNVEHLDEVIRRV Run BLAST on NCBI transcript from alignment at sc0000061:94069..95276 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005954 ID=TCONS_00005954|Name=TCONS_00005954|organism=Clytia hemisphaerica|type=transcript|length=1208bp|location=Sequence derived from alignment at sc0000061:94069..95276 (Clytia hemisphaerica)
cgaccgcTCTTtcccgtaaaaaaacggtaggtaaaattCCGGTTCTCGTA
AGGAAACctagcagagaaatggtaggtaaagaactccttttaatcataac
ttcttttcctcttgatgaatttttgtgaaatttttaggagagattcataa
aattatcattgatatcatgttcaaatatctaaatcattctctttaaagga
aagaaaaaaattgacaatgtttacattcctctaaccttcaacagtactaa
agtgcgcatttttacctaccgtttttacGGTGGAACATGGTggagatagc
gagactcctaaacggtgtattgggGTCTCGCCTAAGCTCCTTTGAACCGA
TAATGTTTGGGGGGGATGCCAAGCACACGACTAACAAAATGTATCGTTGG
CAAAAAGGTATCAATTTCCAATGAAAGGCATTTATTCTAAACCCTTGCAA
AATTTGAAccttattttagaaaaattacgGAAACTTATGCCAAAACCTTC
GGGTATCTTCAAAGGCTTCCCTTTTTAAaacctcgaaagtctctcaaaaa
ccGGTAAATTAACAATTGATTCTCTGAAAGGGttccaaaaattataaaat
ataaaaaatcgacTCCCTTAAAGGGTAGTAAAATCTGGTGTAATTTTGAG
CTAAAGATTAAAAAAtgagtctctcaaagggtcgcaaaaacatcAATTGG
ATGAAATTTCATGGTTTAACATTCAACAAAGCTCCTTTGTTTCGATAATT
GTTCTGCAGTTTTACACTCTTCTAATCACCTCATCTAAATGTTCAACATT
GCTTTCGTCGttcatttttggatatcgtGCCAAGTAAGAGACTGGAAAAG
AGCCAATGTATAAGTTTGGTCTTTTTTGAACGTCCTTTAATATGGATAAG
GATTTTTCAATAAGATCTTTCGGAACTTCTTTGAAAAGATCATTGTTGGG
TATCCAAAAATGTGGGCAagattgattttcaaaaactttgattaCATCAC
CAAGAACAATATTAAAACAGGTTAAAACGTTGTCGTCACTTTCTGACAGC
CATATTGAAGGATCTGCTTTTTCCAAAGAGTGAAAAAAAGTAGATTTAAA
GCAATAACTTGATACTTGAGACAGTTTAGAAGAGCAGAAAgggggctccc
ccaggggctggcgtgacgcgtgaatgacccttttttctgtcgtgaatacg
tgaattgg Coding sequence (CDS) from alignment at sc0000061:94069..95276 >TCONS_00005954 ID=TCONS_00005954|Name=TCONS_00005954|organism=Clytia hemisphaerica|type=CDS|length=447bp|location=Sequence derived from alignment at sc0000061:94069..95276 (Clytia hemisphaerica)
TTACACTCTTCTAATCACCTCATCTAAATGTTCAACATTGCTTTCGTCGt
tcatttttggatatcgtGCCAAGTAAGAGACTGGAAAAGAGCCAATGTAT
AAGTTTGGTCTTTTTTGAACGTCCTTTAATATGGATAAGGATTTTTCAAT
AAGATCTTTCGGAACTTCTTTGAAAAGATCATTGTTGGGTATCCAAAAAT
GTGGGCAagattgattttcaaaaactttgattaCATCACCAAGAACAATA
TTAAAACAGGTTAAAACGTTGTCGTCACTTTCTGACAGCCATATTGAAGG
ATCTGCTTTTTCCAAAGAGTGAAAAAAAGTAGATTTAAAGCAATAACTTG
ATACTTGAGACAGTTTAGAAGAGCAGAAAgggggctcccccaggggctgg
cgtgacgcgtgaatgacccttttttctgtcgtgaatacgtgaattgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005954-exon-sc0000061-1491911889:94069..95276 | TCONS_00005954-exon-sc0000061-1491911889:94069..95276 | Clytia hemisphaerica | exon |
| TCONS_00005954-exon-sc0000061-1510915933:94069..95276 | TCONS_00005954-exon-sc0000061-1510915933:94069..95276 | Clytia hemisphaerica | exon |
| TCONS_00005954-exon-sc0000061-1575043694:94069..95276 | TCONS_00005954-exon-sc0000061-1575043694:94069..95276 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:94069..95276 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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