TCONS_00005953 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005953
Unique NameTCONS_00005953
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length504

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005953 ID=TCONS_00005953|Name=TCONS_00005953|organism=Clytia hemisphaerica|type=transcript|length=504bp
GGCTAATCAAATAACATTGGTataaaatgtcacaaaaacctCAAAAACTT
GCCTTTTTTAATGAACATGTCCAGCAAACTACATTGGTTGCCAAACAGAA
CGGAACAAATCGCATACATAAAACATCCTACACATATTTCCTAGGTATAA
TTCGTGTGTTCTTTTTCTCAACCAACATCTCTCCATTCATTGAAACTTTC
AAGTGTTCCTTGATTCGAAAATGTCTGTCATCTCCTTTAATTTCCTCATA
AGCTTCAATGAAGGTTTTCATTTTCTCATTATTCCCGATATCGAAATTGG
ATTCAATAGTATTGATACTATCCATGCTGGCATATGTTACTAACTCATCT
GTGTAATATTTTTCTTCTGTTCTACTGTGACATTCGTAGCCAAGATGGGG
GAATCTTGTCATGCCTTCATCAGAGGTGGTTTTAAACAGATAAGAGTTAT
GATCAACTTTTTCTGAAGACATCTGAAGCTTATGCCCACCTGTTGTTTCA
TAAT
Run BLAST on NCBI

protein sequence of TCONS_00005953-protein

>TCONS_00005953-protein ID=TCONS_00005953-protein|Name=TCONS_00005953-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
YETTGGHKLQMSSEKVDHNSYLFKTTSDEGMTRFPHLGYECHSRTEEKYY
TDELVTYASMDSINTIESNFDIGNNEKMKTFIEAYEEIKGDDRHFRIKEH
LKVSMNGEMLVEKKNTRIIPRKYV
Run BLAST on NCBI

transcript from alignment at sc0000061:54604..55107

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005953 ID=TCONS_00005953|Name=TCONS_00005953|organism=Clytia hemisphaerica|type=transcript|length=504bp|location=Sequence derived from alignment at sc0000061:54604..55107 (Clytia hemisphaerica)
ATTATGAAACAACAGGTGGGCATAAGCTTCAGATGTCTTCAGAAAAAGTT
GATCATAACTCTTATCTGTTTAAAACCACCTCTGATGAAGGCATGACAAG
ATTCCCCCATCTTGGCTACGAATGTCACAGTAGAACAGAAGAAAAATATT
ACACAGATGAGTTAGTAACATATGCCAGCATGGATAGTATCAATACTATT
GAATCCAATTTCGATATCGGGAATAATGAGAAAATGAAAACCTTCATTGA
AGCTTATGAGGAAATTAAAGGAGATGACAGACATTTTCGAATCAAGGAAC
ACTTGAAAGTTTCAATGAATGGAGAGATGTTGGTTGAGAAAAAGAACACA
CGAATTATACCTAGGAAATATGTGTAGGATGTTTTATGTATGCGATTTGT
TCCGTTCTGTTTGGCAACCAATGTAGTTTGCTGGACATGTTCATTAAAAA
AGGCAAGTTTTTGaggtttttgtgacattttatACCAATGTTATTTGATT
AGCC

Coding sequence (CDS) from alignment at sc0000061:54604..55107

>TCONS_00005953 ID=TCONS_00005953|Name=TCONS_00005953|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at sc0000061:54604..55107 (Clytia hemisphaerica)
TATGAAACAACAGGTGGGCATAAGCTTCAGATGTCTTCAGAAAAAGTTGA
TCATAACTCTTATCTGTTTAAAACCACCTCTGATGAAGGCATGACAAGAT
TCCCCCATCTTGGCTACGAATGTCACAGTAGAACAGAAGAAAAATATTAC
ACAGATGAGTTAGTAACATATGCCAGCATGGATAGTATCAATACTATTGA
ATCCAATTTCGATATCGGGAATAATGAGAAAATGAAAACCTTCATTGAAG
CTTATGAGGAAATTAAAGGAGATGACAGACATTTTCGAATCAAGGAACAC
TTGAAAGTTTCAATGAATGGAGAGATGTTGGTTGAGAAAAAGAACACACG
AATTATACCTAGGAAATATGTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003386XLOC_003386Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005953-proteinTCONS_00005953-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005953-exon-sc0000061-1491911889:54604..55107TCONS_00005953-exon-sc0000061-1491911889:54604..55107Clytia hemisphaericaexon
TCONS_00005953-exon-sc0000061-1510915933:54604..55107TCONS_00005953-exon-sc0000061-1510915933:54604..55107Clytia hemisphaericaexon
TCONS_00005953-exon-sc0000061-1575043694:54604..55107TCONS_00005953-exon-sc0000061-1575043694:54604..55107Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:54604..55107 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.52553	1.40731	1.22552	3.33949	18.8131	12.8158	12.3694	16.3569	12.1613	9.0382	13.0372	7.20854	11.7576	8.80475	8.26304	7.98809	7.31279	8.79087	3.06823	4.2809	9.99987	9.35816	8.82508	9.02618	19.6265	25.8133	6.2664	4.57577	5.20584	6.25592
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005953 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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