|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005952 ID=TCONS_00005952|Name=TCONS_00005952|organism=Clytia hemisphaerica|type=transcript|length=1192bp
CCATACGATCCTAACAACTTTAGACCAATTTCGCTCCTCTCTAATATtga
taaagtttttgaaaaattaattaaattcagagttgtaaattttcttaaca
ttaaTAACAGCATCTtcaaaaaacaatttggatTTCGTAATAAACACTCT
ACTTCTCACGCATTAATAAATCTAACAGAAAAAATTCGGTCAAATATTGA
CAAAGGGTTGTATTCTTGCGGGGTATTCATTGATCTTCAAAAAGCTTTCG
ATACAGTAGATCATGAAATTCTTCTATCAAAACTTCATCACTATGGCATA
CGTGGCGTTGCGAAACTCTGGTTTCGATCTTACCTGACTGAGAGGAAACA
ATATGTTTCAATTTCTGGGCATGATTCCTCAAAACGATCTATCAGACACG
GAGTCCTCCAGGGCTCTGTCCTAGGGCCTCTACTTTTTCTAACATATATA
AATGACATTCCTAAAGCCATTCTGAATAGCAAAACAAACCTCTTTGCTGA
CGACACCTGTCTTCTCTCTTCCGATTCGAATCTAAATTCACTTGAGACGA
AAGTGAATTCTGACTTAATCAGACTCTCCTCTTGGTTTCGTGCCAACAAA
ATCTCTCTTAATACTACAAAAAGTGAGGTTATCCTGTTTAGAAGTAAAAA
TAAACCTGTACCATATACAATGAATCTCACTCTTGATGGGCATgtcttga
aatttttgaaatgtgTCAAATATCTTGGTCTTTTTCTCGATGAATGTCTA
GCGTGGAATTTCCATTTTGATCATTTATCCGCAAAACTTAGAAGGTCAAA
TGGCATTTTATCCAAACTGCGTCACTTTGTTCCACAGACCATTCTTAAAA
CTTTATACTATGCTATTTTTCACTCACATTTGTCATACGCAATAATCGTA
TGGGGGCAAAGTCTCACTCAAAACTTTCATTAACCTGGATATTCCAACTT
TGCCACATACTGTAACAAAGTTCAATATCCGACTCGTACATCAAACTCTC
ACTAATCTTTCTCCTGAAGCTGTTACGAACATTTTAAACTTCAAAACTCT
GTCTCATGATTATCTTACTAgaaataacgaactgaaacttCTGGAGCGCC
CAAAAGCCAAAACAATAAACTATGGATTGAAATCGATTAAGTATCAATCT
CTTTTAAACTGGAACCAGCTAATATAACATACTAAAATCGAT Run BLAST on NCBI protein sequence of TCONS_00005952-protein >TCONS_00005952-protein ID=TCONS_00005952-protein|Name=TCONS_00005952-protein|organism=Clytia hemisphaerica|type=polypeptide|length=310bp
PYDPNNFRPISLLSNIDKVFEKLIKFRVVNFLNINNSIFKKQFGFRNKHS
TSHALINLTEKIRSNIDKGLYSCGVFIDLQKAFDTVDHEILLSKLHHYGI
RGVAKLWFRSYLTERKQYVSISGHDSSKRSIRHGVLQGSVLGPLLFLTYI
NDIPKAILNSKTNLFADDTCLLSSDSNLNSLETKVNSDLIRLSSWFRANK
ISLNTTKSEVILFRSKNKPVPYTMNLTLDGHVLKFLKCVKYLGLFLDECL
AWNFHFDHLSAKLRRSNGILSKLRHFVPQTILKTLYYAIFHSHLSYAIIV
WGQSLTQNFH Run BLAST on NCBI transcript from alignment at sc0000061:6779..7970 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005952 ID=TCONS_00005952|Name=TCONS_00005952|organism=Clytia hemisphaerica|type=transcript|length=1192bp|location=Sequence derived from alignment at sc0000061:6779..7970 (Clytia hemisphaerica)
ATCGATTTTAGTATGTTATATTAGCTGGTTCCAGTTTAAAAGAGATTGAT
ACTTAATCGATTTCAATCCATAGTTTATTGTTTTGGCTTTTGGGCGCTCC
AGaagtttcagttcgttatttcTAGTAAGATAATCATGAGACAGAGTTTT
GAAGTTTAAAATGTTCGTAACAGCTTCAGGAGAAAGATTAGTGAGAGTTT
GATGTACGAGTCGGATATTGAACTTTGTTACAGTATGTGGCAAAGTTGGA
ATATCCAGGTTAATGAAAGTTTTGAGTGAGACTTTGCCCCCATACGATTA
TTGCGTATGACAAATGTGAGTGAAAAATAGCATAGTATAAAGTTTTAAGA
ATGGTCTGTGGAACAAAGTGACGCAGTTTGGATAAAATGCCATTTGACCT
TCTAAGTTTTGCGGATAAATGATCAAAATGGAAATTCCACGCTAGACATT
CATCGAGAAAAAGACCAAGATATTTGAcacatttcaaaaatttcaagacA
TGCCCATCAAGAGTGAGATTCATTGTATATGGTACAGGTTTATTTTTACT
TCTAAACAGGATAACCTCACTTTTTGTAGTATTAAGAGAGATTTTGTTGG
CACGAAACCAAGAGGAGAGTCTGATTAAGTCAGAATTCACTTTCGTCTCA
AGTGAATTTAGATTCGAATCGGAAGAGAGAAGACAGGTGTCGTCAGCAAA
GAGGTTTGTTTTGCTATTCAGAATGGCTTTAGGAATGTCATTTATATATG
TTAGAAAAAGTAGAGGCCCTAGGACAGAGCCCTGGAGGACTCCGTGTCTG
ATAGATCGTTTTGAGGAATCATGCCCAGAAATTGAAACATATTGTTTCCT
CTCAGTCAGGTAAGATCGAAACCAGAGTTTCGCAACGCCACGTATGCCAT
AGTGATGAAGTTTTGATAGAAGAATTTCATGATCTACTGTATCGAAAGCT
TTTTGAAGATCAATGAATACCCCGCAAGAATACAACCCTTTGTCAATATT
TGACCGAATTTTTTCTGTTAGATTTATTAATGCGTGAGAAGTAGAGTGTT
TATTACGAAatccaaattgttttttgaAGATGCTGTTAttaatgttaaga
aaatttacaactctgaatttaattaatttttcaaaaactttatcaATATT
AGAGAGGAGCGAAATTGGTCTAAAGTTGTTAGGATCGTATGG Coding sequence (CDS) from alignment at sc0000061:6779..7970 >TCONS_00005952 ID=TCONS_00005952|Name=TCONS_00005952|organism=Clytia hemisphaerica|type=CDS|length=933bp|location=Sequence derived from alignment at sc0000061:6779..7970 (Clytia hemisphaerica)
TTAATGAAAGTTTTGAGTGAGACTTTGCCCCCATACGATTATTGCGTATG
ACAAATGTGAGTGAAAAATAGCATAGTATAAAGTTTTAAGAATGGTCTGT
GGAACAAAGTGACGCAGTTTGGATAAAATGCCATTTGACCTTCTAAGTTT
TGCGGATAAATGATCAAAATGGAAATTCCACGCTAGACATTCATCGAGAA
AAAGACCAAGATATTTGAcacatttcaaaaatttcaagacATGCCCATCA
AGAGTGAGATTCATTGTATATGGTACAGGTTTATTTTTACTTCTAAACAG
GATAACCTCACTTTTTGTAGTATTAAGAGAGATTTTGTTGGCACGAAACC
AAGAGGAGAGTCTGATTAAGTCAGAATTCACTTTCGTCTCAAGTGAATTT
AGATTCGAATCGGAAGAGAGAAGACAGGTGTCGTCAGCAAAGAGGTTTGT
TTTGCTATTCAGAATGGCTTTAGGAATGTCATTTATATATGTTAGAAAAA
GTAGAGGCCCTAGGACAGAGCCCTGGAGGACTCCGTGTCTGATAGATCGT
TTTGAGGAATCATGCCCAGAAATTGAAACATATTGTTTCCTCTCAGTCAG
GTAAGATCGAAACCAGAGTTTCGCAACGCCACGTATGCCATAGTGATGAA
GTTTTGATAGAAGAATTTCATGATCTACTGTATCGAAAGCTTTTTGAAGA
TCAATGAATACCCCGCAAGAATACAACCCTTTGTCAATATTTGACCGAAT
TTTTTCTGTTAGATTTATTAATGCGTGAGAAGTAGAGTGTTTATTACGAA
atccaaattgttttttgaAGATGCTGTTAttaatgttaagaaaatttaca
actctgaatttaattaatttttcaaaaactttatcaATATTAGAGAGGAG
CGAAATTGGTCTAAAGTTGTTAGGATCGTATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005952-exon-sc0000061-1491911889:6779..7970 | TCONS_00005952-exon-sc0000061-1491911889:6779..7970 | Clytia hemisphaerica | exon |
| TCONS_00005952-exon-sc0000061-1510915933:6779..7970 | TCONS_00005952-exon-sc0000061-1510915933:6779..7970 | Clytia hemisphaerica | exon |
| TCONS_00005952-exon-sc0000061-1575043694:6779..7970 | TCONS_00005952-exon-sc0000061-1575043694:6779..7970 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:6779..7970 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
|
