TCONS_00005948 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005948
Unique NameTCONS_00005948
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2728

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005948 ID=TCONS_00005948|Name=TCONS_00005948|organism=Clytia hemisphaerica|type=transcript|length=2728bp
TTTGATTGTGACTTTGGTTGATTTGATCTGTATGTATTCCAATTCATTTT
AAGAAACATGGCTGCAAAAATGTTGATTTGCTTAATGGTATTGACAACCT
TATGTCACAACTCCTTGGCTATCATATGTAATATTGCACAGACTCCAGCT
GTGTTTGTGGATTGCGCAAATAAGAGGTTTGGAGATTTCCATGACAACGT
CTGTATGATCTCAATTATGGAGAAGACATGGAGTAATGTCACTTCAGGAT
GTTTCCCAAAACGACATCCTTTATCAAGATGTGACACTGAAGTCAATGTT
CCTGGTAGACCAACTGAAAAGaTATGCTGTTGTACGGCTGACCAATGTAA
CGATGACGTATTTATTACCGAATGTCGTGATGGGACAGCGCCCGCCGCCT
TCCCGCCCTTCACATGTCATCAAAGCGTGCAACAAACAGGAGCACCTTCA
GCTGGCCCGGCCGTCAGTGGCCCTATTCCCTGCAATTTATCGAAAGAACC
AATGCTGGACAAATGTCATTACACCAAGACGGAGGGCAATCGATCGGCAA
TTATCAGAGGGTGTGTGCCCAAAAACAGAGCCGACCAATGTGATAAGAAG
ATGGTTAAAGGTAACGAAAAGATGATCTCGTGTTGTTGCAATTCAACCAA
TTGCAATGATGACGCTTTCGTTGAAAAATGTTTGGCCAGTGCCGCTGCTC
CACCGTTAACGACAGCTGCAGGCGCATCTGGTTCACAACAAACTACAGCC
ATGCCATCAGCCAATGGAACAACAACCACACCATCAGCCAATCAAACGGC
ACCAGGAGGATCTTCTTCCGCTTCTAGCAATGAAAtcaacattgcaatcc
tttctcTTGCAGTGATCGCTTACAAATTAACGGCATAGATGTCCGAATAA
ATACTGGCAGTATATTATGATTTATtgaaaatacagttgacgctctctaa
attgatcttcaaggggaattggattttcatcggatAAGGTagtgtcgttt
atgagagtttcttgttgacggggactttaaatttcatcggataagggagc
ttatcgaataaaaGAGCGTcgttgtttatgagagtttcttgttgatgggg
actttaaatttcatcgaataagggagcctatcgaatagtagaacgtcgaa
taagagagcgatattagagagcgtcaactgtaatggATTTAAAAGGAAAC
TGCCCAAATGTGTAAGGTTGACCGAAACAATGACATGGTTTAATCTTAGT
AAATTATTACAGTTATCGTTTACgatttaatacaccttttcgaccatagc
caccaattgccgcgcgggcatatttttgtccgctttatccaaCTAAAACC
GTTCCAGCCCTTTTTCGCaccaatagacaatagaaaaatgcgtcaaaaaa
ggattgggacggttttagtgggataaagcggacaaaagaATGCCCGTGCG
aatacggtcgaaaaggtgtattatgaCATGGATTTTGCACTGAAACAATT
GTCAAATAGGGATATtgaattatttattttcttgCTAATTAGAATTTTAC
AAATAACAAATAAGATCGACAGTAATTGGAGCATTATGATAGAAATTATA
CACTAACATTTTAAGAATGAATTCGAATAAAATGATGTTTAAATATTCTA
TTAAGTTTTCTAGATTTTTCCACTTCACTAGCCTGAAAAACGTCATGATT
CCCAAAGTAGGTGTGTTGGAAACTAAAAACAGTCTCAAACCTTTTCTACC
ACCTAACCTACGGCCCATACTGCCTTGAACAAGAACCGGTGTAAAAAACC
CTTTCCAACATATGACAAATGCTATTTCTTGTCTAAGGCGTTTCGGTTTC
AGtcttaaatattcttaacaatTCATACTTCTTACACATAAATAAACGAT
AATGCACGCTTTCCTTAATGGACATAGTCTGTACCCACTATGTCGAGGAG
GTGTGACgcccagggtggtctggaaaataaaaaatccaggggcgTCTGTT
TTTTCGATTGTGAAAATCTACTGTGGTCAGTTAAATGAGgttaaaaatcc
agggtggtcatcAAAACGAGGTTGAAAATCAAGGGTGGtccaataaaaga
aagaaaaaaatccaaggggtcccgaaaaattgtaaaaaatcgAGGGGGTC
TCCTTTACCAAAAAGGACCTCCTTAACTTAATGggtataactttttttct
ggaaatgttCAATGACATAGCCGAAACCCAGTATAAAAACtactgaaaaa
ttttaaacattttatacACTTCAATTAAGTTACATCAAAACTTAACCATC
TCAATCATTATcctttgatgtttttaaaaatattcaaatcatTCCTTTAA
AGACAAATTATCACTTCATAAACAATGGGTATACACATTTTTACACTATC
CACATCATCGTAACAGACATCAACCGTTTTATCTTGAGGAGAGCATCCTG
ATGAGCCTCGCGATAAATCCCATTTGCTTATTTTCATCGCCTTAAGAGGC
AAAGCACACAAGTTAAACTTGGATAACCAGCAACTCCGGAATGCAGTTGT
GGATACTTTGACATGCTGATTTGACCTGCAAACATTGGTAGCTTCTTGTG
AGCAATCATCTTCGctacctgatgattaaaGTTAGAGCAAGTATGAAGTG
CAACATAGTCGAGTGCTTGAACGCCAAGGGGATAATCAGTAATCATTCGA
GTTACAAAAATTCAATTCATAGAGAGGC
Run BLAST on NCBI

protein sequence of TCONS_00005948-protein

>TCONS_00005948-protein ID=TCONS_00005948-protein|Name=TCONS_00005948-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
MAAKMLICLMVLTTLCHNSLAIICNIAQTPAVFVDCANKRFGDFHDNVCM
ISIMEKTWSNVTSGCFPKRHPLSRCDTEVNVPGRPTEKICCCTADQCNDD
VFITECRDGTAPAAFPPFTCHQSVQQTGAPSAGPAVSGPIPCNLSKEPML
DKCHYTKTEGNRSAIIRGCVPKNRADQCDKKMVKGNEKMISCCCNSTNCN
DDAFVEKCLASAAAPPLTTAAGASGSQQTTAMPSANGTTTTPSANQTAPG
GSSSASSNEINIAILSLAVIAYKLTA
Run BLAST on NCBI

transcript from alignment at sc0000061:948037..957853-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005948 ID=TCONS_00005948|Name=TCONS_00005948|organism=Clytia hemisphaerica|type=transcript|length=9817bp|location=Sequence derived from alignment at sc0000061:948037..957853- (Clytia hemisphaerica)
TTTGATTGTGACTTTGGTTGATTTGATCTGTATGTATTCCAATTCATTTT
AAGAAACATGGCTGCAAAAATGTTGATTTGCTTAATGGTATTGACAACCT
TATGTCACAACTCCTTGGCTATCATATGTAATATTGCACAGACTCCAGCT
GTGTTTGTGGATTGCGCAAGTATTTAAAGATTCTTTGGATTAAAAGTTTT
CTCAAATTTACCTTATTCACNACCAAACGATATTTCTGAGCACTGGTTGG
TTCATTTAGATCAATTACATAATAATTCTAAGTTTTAACCAATCAATCAA
ATCGATTTGATTGTTAAGGATACTTTTGAATGGTTATGGGTAAGTACGGT
AATTGGTGGCAAACACCCGGTCTGTTTTGGGTGCTTCAGTATAAAACATT
ATATTATGAAAACCATAAACAAAAAACTTTTAAAAAAATGTAAATTTTAA
AGTCTTTGGTGATAATTATGTTCTTAGGAAAGATTGAGCATCCCATTCTT
TGACCATGTTCANGATGTTCGCCACTACTTTTTATTTTTTTAAATTCATA
CCGTATTCACCTAGAACAATCCAAAATTTCCCTTAAGGGCTCTGACCATA
GTCCACAAATTGATTTTGGTATTTGAACATAAAAGTTATATTTCAGGTTC
CTTAACATTTTTAACAAAGAATTGCCTTTATAAATTGCTTTTTAATCGAA
TCCCTTAANAGATTGAGCATCCCATTCTTTGACCATGTTCAGATGTTACG
GTTCCGTATCATTCCGAAACGAAACGGGTCCGAAATAAGACCATGTTCAA
ACGTTACGGTCTCGTATCACTCCGGTATGGTTTCTGTTACGGGTCGAGAG
TGTTCATATTAGTTCCAAACGTTTCGGAGCAAGAAAACGGAGCAGTTTCG
TTCCGATGAAAAAAGTGGAGCGAAACCGTTTCTATCCGTTATGCTTTGTT
ACGTCTTCTTTTTTTGACGTTTCAAATTCTGACGTTCACACTTAGACCAT
GTTCGCACGTGACGGTTCCGTTTCGTTCCGAAACGAAATGAAGCCATTTC
ATTGTTTACATTCAAGTGTTATGTCACTTCTAACCAATATAGTGGCTTTC
TATTCGTTTCAGAGCAAAACGGAACCGTCACGTGCGAACATGGTCTTATT
TCGGACCCGTTTCGTTTCGGAATGATACGGAACCGTAACATCTGAACAAA
TTTCAATTCAAATTCAAATTTCAAAACTTATTTATTCGCCTGCATATCAT
TAAAAATTTACATATTTAAGTTTGTATAAATTAGGGGAGGGGATGCAGGC
CAGGAGTCCATCCAATAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTAGAGTAACAATATTTCAATATTCCAAATAACAAAG
TAAAAAAAAAACTCAACGTAACTATCGACAAAAAAAAATATAGTTATATA
AGTAATCTTTTGTTTTGATAAATCAAATTAGAGTATTTTTATATCTATAT
GGACTTTCATTTTTCTGGTATGCAAGAGGTCAATTAAAACATGAACATGG
TCAAAGAACGGGATGCTCGATCTTTCCTAAGAACATAATTATCACCAAAG
ACTTTAAAATTTACATTTTTTTAGAGTTTTTTTTTTTCCGACGAATATTC
CTCTAGTAACATTAGGTTAATTTGAAATGAAGATGAAAAAATAACAAAGA
CCTGAGCAATCAATGCTTTTTTAGTTTCTGTCAGGATCTGTGGCGAAATA
TTGCACCAAAACGAAGGATAATCCGAAAAATTTAACCATCATAATCTTAA
TNTTTCTGTCAGGATCTATGGCGAAATATTGCACCAAAACGAAGGATAAT
CCGAAAAATTTAACCATCATAATCTTAATTAGAAAAATGACGATAAATGT
TGTTGTTAAAAAATTCAATAACATAAATTTCCAATAATAAATTCAAAAAT
ATTGCACCCAAGCATTCAATTTCAATCGGTAAAAAAAATTGAAAGTTTCA
TAAAAAATGTTGGCATTCGTTGGCGAAAACTTCTCGCTAGACAAGAATAA
TTGCCGGCTAAGCAATTTTTTATCGTCTTGCCGACGAATTTTATACTGAG
AAGGTACCTAAGAACAACTTAAGAATCTCGTGACCTTAGACTCAGACGTA
GCCTAGAAAATCTATATGTCAAATGCAAATCTTTTAAGCTATTCATTCAA
TCAAAAAAGTAGCCTATTAAAAATTAAGAACAAAGCTTATTGGTTCAAAC
TGCAACACTTTCCTACTCAAAATTTTTTCTAGATAAGAGGTTTGGAGATT
TCCATGACAACGTCTGTATGATCTCAATTATGGAGAAGACATGGAGTAAT
GTCACTTCAGGATGTTTCCCAAAACGACATCCTTTATCAAGATGTGACAC
TGAAGTCAATGTTCCTGGTAGACCAACTGAAAAGGTTTGTTTATCTGGCA
CCCAGATGTAGAAATTCTCATCCAACAGGCGAATTTTCAACATCTGAAAG
GTTTAGATTACGGAATTTCGCAAGAACGCGTCAAGGATTTTGCAGCAGGA
GGCCTGGACCCAAGCCCTCGTTTTCGGGGAATGGCGGGTCCAACCGAAAT
ATTTTCAGGTTTACGCGCAAGGGTAGTTAACCCCGACTGGGGCTGACAAT
CATTCCTATCCGATAGGAGATTAATTTTGAATTTTAAACAAAAAAAATTA
AAGACAAACGCCCGGGCTATTTTGGGTGTTTCTGTATAAAACTTTACGTC
ATGAATATCATGAATTTTCTTTATTTCTTAGATATGCTGTTGTACGGCTG
ACCAATGTAACGATGACGTATTTATTACCGAATGTCGTGATGGGACAGCG
CCCGCCGCCTTCCCGCCCTTCACATGTCATCAAAGCGTGCAACAAACAGG
AGCACCTTCAGCTGGCCCGGCCGTCAGTGGCCCTATTCCCTGCAATTGTA
AGTTCATTGAACAAGTAAAAGCCCGTTCATAAGTGGTTTAGAGTGGTCTA
GAGAGATGGGAGGAGAAATTTTATTTACACATTTAAAAGTTATTAGCGCA
GTGCTATAATTTGTCAATTATTCAAAGGATTTTTTGGTTTGAGAGACTTG
ATTTATCTGTCTGGACGAGGACTCAAACCGTTAACGAACATAAGATGAAG
TGGTTTAGAATAATCTTCCTCTAAAAGGCTCGCAAACATGTACGTAAACT
TCAAAAATTATCAAAGCGTGCAACAAGTAAAAGCCCGTTCAGCTGGCCCG
ACCGTCAGTGGCCCTATACCCTGTAATTGTAAGCGGTTTAGAGTAATCTT
CCTATAAAAGATTCGTAAACATATACGCAAACTTCAATATTCATTTCCTT
GGAGTGGTTCATTTAGCTAGCTTAGATACCGGTTAAATGGCTCTCTCTTG
ATGTCAAAATGGTTTTTAAATTTTGTTTTGATATTCTGAAAGCTAATTAA
TTTTTTTTTCGACATTTAAATTAGATTTCAGTCTATAGGCTGTACAGCGC
GGCAAGACAATTAAAAACAGTTTTTTTCGGAACTTACGTCATGTCAACTT
ACACTGAAAATTTCTAAATTATATCATTTTTGGTTCCTAAGACATTGAAG
TTTTTGAAAAATCTAACCTTTTCCTCTAATATATCCTCTATAATAATTTA
GGGTCACTTTTTAAAAGTGCTGACTTCATCAAATATAGAAGGACTAACAA
AAAAACTTTTCTTGGAAAATGAAGTTTGATAAAAGTTAGGAAAGCATGTA
AAGTTTCAAGGCAGTAGCTCTACTTCAAGGGTAGGGTGGTTTGTCCCCCC
CTTCCGTGCTAAATAGGGTTAAGCTTGAAATTTTAAAATGAAACACAAGG
TAATAAATAAAGCGTTGTTTCTCTCATTGTTTCTCAGTATCGAAAGAACC
AATGCTGGACAAATGTCATTACACCAAGACGGAGGGCAATCGATCGGCAA
TTATCAGAGGGTGTGTGCCCAAAAACAGAGCCGACCAATGTGATAAGAAG
ATGGTTAAAGGTAAGTAGGTTCCCAGCTGGCACACAACGTTGTTTCAACG
TTTATCTAACGTTCACAACGTCCATATAACGTTAGATTAACGTTGAAACA
GCGTTGTGTGCCAGCTGGGTTAAAACTTCATGGTAGGGTGGACTGGGTTC
GATTATACTGGGGATTGGCATCAAATGGCTGAAGGATTACGTTGTTAGGC
TGTTTGCATATCGTCCAATGAATACGATTAAATTCTTGCTTCTTATACTT
CTACACAGGAAAAAATTTTCGATTTCCAAGGTTGGAAATTTCAAGTTTTC
TTAGTTGGAAAAAAGATAAAATCCAATGGAAAATCCAACCTGAAAATGTG
GGACATTCTCCAAGGTTGAAAATTTTGCATTTTCCATGGCTTGGAATTTT
CGTAAATCTAGGTTGAAAAAAGCCAAAATCCAAATTTAGCAAGGTTGGAA
TTTTCGTAAATCCAGGTTGAAAAAAGCCAAAATCCAAATTTAACAAGGTT
GGAATTTTGTAAAATTCAGTTGGAAAAAAGCCAAAATCCAAGCTTAAACA
AGGTTGGAATTTTTTAAAATTCAGTTGGAAAAAAGCCAAAATCCAAGCTT
AAACAAGGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTATT
TGAAACTATGACACAAGTACCCTATGTGCTTCACTGTGCGAACTCACTGC
GATTGACCGAGGCCGCTCCGAAGAGACGCCTCACTTGACGGAAACTTACA
GCTTGACTGCTCACATTATAGCCTAATATCTAGGTTAGCTATACATCAAA
ACAGTTTTGAGCGAAAAATCGCTTGTGGTTTTCNTAGGTTAGCTATACAT
CAAAACAGTTTTGAGCAAAAAATTGCTTGTGGTTTTCCCAAGGACATGCG
CAGAAAATGGTTAGAAAAACGTAATTTCCACATGGATTTTTAACGTTTTC
CAAACTGTTTGAAAAAACACAAATTTCCAACCCAAAAAGTCTAGTTTTCC
AATCGAAAGAGTTTCAATTTCACAAAAATGTAATTTTCACATGGATTTTT
AACGTTTTCCAAAATGTTTGGAGAAACACAAATTTCCAACCCAAAAAGTC
TAGTTTTCCAATCGAAAGAGTTTCAATTTCACAAAAATGTAATTTTCACA
TGGATTTTTAACGTTTTCCAAACTGTTTGGAGAAACACAAATTTCCAACC
CAAAAAGTCTAGTTTTCCAATCGAAAGAGTTTCAATTTCACAAAAATGTA
ATTTCCACATGGATTTTTAACGTTTTCCAAACTGTTTGGAGAAACACAAA
TTTCCAACCCAAAAAGTCTAATTTTCCAAGAAAGGGTCTCAATCTTAGAA
AAATGTAATTTCCACATGGATTTTTAACGTTTTCCAAACTGTTTGGGAGA
AACACAAATTTCAGACCCAAAAATTCTTAGTTTTTCAACCTGAGGTATCA
AATTTACAAAAATATGTATTTTCAGATCGATTTTTGACCTTTTTTTTCAA
TTCCAAAACTGTTTGGAAAATAAAAATTTCCCACCCAAAAAGTCATGTTT
TCCAACCAGCCTTGGAAAATTGTCATTTCTACATGGGTTTTTTTCACTTG
ATTTTTCAAGGGCATTGGTTTATTCTACAAAACCTATGGGTAATTTACGT
TTTCCAAATCAGCTTAAAGTAATCGCTCAAATTTCCAACCTTCAATTATA
AAACCAAAATTTCCAACCCAAAAATATTGAATTTCCAACCCTGGAAATCG
AAAATTTTTTCCTGTGCTATACTACCGAGTTTATATGTGTGTTTTTCAGC
GACGGAGACGAGTAATTTGTCCACATCCTGACTGACAAAATCAGCACTTT
TACCGTCCTCAATTTTGCGGGTCTGAACTGCGGATTATTCCAAATTACTT
CAGTCACTCTACCGTCCTTGAAAGTGAAAATATATAAACTTGCTACTGCT
ACCTGCTATTCAGACTGTTGCGTTGTAGAATACAGGCCTAGCAAACGCAG
ATTAACGTTTCGGTGTTATTTAGGAATATATCTCAAATGCTATCTTTATC
TAGCTCCTCTGGAAATTGTAGAGACAGTAAACACGAACTTATTCATCAAA
CTGCATAAAAATTAAAACGCTTTACTAGCGTGAGACCAATTTGCTGCGAC
CCGAACAGTCTATGGTAAAATGTTTTGTTTTTTTTAATTTAATTTAATAT
ATTAAAGGTAACGAAAAGATGATCTCGTGTTGTTGCAATTCAACCAATTG
CAATGATGACGCTTTCGTTGAAAAATGTTTGGCCAGTGCCGCTGCTCCAC
CGTTAACGACAGCTGCAGGCGCATCTGGTTCACAACAAACTACAGCCATG
CCATCAGCCAATGGAACAACAACCACACCATCAGCCAATCAAACGGCACC
AGGAGGATCTTCTTCCGCTTCTAGCAATGAAATCAACATTGCAATCCTTT
CTCTTGCAGTGATCGCTTACAAATTAACGGCATAGATGTCCGAATAAATA
CTGGCAGTATATTATGATTTATTGAAAATACAGTTGACGCTCTCTAAATT
GATCTTCAAGGGGAATTGGATTTTCATCGGATAAGGTAGTGTCGTTTATG
AGAGTTTCTTGTTGACGGGGACTTTAAATTTCATCGGATAAGGGAGCTTA
TCGAATAAAAGAGCGTCGTTGTTTATGAGAGTTTCTTGTTGATGGGGACT
TTAAATTTCATCGAATAAGGGAGCCTATCGAATAGTAGAACGTCGAATAA
GAGAGCGATATTAGAGAGCGTCAACTGTAATGGATTTAAAAGGAAACTGC
CCAAATGTGTAAGGTTGACCGAAACAATGACATGGTTTAATCTTAGTAAA
TTATTACAGTTATCGTTTACGATTTAATACACCTTTTCGACCATAGCCAC
CAATTGCCGCGCGGGCATATTTTTGTCCGCTTTATCCAACTAAAACCGTT
CCAGCCCTTTTTCGCACCAATAGACAATAGAAAAATGCGTCAAAAAAGGA
TTGGGACGGTTTTAGTGGGATAAAGCGGACAAAAGAATGCCCGTGCGAAT
ACGGTCGAAAAGGTGTATTATGACATGGATTTTGCACTGAAACAATTGTC
AAATAGGGATATTGAATTATTTATTTTCTTGCTAATTAGAATTTTACAAA
TAACAAATAAGATCGACAGTAATTGGAGCATTATGATAGAAATTATACAC
TAACATTTTAAGAATGAATTCGAATAAAATGATGTTTAAATATTCTATTA
AGTTTTCTAGATTTTTCCACTTCACTAGCCTGAAAAACGTCATGATTCCC
AAAGTAGGTGTGTTGGAAACTAAAAACAGTCTCAAACCTTTTCTACCACC
TAACCTACGGCCCATACTGCCTTGAACAAGAACCGGTGTAAAAAACCCTT
TCCAACATATGACAAATGCTATTTCTTGTCTAAGGCGTTTCGGTTTCAGT
CTTAAATATTCTTAACAATTCATACTTCTTACACATAAATAAACGATAAT
GCACGCTTTCCTTAATGGACATAGTCTGTACCCACTATGTCGAGGAGGTG
TGACGCCCAGGGTGGTCTGGAAAATAAAAAATCCAGGGGCGTCTGTTTTT
TCGATTGTGAAAATCTACTGTGGTCAGTTAAATGAGGTTAAAAATCCAGG
GTGGTCATCAAAACGAGGTTGAAAATCAAGGGTGGTCCAATAAAAGAAAG
AAAAAAATCCAAGGGGTCCCGAAAAATTGTAAAAAATCGAGGGGGTCTCC
TTTACCAAAAAGGACCTCCTTAACTTAATGGGTATAACTTTTTTTCTGGA
AATGTTCAATGACATAGCCGAAACCCAGTATAAAAACTACTGAAAAATTT
TAAACATTTTATACACTTCAATTAAGTTACATCAAAACTTAACCATCTCA
ATCATTATCCTTTGATGTTTTTAAAAATATTCAAATCATTCCTTTAAAGA
CAAATTATCACTTCATAAACAATGGGTATACACATTTTTACACTATCCAC
ATCATCGTAACAGACATCAACCGTTTTATCTTGAGGAGAGCATCCTGATG
AGCCTCGCGATAAATCCCATTTGCTTATTTTCATCGCCTTAAGAGGCAAA
GCACACAAGTTAAACTTGGATAACCAGCAACTCCGGAATGCAGTTGTGGA
TACTTTGACATGCTGATTTGACCTGCAAACATTGGTAGCTTCTTGTGAGC
AATCATCTTCGATATCCGGAGATGGTATTTGTTCAGTAAACACTCCATTA
AAGAAGATCGAAACAATGATCATAGCTTGAACGAAAGAGCGAAACATTTT
TTTTTTTTGAAATGTGGTTTCTCTTGAACCGTATTGATGATTCTCGAAAG
ATTAGAGAATGAATAAGAATCTTCCAAGTAACAAATTTTTGATTACTAAT
TGCTTAATTATTAACATGTGAATATTCTAGATCAGAAAACGACATTATAG
TGTGAAAATTTTGTAATTGGAGGATGACATATTATTTTCACATGGGGATT
ATTAGCGTTATTATTAAAATGTGAATATTCTAGATCAGAAAACGACATTA
TAGTGTGAAAATTTTGTAATTGGAAGATGACATATTTCACATGGGGATTA
TCAGCGTTGGGAAATTTACACGCTTTTTTAAATATGAATACACTTTATAA
GAATGTCCATGATGAAATGGGAAAAAAATTAAGAATAATGCTAAGAATAT
CACCATCATGGAATTTTGCTACTGAAGCTAAGAATGCCATTTTTGAGCAT
TTTCAATTATAAATTGTCAATTACCCCCAAGTAAGGATCACTCCTTTCAC
ACAAATGCCATTTTATGCTTGAGGTGTATGTTAATGTTAAATCTAGTCTG
AATTATGATCCTAACCTAAGAATGCTGTAAGAATATTTTAGGATGATTTT
CCCCCAAAAAAAATATCCATGATGAAATGGATTACACCATTCTTATAAAA
AAAGCTTGTATCTTGTGACCCGATAAAGAAACAAGCCGGAACGCTGATTG
GACCTACCTGATGATTAAAGTTAGAGCAAGTATGAAGTGCAACATAGTCG
AGTGCTTGAACGCCAAGGGGATAATCAGTAATCATTCGAGTTACAAAAAT
TCAATTCATAGAGAGGC

Coding sequence (CDS) from alignment at sc0000061:948037..957853-

>TCONS_00005948 ID=TCONS_00005948|Name=TCONS_00005948|organism=Clytia hemisphaerica|type=CDS|length=4155bp|location=Sequence derived from alignment at sc0000061:948037..957853- (Clytia hemisphaerica)
GTAACGAAAAGATGATCTCGTGTTGTTGCAATTCAACCAATTGCAATGAT
GACGCTTTCGTTGAAAAATGTTTGGCCAGTGCCGCTGCTCCACCGTTAAC
GACAGCTGCAGGCGCATCTGGTTCACAACAAACTACAGCCATGCCATCAG
CCAATGGAACAACAACCACACCATCAGCCAATCAAACGGCACCAGGAGGA
TCTTCTTCCGCTTCTAGCAATGAAATCAACATTGCAATCCTTTCTCTTGC
AGTGATCGCTTACAAATTAACGGCATAGTATCGAAAGAACCAATGCTGGA
CAAATGTCATTACACCAAGACGGAGGGCAATCGATCGGCAATTATCAGAG
GGTGTGTGCCCAAAAACAGAGCCGACCAATGTGATAAGAAGATGGTTAAA
GATATGCTGTTGTACGGCTGACCAATGTAACGATGACGTATTTATTACCG
AATGTCGTGATGGGACAGCGCCCGCCGCCTTCCCGCCCTTCACATGTCAT
CAAAGCGTGCAACAAACAGGAGCACCTTCAGCTGGCCCGGCCGTCAGTGG
CCCTATTCCCTGCAATTATAAGAGGTTTGGAGATTTCCATGACAACGTCT
GTATGATCTCAATTATGGAGAAGACATGGAGTAATGTCACTTCAGGATGT
TTCCCAAAACGACATCCTTTATCAAGATGTGACACTGAAGTCAATGTTCC
TGGTAGACCAACTGAAAAGATGGCTGCAAAAATGTTGATTTGCTTAATGG
TATTGACAACCTTATGTCACAACTCCTTGGCTATCATATGTAATATTGCA
CAGACTCCAGCTGTGTTTGTGGATTGCGCAAGTAACGAAAAGATGATCTC
GTGTTGTTGCAATTCAACCAATTGCAATGATGACGCTTTCGTTGAAAAAT
GTTTGGCCAGTGCCGCTGCTCCACCGTTAACGACAGCTGCAGGCGCATCT
GGTTCACAACAAACTACAGCCATGCCATCAGCCAATGGAACAACAACCAC
ACCATCAGCCAATCAAACGGCACCAGGAGGATCTTCTTCCGCTTCTAGCA
ATGAAATCAACATTGCAATCCTTTCTCTTGCAGTGATCGCTTACAAATTA
ACGGCATAGTATCGAAAGAACCAATGCTGGACAAATGTCATTACACCAAG
ACGGAGGGCAATCGATCGGCAATTATCAGAGGGTGTGTGCCCAAAAACAG
AGCCGACCAATGTGATAAGAAGATGGTTAAAGATATGCTGTTGTACGGCT
GACCAATGTAACGATGACGTATTTATTACCGAATGTCGTGATGGGACAGC
GCCCGCCGCCTTCCCGCCCTTCACATGTCATCAAAGCGTGCAACAAACAG
GAGCACCTTCAGCTGGCCCGGCCGTCAGTGGCCCTATTCCCTGCAATTAT
AAGAGGTTTGGAGATTTCCATGACAACGTCTGTATGATCTCAATTATGGA
GAAGACATGGAGTAATGTCACTTCAGGATGTTTCCCAAAACGACATCCTT
TATCAAGATGTGACACTGAAGTCAATGTTCCTGGTAGACCAACTGAAAAG
ATGGCTGCAAAAATGTTGATTTGCTTAATGGTATTGACAACCTTATGTCA
CAACTCCTTGGCTATCATATGTAATATTGCACAGACTCCAGCTGTGTTTG
TGGATTGCGCAAGTAACGAAAAGATGATCTCGTGTTGTTGCAATTCAACC
AATTGCAATGATGACGCTTTCGTTGAAAAATGTTTGGCCAGTGCCGCTGC
TCCACCGTTAACGACAGCTGCAGGCGCATCTGGTTCACAACAAACTACAG
CCATGCCATCAGCCAATGGAACAACAACCACACCATCAGCCAATCAAACG
GCACCAGGAGGATCTTCTTCCGCTTCTAGCAATGAAATCAACATTGCAAT
CCTTTCTCTTGCAGTGATCGCTTACAAATTAACGGCATAGTATCGAAAGA
ACCAATGCTGGACAAATGTCATTACACCAAGACGGAGGGCAATCGATCGG
CAATTATCAGAGGGTGTGTGCCCAAAAACAGAGCCGACCAATGTGATAAG
AAGATGGTTAAAGATATGCTGTTGTACGGCTGACCAATGTAACGATGACG
TATTTATTACCGAATGTCGTGATGGGACAGCGCCCGCCGCCTTCCCGCCC
TTCACATGTCATCAAAGCGTGCAACAAACAGGAGCACCTTCAGCTGGCCC
GGCCGTCAGTGGCCCTATTCCCTGCAATTATAAGAGGTTTGGAGATTTCC
ATGACAACGTCTGTATGATCTCAATTATGGAGAAGACATGGAGTAATGTC
ACTTCAGGATGTTTCCCAAAACGACATCCTTTATCAAGATGTGACACTGA
AGTCAATGTTCCTGGTAGACCAACTGAAAAGATGGCTGCAAAAATGTTGA
TTTGCTTAATGGTATTGACAACCTTATGTCACAACTCCTTGGCTATCATA
TGTAATATTGCACAGACTCCAGCTGTGTTTGTGGATTGCGCAAGTAACGA
AAAGATGATCTCGTGTTGTTGCAATTCAACCAATTGCAATGATGACGCTT
TCGTTGAAAAATGTTTGGCCAGTGCCGCTGCTCCACCGTTAACGACAGCT
GCAGGCGCATCTGGTTCACAACAAACTACAGCCATGCCATCAGCCAATGG
AACAACAACCACACCATCAGCCAATCAAACGGCACCAGGAGGATCTTCTT
CCGCTTCTAGCAATGAAATCAACATTGCAATCCTTTCTCTTGCAGTGATC
GCTTACAAATTAACGGCATAGTATCGAAAGAACCAATGCTGGACAAATGT
CATTACACCAAGACGGAGGGCAATCGATCGGCAATTATCAGAGGGTGTGT
GCCCAAAAACAGAGCCGACCAATGTGATAAGAAGATGGTTAAAGATATGC
TGTTGTACGGCTGACCAATGTAACGATGACGTATTTATTACCGAATGTCG
TGATGGGACAGCGCCCGCCGCCTTCCCGCCCTTCACATGTCATCAAAGCG
TGCAACAAACAGGAGCACCTTCAGCTGGCCCGGCCGTCAGTGGCCCTATT
CCCTGCAATTATAAGAGGTTTGGAGATTTCCATGACAACGTCTGTATGAT
CTCAATTATGGAGAAGACATGGAGTAATGTCACTTCAGGATGTTTCCCAA
AACGACATCCTTTATCAAGATGTGACACTGAAGTCAATGTTCCTGGTAGA
CCAACTGAAAAGATGGCTGCAAAAATGTTGATTTGCTTAATGGTATTGAC
AACCTTATGTCACAACTCCTTGGCTATCATATGTAATATTGCACAGACTC
CAGCTGTGTTTGTGGATTGCGCAAGTAACGAAAAGATGATCTCGTGTTGT
TGCAATTCAACCAATTGCAATGATGACGCTTTCGTTGAAAAATGTTTGGC
CAGTGCCGCTGCTCCACCGTTAACGACAGCTGCAGGCGCATCTGGTTCAC
AACAAACTACAGCCATGCCATCAGCCAATGGAACAACAACCACACCATCA
GCCAATCAAACGGCACCAGGAGGATCTTCTTCCGCTTCTAGCAATGAAAT
CAACATTGCAATCCTTTCTCTTGCAGTGATCGCTTACAAATTAACGGCAT
AGTATCGAAAGAACCAATGCTGGACAAATGTCATTACACCAAGACGGAGG
GCAATCGATCGGCAATTATCAGAGGGTGTGTGCCCAAAAACAGAGCCGAC
CAATGTGATAAGAAGATGGTTAAAGATATGCTGTTGTACGGCTGACCAAT
GTAACGATGACGTATTTATTACCGAATGTCGTGATGGGACAGCGCCCGCC
GCCTTCCCGCCCTTCACATGTCATCAAAGCGTGCAACAAACAGGAGCACC
TTCAGCTGGCCCGGCCGTCAGTGGCCCTATTCCCTGCAATTATAAGAGGT
TTGGAGATTTCCATGACAACGTCTGTATGATCTCAATTATGGAGAAGACA
TGGAGTAATGTCACTTCAGGATGTTTCCCAAAACGACATCCTTTATCAAG
ATGTGACACTGAAGTCAATGTTCCTGGTAGACCAACTGAAAAGATGGCTG
CAAAAATGTTGATTTGCTTAATGGTATTGACAACCTTATGTCACAACTCC
TTGGCTATCATATGTAATATTGCACAGACTCCAGCTGTGTTTGTGGATTG
CGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003383XLOC_003383Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005948-exon-sc0000061-1575043694:957685..957853TCONS_00005948-exon-sc0000061-1575043694:957685..957853Clytia hemisphaericaexon
TCONS_00005948-exon-sc0000061-1575043694:955020..955171TCONS_00005948-exon-sc0000061-1575043694:955020..955171Clytia hemisphaericaexon
TCONS_00005948-exon-sc0000061-1575043694:954507..954672TCONS_00005948-exon-sc0000061-1575043694:954507..954672Clytia hemisphaericaexon
TCONS_00005948-exon-sc0000061-1575043694:953444..953566TCONS_00005948-exon-sc0000061-1575043694:953444..953566Clytia hemisphaericaexon
TCONS_00005948-exon-sc0000061-1575043694:948943..950946TCONS_00005948-exon-sc0000061-1575043694:948943..950946Clytia hemisphaericaexon
TCONS_00005948-exon-sc0000061-1575043694:948037..948150TCONS_00005948-exon-sc0000061-1575043694:948037..948150Clytia hemisphaericaexon
TCONS_00005948-exon-sc0000061-1510915933:957685..957853TCONS_00005948-exon-sc0000061-1510915933:957685..957853Clytia hemisphaericaexon
TCONS_00005948-exon-sc0000061-1510915933:955020..955171TCONS_00005948-exon-sc0000061-1510915933:955020..955171Clytia hemisphaericaexon
TCONS_00005948-exon-sc0000061-1510915933:954507..954672TCONS_00005948-exon-sc0000061-1510915933:954507..954672Clytia hemisphaericaexon
TCONS_00005948-exon-sc0000061-1510915933:953444..953566TCONS_00005948-exon-sc0000061-1510915933:953444..953566Clytia hemisphaericaexon
TCONS_00005948-exon-sc0000061-1510915933:948943..950946TCONS_00005948-exon-sc0000061-1510915933:948943..950946Clytia hemisphaericaexon
TCONS_00005948-exon-sc0000061-1510915933:948037..948150TCONS_00005948-exon-sc0000061-1510915933:948037..948150Clytia hemisphaericaexon
TCONS_00005948-exon-sc0000061-1491911889:957685..957853TCONS_00005948-exon-sc0000061-1491911889:957685..957853Clytia hemisphaericaexon
TCONS_00005948-exon-sc0000061-1491911889:955020..955171TCONS_00005948-exon-sc0000061-1491911889:955020..955171Clytia hemisphaericaexon
TCONS_00005948-exon-sc0000061-1491911889:954507..954672TCONS_00005948-exon-sc0000061-1491911889:954507..954672Clytia hemisphaericaexon
TCONS_00005948-exon-sc0000061-1491911889:953444..953566TCONS_00005948-exon-sc0000061-1491911889:953444..953566Clytia hemisphaericaexon
TCONS_00005948-exon-sc0000061-1491911889:948943..950946TCONS_00005948-exon-sc0000061-1491911889:948943..950946Clytia hemisphaericaexon
TCONS_00005948-exon-sc0000061-1491911889:948037..948150TCONS_00005948-exon-sc0000061-1491911889:948037..948150Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005948-proteinTCONS_00005948-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:948037..957853 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.149962	0.204066	0.182026	0.172984	1.85266	1.42881	3.18384	3.44553	3.8765	3.20235	2.84634	3.42233	14.8098	14.2796	6.69321	4.8896	0.937163	0.638925	28.4873	27.165	0.220353	0.193217	0.20228	0.322845	0.37545	0.198006	0.229407	0.170455	0.100563	0.0828799
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005948 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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