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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005947 ID=TCONS_00005947|Name=TCONS_00005947|organism=Clytia hemisphaerica|type=transcript|length=3870bpRun BLAST on NCBI protein sequence of TCONS_00005947-protein >TCONS_00005947-protein ID=TCONS_00005947-protein|Name=TCONS_00005947-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1017bp MLFTLRRRLGTTNKWLVFIMVLQCMAEKGIIGGAKTNRLPQFSQEKRAKSRun BLAST on NCBI transcript from alignment at sc0000061:904265..936068- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005947 ID=TCONS_00005947|Name=TCONS_00005947|organism=Clytia hemisphaerica|type=transcript|length=31804bp|location=Sequence derived from alignment at sc0000061:904265..936068- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000061:904265..936068- >TCONS_00005947 ID=TCONS_00005947|Name=TCONS_00005947|organism=Clytia hemisphaerica|type=CDS|length=70242bp|location=Sequence derived from alignment at sc0000061:904265..936068- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005947 vs. Swiss-Prot (Human)
Match: CELR2 (Cadherin EGF LAG seven-pass G-type receptor 2 OS=Homo sapiens GN=CELSR2 PE=1 SV=1) HSP 1 Score: 228.794 bits (582), Expect = 2.654e-60 Identity = 179/580 (30.86%), Postives = 288/580 (49.66%), Query Frame = 3
Query: 234 PQFSQEKRAKSINEEQPVGTFILRSTATDYEGD-----EIVYSI----EGDTNGYFQIDPKNGDLKTARIIDKESLDNNVISFKIVAAEGRNPSQKSYQ-KVXXXXXXXXXXPPVFTPESTDKVVNLTENLSGSTFVTQIRAVDKDKSTSGILFYTIAKGNEAKYFKMNLYNGKITTTKELDYEAVKSFKLEVIAMD-GRPKSKGVHKVRTNVYINVLDEDDNGAKFDSN-YSKPIIEGEYTGQKLLRVHAEDQDKGINSPIIYRIEPASNPDNIFSINK-DGYIFVNGIIDRERTPVYNLELRAEEEEDSHFNPLHRPAKATLTVTVEDTNDNPPIFTQHNFLGHVTEHESPGTRVATVKAVDRDEGEHAKFTYRL-EGKDSEMFRINEEG-----DIFVNGDTDREKKYLYRFYAIATQAGQPEAKTQVDIIVHDKNDHKPVFKKKIYLSSVPENSPLNTTIVKVEAEDRDENLNGKIRYSIEPHADDLCFHIDPKKGVISLRCQVDREYKNRYDFLVTAADQAENLP-RSSQVRVQVDIEDVNDNFPVFTKTEYFKSINYDESIGSTILHVKATDKD 1913
P F Q++ +S+ E VG +L ATD GD I+Y + G + F+IDP++G ++T +D+E +++ ++ + + +GR+P +S V + + D NDN P F+ + VV + E+++ V ++ A D+DK ++ ++ Y+I GN F ++ G + LDYE K + L V A D GRP V + V + VLD +DN F S + ++E G +L V A D D G N+ + YR+ + D F+IN G+I V +DRE Y+ + A + H P A A+++VTV D NDN P FTQ + + E + GT V TV AVDRD H+ TY++ G F I + + + D E++Y+ A+ G + Q+ + V D N H+PVF+ Y +V E+ P TT+V + A D D N +I Y +E F ID G ++ + ++D E + Y +TA D +P +S +++ + DVNDN P F + Y S+ D +++L + ATD+D
Sbjct: 287 PVFEQQEYKESLRENLEVGYEVLTVRATD--GDAPPNANILYRLLEGSGGSPSEVFEIDPRSGVIRTRGPVDREEVESYQLTVE-ASDQGRDPGPRSTTAAVFLSVEDDNDNAPQFSEKRY--VVQVREDVTPGAPVLRVTASDRDKGSNAVVHYSIMSGNARGQFYLDAQTGALDVVSPLDYETTKEYTLRVRAQDGGRPPLSNVSGL---VTVQVLDINDNAPIFVSTPFQATVLESVPLGYLVLHVQAIDADAGDNARLEYRLAGVGH-DFPFTINNGTGWISVAAELDREEVDFYSFGVEARD----HGTPA-LTASASVSVTVLDVNDNNPTFTQPEYTVRLNEDAAVGTSVVTVSAVDRD--AHSVITYQITSGNTRNRFSITSQSGGGLVSLALPLDYKLERQYV---LAVTASDGTRQDTAQIVVNVTDANTHRPVFQSSHYTVNVNEDRPAGTTVVLISATDEDTGENARITYFMEDSIPQ--FRIDADTGAVTTQAELDYEDQVSYTLAITARDNG--IPQKSDTTYLEILVNDVNDNAPQFLRDSYQGSVYEDVPPFTSVLQISATDRD 843 HSP 2 Score: 226.483 bits (576), Expect = 1.451e-59 Identity = 195/646 (30.19%), Postives = 311/646 (48.14%), Query Frame = 3
Query: 207 IGGAK---TNRLPQFSQEKRAKSINEEQPVGTFI--LRSTATDY-EGDEIVYSIEG----DTNGYFQIDPKNGDLKTARIIDKESLDNNVISFKIVAAEGRNPSQKSYQKVXXXXXXXXXXPPVFTPESTDKVVNLTENLSGSTFVTQIRAVDKDKSTSGILFYTI---AKGNEAKYFKMNLYNGKITTTKELDYEAVKSFKLEVIAMDGRPKSKGVHKVRTNVYINVLDEDDNGAKF-DSNYSKPIIEGEYTGQKLLRVHAEDQDKGINSPIIYRIEPASNPDNIFSINKDGYIFVNGIIDRERTPVYNLELRAEEEEDSHFNPLHRPAKATLTVTVEDTNDNPPIFTQHNFLGHVTEHESPGTRVATVKAVDRDEGEHAKFTYRLEGKDSEM-FRINE-EGDIFVNGDTDREKKYLYRFYAIATQAGQP--EAKTQVDIIVHDKNDHKPVFKKKIYLSSVPENSPLNTTIVKVEAEDRDENLNGKIRYSIEPHADDLCFHIDPKK--GVISLRCQVDREYKNRYDFLVTAADQAENLPRSSQVRVQVDIEDVNDNFPVFTKTEYFKSINYDESIGSTILHVKATDKDDSDGNNFGKVQYRIVNSDSMSREKFAIKRDTGAVIVGSHLT-DTSGTFKLEIEAFDN 2081
+GG + N PQF ++ E QP GT + LR+ D E + Y+++ +N +F +DP G + TA +D+E+ +V F++ A + P + + + I++ D ND+ PVF E + +L ENL V +RA D D + + Y + + G+ ++ F+++ +G I T +D E V+S++L V A D + + G V+++V D++DN +F + Y + E G +LRV A D+DKG N+ + Y I + + + G + V +D E T Y L +RA +D PL +TV V D NDN PIF F V E G V V+A+D D G++A+ YRL G + F IN G I V + DRE+ Y F A G P A V + V D ND+ P F + Y + E++ + T++V V A DRD + I Y I F I + G++SL +D + + +Y VTA+D R ++ V++ D N + PVF + Y ++N D G+T++ + ATD+D + ++ Y + DS+ +F I DTGAV + L + ++ L I A DN
Sbjct: 167 LGGRRKRNVNTAPQFQPPSYQATVPENQPAGTPVASLRAIDPDEGEAGRLEYTMDALFDSRSNQFFSLDPVTGAVTTAEELDRETKSTHV--FRVTAQDHGMPRRSALATLTILVTDTNDHDPVF--EQQEYKESLRENLEVGYEVLTVRATDGDAPPNANILYRLLEGSGGSPSEVFEIDPRSGVIRTRGPVDREEVESYQLTVEASD-QGRDPGPRSTTAAVFLSVEDDNDNAPQFSEKRYVVQVREDVTPGAPVLRVTASDRDKGSNAVVHYSIMSGNARGQFYLDAQTGALDVVSPLDYETTKEYTLRVRA---QDGGRPPLSN-VSGLVTVQVLDINDNAPIFVSTPFQATVLESVPLGYLVLHVQAIDADAGDNARLEYRLAGVGHDFPFTINNGTGWISVAAELDREEVDFYSFGVEARDHGTPALTASASVSVTVLDVNDNNPTFTQPEYTVRLNEDAAVGTSVVTVSAVDRDA--HSVITYQITSGNTRNRFSITSQSGGGLVSLALPLDYKLERQYVLAVTASDGT----RQDTAQIVVNVTDANTHRPVFQSSHYTVNVNEDRPAGTTVVLISATDEDTGEN---ARITYFM--EDSIP--QFRIDADTGAVTTQAELDYEDQVSYTLAITARDN 790 HSP 3 Score: 169.474 bits (428), Expect = 4.761e-42 Identity = 171/584 (29.28%), Postives = 265/584 (45.38%), Query Frame = 3
Query: 234 PQFSQEKRAKSINEEQPVGTFILRSTATDYE-GD--EIVYSIEGDTNGY-FQIDPKNGDLKTARIIDKESLDNNVISFKIVAAEGRNPSQKSYQKVXXXXXXXXXXPPVFT-PESTDKVVNLTENLSGSTFVTQIRAVDKDKSTSGILFYTIAKGNEAKYFKMNLYNGK--ITTTKELDYEAVKSFKLEVIAMDGRPKSKGVHKVRTNVYINVLDEDDNGAKF-DSNYSKPIIEGEYTGQKLLRVHAEDQDKGINSPIIYRIEPASNPDNI--FSINKD-GYIFVNGIIDRERTPVYNLELRAEEEEDSHFNPLHRPAKAT-LTVTVEDTNDNPPIFTQHNFLGHVTEHESPGTRVATVKAVDRDEGEHAK--FTYRLEGKDSEMFRI-NEEGDIFVNGDTDREKKYLYRFYAIATQAGQPEAKT--QVDIIVHDKNDHKPVFKKKIYLSSVPENSPLNTTIVKVEAEDRDENLNGKIRYSIEPHADDLCFHIDPKKGVISLRCQVDREYKNRYDFLVTAADQAENLPRSSQVRVQVDIEDVNDNFPVFTKTEYFKS---INYDESI-GSTILHVKATDKDDSD 1922
P F ++ E P+G +L A D + GD + Y + G + + F I+ G + A +D+E +D SF + A + P+ + V + + D+NDN P FT PE T V L E+ + T V + AVD+D + ++ Y I GN F + +G ++ LDY+ + + L V A DG + + +NV D + + F S+Y+ + E G ++ + A D+D G N+ I Y +E D+I F I+ D G + +D E Y L + A + N + + + T L + V D NDN P F + ++ G V E P T V + A DRD G + + +T++ F + + G + DRE Y A A G P A+T +V + V D ND+ PVF++ + V ENSP+ + +V A D DE N +I Y I F +D G L VD +Y++R ++++ QA + P S+ V V + D NDN PV E + N S G I V A D D SD
Sbjct: 503 PIFVSTPFQATVLESVPLGYLVLHVQAIDADAGDNARLEYRLAGVGHDFPFTINNGTGWISVAAELDREEVD--FYSFGVEARDHGTPALTASASVSVTVLDVNDNNPTFTQPEYT---VRLNEDAAVGTSVVTVSAVDRDAHS--VITYQITSGNTRNRFSITSQSGGGLVSLALPLDYKLERQYVLAVTASDGTRQDTA------QIVVNVTDANTHRPVFQSSHYTVNVNEDRPAGTTVVLISATDEDTGENARITYFME-----DSIPQFRIDADTGAVTTQAELDYEDQVSYTLAITARD------NGIPQKSDTTYLEILVNDVNDNAPQFLRDSYQGSVYEDVPPFTSVLQISATDRDSGLNGRVFYTFQGGDDGDGDFIVESTSGIVRTLRRLDRENVAQYVLRAYAVDKGMPPARTPMEVTVTVLDVNDNPPVFEQDEFDVFVEENSPIGLAVARVTATDPDEGTNAQIMYQIVEGNIPEVFQLDIFSG--ELTALVDLDYEDRPEYVLVI--QATSAPLVSRATVHVRLLDRNDNPPVLGNFEILFNNYVTNRSSSFPGGAIGRVPAHDPDISD 1058 The following BLAST results are available for this feature:
BLAST of TCONS_00005947 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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