TCONS_00005942 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005942
Unique NameTCONS_00005942
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length368

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005942 ID=TCONS_00005942|Name=TCONS_00005942|organism=Clytia hemisphaerica|type=transcript|length=368bp
ATTAGAAAAACCGCGGGGTTTCGTTTTCGATTTCTCCATTTCTCTTGAGA
TCACGAAGAAAAGACACGAGAGGGAAAGaagttaattcattgttttaATT
GTTGCCAAGGTTCTGGGGCTCAGGATAGTGCTGGTCAATCAAGGGGAGCT
CAACCACCTGGAAGTGTTAGCCAAAACAATAATAACCACCCTCCAAAGCA
AGAAGTTTCTGAATGCAAAGAGGAACCAGTTCAACAAGGAATTGATGAAT
CTAAAGAACAACccattaaaataattaaaacagTCAAAGCACCTGAGGCA
AAAGCAGAGGAAGTCAAGTTATCTTTTGAAGAAGTTGTAGCTTTGAAGCC
AACTTCCCCTGATGAGAT
Run BLAST on NCBI

transcript from alignment at sc0000061:686987..691272-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005942 ID=TCONS_00005942|Name=TCONS_00005942|organism=Clytia hemisphaerica|type=transcript|length=4286bp|location=Sequence derived from alignment at sc0000061:686987..691272- (Clytia hemisphaerica)
ATTAGAAAAACCGCGGGGTTTCGTTTTCGATTTCTCCATTTCTCTTGAGA
TCACGAAGAAAAGACACGAGAGGGAAAGAAGTTAATTCATTGTTTTAATT
GTTGCCAAGGTAAACGTTTTATTCCCTTTCAATATTTAATTTGTGATATA
GTTCTACTTTTTCCTAGATTTTCTGAGATTACTCTTTTTGTGTTAATTAT
AAAATATGATAGGATAGGAAGTATGCATAAAATCTTTAAAGATGGAAAGG
TAAAGGAAGAGGAGAATAATGAGACAAAAAAAGAGGAGAGGCAGGATGAC
TGTGTGAAAATGATTAGATGGAAAGAGATCCAAATTAATGAAATGTTTTA
ATGTATTATGGTAGCTTTGTTTTGCTATCAACATCATTAAATTTGTTATG
CTTGGTTATGCTTTTAAACTAAAAAAAAGCAAGAGAACCTCCTAAAATGT
ATAAAATATTGGCATATATACACCTTTCCTGTAATTCCAACTTTCCAGAA
ATGGCCTGAGTTCATAGCTGTCAACTTCGCCTCACAAAAATGCGTGAGAG
CTCCAAGTCAGAAAAATTTTTCAAAATCGGAAAATCGGGGAAATTTTCTC
GTAAAATCCGATTTTATTGGAAATTTTTTTCGGGAAATTGGGGAATTTTT
CGTTCCGATCTTTCAAAATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGGAAAATTTTTGGAAATGCGGGAGATGCGGGAGAA
AATCCCAAAAATGCGGGAGATTTGGCAGAATTTTCTTCACGCGGGAGAAA
TCATTGACATGCGGGAGTCTCCCGCTCAATGCGGGAGAGTTGACAGCTAT
GTGAGTTGTGTCTAAAAAGACACGGCTTTCTGTGCAATTTTGAGCTCGAT
ATTTTGTAAAAAAATTGCCGTANAAAGTTTGAGCAGATGAGTATCCCAGT
TAAGATTTTCATCAATTATAACACCAAGATATTTAGCATGATGGGAAGGT
TTGATTTGCTGTCCATTTAATCTGAAGTTTAAATGTTTTGTGATTTTTGA
NCTAATAGTCAAAGATCAAAGAAATTTAACGTCATCTTAAATTGCAATTG
ATAGCAAGTTGTTGGCCTTTCAAAGTTTGTAAATAAAATATAAGTGGCAG
GTTTTATGAGCTAAATCACCACCCTGCCGACGCACCGGCGGACTGTCCGG
TGTATTTGTCCGGTGGCAAAAAGTATCCTTTCGCTACACCGGACGCAATA
AGTCCGGTGTCAGTCCGGTGTTGCATACAGGGAATTTTGGACGCCGGACA
TTTATGAAACAAAAAATTAAGAAACACCGGACGCAACAGACTGGTCATGT
CCGGTGTTTTGATTGTCCGGTGGGAAAAAATATCCTTCTCTGACACCGGA
CATCCGACTTCCTTAAGTCCGGTGTAGAAATTGTCCTGTGGTAAAAAAAA
TTTCATTTTACACCAGACTTTTGCATGTCCGGTGTTCGTTAAGTCCGGTG
CGTCGGTAGGGTCCTGCTAAATCTTGGTACCATTTTCAACTTTCCCCCAA
CTTGCATTGCCTTCCTCTTGACAATGAAGAAAAAGAAATTTGCGACATCT
CGACTTGTTGAAGCGCATGACGTCAAATTACACGCTCATAACATAATTTG
TCCATTATCTTGGAGCTGTGCGCGGTTTTGGGGCCCGGCGCTCTATGATT
CTCCAATCAGTTAGTGGAAGTACCTCAATTTTAAGCATATTCAATTCAAA
GTTCACAATAAGGACTTTCTTTTTATCATGGAAACCAAAGGAGTGAGAAA
AAGTCATAAAATTAAAAGTCAGCGCTCCGTGGTTGTGACATACTTTAAGG
GGTATAAGCTTTGGCGAGGAGGACTTTCGTGAATTCGGCAAAATTTTTCG
TTTTCGTTCTCCAATTTTTACATGAAGGTTACGGGATTAGAAGTGTGGAC
CAATTTTACTTTTGTTTTCAGTGGTTTTATTATATTTCAAGCCAACATCT
TAGCAACAGGGTACTCACCCATAGTTACAGGGATTTGTGCAAAAAACCAA
AGGGCTGGACAAAATGTTGGTTTGCCGTCACCAGGCCTTATATTTTGGGT
TAACAGTTTTTTTGACGTATTCAATTTTTTAAGAGTCAAACTTTCCCTTC
AGAACGCCACGCGTCAAGCTGGTAGTTTATAATTAGAGAAAAACTTAATG
TTCTATCTGAAAATGAAAATCAACAGTGTTTACAAGTTTTGATTTCATTG
TTTGAAGTTAAAAAAAAAACAAGTCTGCTTTAAAATGGCAATAAAACTTT
TTTGGGTGGGCAGGGTTCAAGGTAGGGTTGGTCGGGTGACGGCAAATCAA
CATTCCAGACTAGCTTCTTTTATTCAATGATTTTTTACTGGACTAGAAAG
ATTTTCAGAGACTATTATTTATTTCAAGGTTATAATTTAGTCTGTTGTCT
ACTCAGTATTGTAGTTAATGTTTCTGTCTTGCCAAAGACCTAATCCTCCT
TTTTTGTGTTTTAATTTTCATCACTTTTTTGTACTGGATTTAGTACTTAG
GCTGTATATTATTTGGAACATATAACATTATCTTTAAAAATGAATAAAAA
GATAATAAGAATCTCCTTTGGTACATTCAAGGTCACTTTAAAAAAATGTC
ACTATGAACAATGGGATCCATTGTTGCTAAAAAGAAGAAGAAAGAAACTA
GTAAGATCATGCGTCTTGATTATTTTATACATCAAAGTTTATTATTTTTC
CAATTCAGTTGAATTTCAAACACCCAAATTTGGAAAAAATAATTCACTTC
TAGAACCTTAATAATAAAAGTACTGCAAATTTATGTACTGTATTGTTTTT
TCTTGGTCAAACCAACGAACAGAAAAATTGAGAAAACATTTTAGAGGATC
ATATGATGTGTCATATTTTTTTGTACAAGAAACCTTCCTTACCAGTTTAC
TAAGACCAGTAAAAGCACAAAGATAATAAAAGGTTTAACAATAATTATTA
TTACTTGATATTTTTAGGTTCTGGGGCTCAGGATAGTGCTGGTCAATCAA
GGGGAGCTCAACCACCTGGAAGTGTTAGCCAAAACAATAATAACCACCCT
CCAAAGCAAGAAGTTTCTGAATGCAAAGAGGAACCAGTTCAACAAGGAAT
TGATGAATCTAAAGAACAACCCATTAAAATAATTAAAACAGTCAAAGCAC
CTGAGTAAGTTGATTTCCAAAAAAAATTTATCAAACTTTAATAAAGCACA
AGGAGTATGTATTTTATTGGAAACTTTTTAAGACTTTTGCCCTCAAGTAG
AATTTGTATGTATTTAGTCACTTTCAACAAAGAAACAATTAAACAATACT
AGGAAATATGGATAGTCTTATTTGTTGATACCCCACAATAAATAATATCA
TGGCTTCAAAAATAAGGAAACAATTTGTACGATTTTTGTTGTTTTGATAA
TTGCACTTAAAATTAACATCATGATAGATATATAAACTGTTTTATTTTTT
ATTTTTCGAAGTTATAAATTTCATTTTCAATTTTCAATTTATTTAATTTT
GAATGATGAAAAAGGATCAAGTTCTGCTTTCTTTGAATTTAACGCTTTTT
TTATTCATATCTGTTTGTATCTGTCTAAATCTGCACAAAAAATATTAAGG
TTTGTTTCCAAGAAACGGGGCTTGTATGAGTGTAATATCTAAAGGTTTTA
TAGAAATGGAGTTTTTCATGCAAAGATGTGAATTTTTATGAATTTCTACA
GGATGGTATAGGTTCTTGAAAGTCTTGAAAACTAGACAACCTGTTTGCAT
TTTTACTTTGCTATGACTCAAATTATTTCCCTTTTGTAAAGAAAAAACTA
CAAAATTAATTTTCGAAATGCATTGTCAAATTTTAAATCGTTGGTTACTT
ATATTCTCAGGAACACCGCAAACTCTCTCATAAGAGTATATTTTTAAAAA
CCTTGAAAAAGATCCAGGATAAAAATCTTAAAAATATGTAAAAATCCTTG
GGGACATTGGAAGTGGGTATAAAAAGCTCTATAAAAACCATGTTTCTTTG
TTTTTCTTTTACAGGGCAAAAGCAGAGGAAGTCAAGTTATCTTTTGAAGA
AGTTGTAGCTTTGAAGCCAACTTCCCCTGATGAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003378XLOC_003378Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005942-exon-sc0000061-1575043694:691164..691272TCONS_00005942-exon-sc0000061-1575043694:691164..691272Clytia hemisphaericaexon
TCONS_00005942-exon-sc0000061-1575043694:687919..688105TCONS_00005942-exon-sc0000061-1575043694:687919..688105Clytia hemisphaericaexon
TCONS_00005942-exon-sc0000061-1575043694:686987..687058TCONS_00005942-exon-sc0000061-1575043694:686987..687058Clytia hemisphaericaexon
TCONS_00005942-exon-sc0000061-1510915933:691164..691272TCONS_00005942-exon-sc0000061-1510915933:691164..691272Clytia hemisphaericaexon
TCONS_00005942-exon-sc0000061-1510915933:687919..688105TCONS_00005942-exon-sc0000061-1510915933:687919..688105Clytia hemisphaericaexon
TCONS_00005942-exon-sc0000061-1510915933:686987..687058TCONS_00005942-exon-sc0000061-1510915933:686987..687058Clytia hemisphaericaexon
TCONS_00005942-exon-sc0000061-1491911889:691164..691272TCONS_00005942-exon-sc0000061-1491911889:691164..691272Clytia hemisphaericaexon
TCONS_00005942-exon-sc0000061-1491911889:687919..688105TCONS_00005942-exon-sc0000061-1491911889:687919..688105Clytia hemisphaericaexon
TCONS_00005942-exon-sc0000061-1491911889:686987..687058TCONS_00005942-exon-sc0000061-1491911889:686987..687058Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:686987..691272 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.90401	4.18771	6.56972	15.8267	19.4246	21.3537	6.14467	23.6315	2.90457	4.70572	7.22062	1.02488	1.58714	0.693489	1.05523	2.70729	3.85085	1.91788	0	0.648169	3.30434	3.09758	3.32407	1.93102	3.81381	3.65174	0	0.741436	0.0137621	1.01797
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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