TCONS_00005937 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00005937
Unique Name	TCONS_00005937
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	4110

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000061:609256..625381-

transcript sequence

>TCONS_00005937 ID=TCONS_00005937|Name=TCONS_00005937|organism=Clytia hemisphaerica|type=transcript|length=4110bp
atcaaatatttcttgaatctACTAATGTtgcgtttttgttttttagttaA
AACTTTCATGTGTGGAAGCTGAACAaCGTATCAGAGATAAAGAGCGAAAG
GTAGCAGATCTTCAGGAACTTTATATTCACCAACATCATATGCGAGAAGG
TGCAACAAAGTTAATTGAATCATTAGAACACCGTtataatatcaaccaat
cacgtATCGAAGAATGCAGGTTACAACGACAAATTAATGCCGAGAGATTG
CTTTTAATTGAAGAAGAAATATCGAAAATGTCTggttcattgaaattcaa
agtTCTTGGTTTGTACGGGTTTTCAAGGATCTCCCCAGGCGACACTTATG
AATTAACTTTCAAGATCGGAAGTCATCAGAAATGGAAAAGTAAATGCAAA
GTAGAAGTCCATGGTCAACGATGGATCGAGCCTCTCtTTGTCTTTCAAGC
AGACGTCTCCAAGAGCATGACAATAAAGCTTGCAGAGCTTGGAAGTTTTG
GCAAAACGACTGGTATTGGAGAGGCTACTTGTTATGTACAGGAGTTTTTG
AGTCCAGAACCAAAGGTTTTCTTGATTCCAATCAACGCTATTGGTACTAT
GAAAGTGAAACTGGGCGTGGCTTGGAGTGGGTTGGACAAGACAGatcgaa
aatttttatcaagtCAAAAACGAAACCCTGAGATGTCAGATGTTGATTTT
ACAAACGCTGGTGTTGTTAATCTAACATCCTTTGGACGAAACCCACCTAA
ACCGGAAGACAGGAGCCTTATTCAGATACCCAACCTTTTACCGCCCAACA
CACCTTCTACTTCAACGCCCACCTCTTCAAATTCGTCAAGTTCATCAACG
CCCTCATTGGGTGGAAGTGGTGGGCGAACACAATCGTCGCCTCTACCTCG
ACCAAATCGTACATCAAATGTAAGTTTGGACAATGATATACAAACACCGA
ATCAAGGATTGGAAAATGTGCGAAAATCATCAATTCAAGGATCTGAAATG
ACAAGAAAGATGTCAAGCCAAGAAAGACCGGATCGAGAACGTACTGAAAG
TTCACCTTTCCCGAGACCAAAGAGAACACCTGGTAAACATGGCATAGATA
CAANGAACGTACTGAAAGTTCACCTTTCCCGAGACCAAAGAGAACACCTG
GTAAACATGGTATAGATACAACAGACTTAGCAGAAGAATTAGCTGGCTAT
CGTAAAGTTTCAGCAACGGTAGTAGACGCTAAAGCGCAAACATTACCAGC
GCATGCACAAGGAAATAAAACTCCACAAACTGAACCCAGGAAGATTTCTA
ATACTCCCGATAGCACTCAACGGAACGACTCAAATAATAAAACACCATTA
ACAGATAAAACAACGAGACCGAAAAACAATTCAGATACACGGCTTAGTGA
AAGTATCACTGTCACCTCATCTCCGATACCGGCAAATAAGACTCCGCAAC
AGAAAAAACTTTCATCAGCTACAAGTAGCAGTGGTGGGACTTCAATCGAA
CTTTCCATAACAccaacgaaaaaaaattcagttaGTAATATGGCCACCAA
ACAAAACACGTCAATCACAGTTGAAAAATCGCCGGTACcgataaatataa
ataaaaagaaaagcatAGACGAACCTATTAAAAATGAAActccaaaaaca
tcaaaaaacaaTAACGGACATATAAAAACAACCAATGTTGCCAAAGTTGC
ATCTCCGAGTAATACACCAAAGACAAAGCAAAACAGCCAAATAAAAGCGG
ACCGCAAGACGCCGGTATCGTCCGCTCAGAAATCCGGTAGCAAAACACCA
ACTTCAACTAGTAAGAACTTAACCGGGCAACAAAAAACTCCTCAACAAAA
AACTCctcaacataaacaaaatggACAGACGAAAATCTCAGTTGAGAAAA
CACCAACCCCAAAACCAAGACCAAACGGACAAATTAAAAACACGACTGAA
TCATCTAAAAGCAAGTCAAGTAGTCATATAAAAAGTACAGAACAGAAAAC
ACCTAATACTAAAGCTGAAACTCCAAAAGCTTCGTCTACGGGACAGTTAT
TAAAAGAACGAAATAAATCTCCGATCGTCAGCGTCCAGAAAACGCCAAAC
GATACTCGAAAGATAAGCGCTGAAGTTAGGTCATCCAACGATATGCCGGA
TCCGATATACGATAATAAAAAAGATTCATCCTTGGATCATAATAAAAACA
TATTACCTGTTAATCTATCTTGCGAATCTTCGCTTGATCGTTCGGCGGGT
GGTTCTCCAAAAGTCATTAAATCGAAACCGATCGAAGCAAAAAAAGtcaa
tacaaaagaaaaagagtcATCTGTTTTGAAAAGTGAACCTAAAAAGGCTC
CCTCGCCTGTCGTAAAACACAAGCAACATAAACATCTACAAAAGGAAAAT
TCGACACCAGTAACATCTAAAAGTCATACTCCAAACCAACCCTCTCAATT
TGTAACTAGTGGTTCTGTTGCGGTCCGCTCCTCCAATCAAAACACTTCTT
TAGCATCACGTGCTCAAAATATTGACGTCACAAATGATGAGTTGTCACAG
AGTTGGCCTATACAATCGAATAATTGGTTCAAAGAAACATTGAGTCGTCA
ACTACTTGGTTCGAATAACGGAAAAGAAGCTCCACCAGTACCGCGTGGAC
CACCGATTGGTCAGAAACCTCGAAAGACATCGAAACTTGGTCCATTTCAA
GATAGTGAACTCTCTGATAGTAACCTTGCAATCCAAAACTGCTTAAACGT
CTGTCAGCATATTATCACTCAACTCACAGCAAAACCGTTTATCAAAGAAC
TAGCTGAAAATGTCGAAGACGAAATGAAAGTGCTGATCAAAGCTATCGAG
AGTTTCCAAAGCCGTCAAAACCGTCGCCCGTCATTCAGTGAGTCTGTCGT
CATCGCTTTAAGCAGTTTTGATTTCTTGAACAAAGACGAAGAAGACGAGG
ACCCAGGCACACTAAGAGGCCAATCGCCAACTCTTTACATACTACCCATA
CAGTGGAAACGTGTACACAGGGCCTTATTTCATCACTTGTGTGTCCTATT
CGATTTGATTGACgtttttgaaaagaagtacGGGCCGTTGCAACACGTGG
CTAAAGTAACACAAGCGGCAATCGTCCGAAATATCAAAACTATCCGAGAA
TTGAAACGATTGATTTCGGAACCAGAAGAAATCAACCTTCAAACTGTTTG
TGAGAAGTACGTGCAAAGTGAGACACTTGGTAACACATGGGAAGTCAGTG
CGGCTACCGACCAGccATTATTTTGCAACCGAGCTGCCATCAATATGACA
ATGAGTGCTCTGTACAACCACCTCCGAACTAGTACGGAAACAGCCAACAC
TTTGCAAGTACAAGCTAATGAAGTTTGCAGTGCAGCATTAAAGCATTTGA
TGGGTGACGAACAAAGTCTCACAGATCAAGATGTCATCACTGTCTTTGAT
TTCGTTGAATTCTTCAAACGTAAAGTACAGTCTCACAACGTTGCAGAATT
CCTACAGCACGTCAAGATGGAAATTACTGCTTTGAAAGGCTTGGAGGCGA
CTGATGAGCTGGTAGTAAAATCAACGCTTCAACAATATTGGCATATACCA
ATCATCCCATCTTGTATACAAGCTCTCTTTAAACTTCTCTCGCAAGGAAA
AACTACAACCAAAGCAAACACAGTAAATGCACTGAAGCAAGTCCATAAAA
CAACTGCTACATATctGGAAGACATAATAGCGCTTAGTTTGGAGCACAAA
AACACGCCTGTCATTGTGGGTGCATGTTTAGCTGCTGGCGAACTCAGGcT
GAATTCATTTTCGGAGAAGCTGAGATACATTCATGATGTTGGAAACTCTG
TGGTCAAAGATGCTGCAGATTATTCACTCAAACGATTAGGCCATTCTTAC
ATCAAATCGTAAACAAATGTTGATAGTTCATCGGCCATCGACTCCTTAGT
TTCAAGGCCATCGGCTGCGGAGATATGATGGTTGAAATAATGTTCCAGAT
TTGGACAAAGTGAACACTAACTTAAGGTCGGTCTAcgcttgcgcgcgctt
cgatcgcacttcGATCTCGAGCGAAGCTTCcatgctattggtcaaaagaa
aaatgaagca

Run BLAST on NCBI

transcript from alignment at sc0000061:609256..625381-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00005937 ID=TCONS_00005937|Name=TCONS_00005937|organism=Clytia hemisphaerica|type=transcript|length=16126bp|location=Sequence derived from alignment at sc0000061:609256..625381- (Clytia hemisphaerica)
ATCAAATATTTCTTGAATCTACTAATGTTGCGTTTTTGTTTTTTAGTTAA
AACTTTCATGTGTGGAAGCTGAACAGTGAGTAACCCAACCGTTCAATTAT
ACATTTTTTCAGGACGATGCAATATTGTCTATTGCAATATCAGGACATAA
ATACATAATACAATCTCTCACAACCCCGGTGAAACTCTTCCCGCAGTGGG
GATAAAAATTTTACATGGAGTTTACATTTCCCAGCTCAAAAAATCCAGTT
GAATACAATTATTTTTTTCCATTGAAATTCAAGGGGATGAAGTCAAAGTC
AATATTCAGTGAGACTGAAATTGAAGGGTAATTTTTGGCCAAATTTCCCA
GTGGGCCGGGGGTCCCACCGGTTCTGTGACACGAATGTGAAGTAGTTTAG
CTTTGTTTAAGGGCCTATCTCCTTTACTAACACATGTCTTTCTTTAAAAC
TATCTGTGTGACTTCATCATATGTCTTTGTAGGAGGCCCCCCCAGCGGAC
CCTCAATTCACGCAATCACGCAATTTTTTTTCGAAATTCACGCATTCACG
CAAATTTTCCTCGACTTTCACGCAATAACCCGATTTTTCAGAAATCGGAA
AATTTTTCGGGAAAAATCGGGGAAACATTGGATAATCGGGAAAACTGCAT
ATAATCGTTGGGAAAAAGGGAAAATTCACTTATTCACGCACAAGATAGCC
CAGATTCGCGCTTTCACGCAATCAAAAAGTGCATTTTCACGTTCACGCAA
GTTTTTTCAATTCACGCATTCACGCATTTTTTTTTCAATTTTCACGCATT
CACGCAACCGAAAATGCCCATTCACGCAATCACGCAAACCGCTGGGGGGG
CGGCCCCTTGTAGTTTGAGAGTCATTACATAATCATTAAATTCAATTCTG
TTCAATTTTATTTCATAGACGTATCAGAGATAAAGAGCGAAAGGTTTGAC
TTCATGTTTCTTCATACTGTACTCGATGTTTTTTTCAACAATTTTCTTGG
AAATTTGTTTATATATAATTCCTATGACCAGTGAATAGTAGGATTGGACC
CGTAGTTGACAATTTGATCAAGATAAATTAAACAACTAATAATTTCTCTT
AATTGCTGAGTGGGTAGTATTATCGAAATGCTATAATCCTTGTTGCCAAT
ATAAAGCTCTGATAAAATTTGCTCAAAAATTTAACTTGCTACTACTACTC
ACAACTTAGGATTGTACCCATAGTTAACCATGTGATCAAGTATTTATTAT
GTCAACCTCTAGCCCTTATGTTTTTCCTAGGCCGAAGAAATTGGCAATTA
AAAGAAATTTTACCAAAACTTTAAAGTGCCAAGGAGTGATTGTTGCATTT
GGATAATACTGCCTACTATACACAAGAATTTACATAATATTTTTAGGTAG
CAGATCTTCAGGAACTTTATATTCACCAACATCATATGCGAGAAGGTAAA
ACTATTAGATGAAACTATCTTACATAGAAAAAAGCTACAATTAGGTACCT
TAAAGAGCAGTCCTTATTTTAGCTACACACATCTCCAATTTTTCTGATTT
TTACTCTGCAAAGTCTTCATGACAAGCTTAACATTGAGACGAGATGATAA
TCCGAAATTTGATTGTTCTTAAGTTCTGTTCTTAGTTATTTCTGTTGCAA
AGTTGAGCTTTGTGTTCTTATAAAAAAGTATAACGGCCACCTAACGTTTT
ATGGACGTGTTCGTTGTATATTAAATGAACATTGTTAGGACGCTTTGTAG
TGTTTGAGTACGTTGCTTATGCTCCATGTTCTCCAGGTGCAACAAAGTTA
ATTGAATCATTAGAACACCGTTATAATATCAACCAATCACGTATCGAAGA
ATGCAGGTTACAACGACAAATTAATGCCGAGGTACAATACATTGTGTCCC
AAATTGAAGTTGACAGTTCTCGACTAAAAAAAAACAAAAAATCCTCTTTC
TTTAGAAGACTGAAAGAACGCCCTTCCTCAAATTCAATCGTTCTATATGT
AATATGTTTTTATAATTTAGTATGTAATCGAGGCCTTTCAATTGTTCTCA
ACTTGTTCTTAATGAGATTCGACCATCCTGTATTTGAAATGCAGACTTTT
CAAGTGTTCAATGTTTAAAACCTTACTGACATTAACCACCAGGCCATTCC
TACTACAAGCTATAAAATTCACCTAAACTTGATATACTTTTCGATAATTT
TTTAGAGATTGCTTTTAATTGAAGAAGAAATATCGAAAATGTCTGGTTCA
TTGAAATTCAAAGTTCTTGGTAAGTTTCTTCTATTTTTCAACCCATCTAA
AATTTCATGGAATCCCAATTGGGCAATAATGTCAATAGAATGTCCTTCTG
AACGTTAACAACGTCCAAGTAACGTTAGATGATCGTAAAATAAAGATTTA
TGCTAGTTGGAATTCTCTCACAGTCTTTCCTTTCGGTTTTCTTTTAAAAT
GTCCCTATCTTTGAGACTGTTAAATTACTGTTACTTTTAGGACTTTATGT
TCGAGTTAAAATATTCGTACCCTATCTTACACTTAGGAATATTGCACTCT
CTAGGTTTTCCAGGAGTCGCATACTTTGAAGACTTTCTTCTACTTCTTTT
CTTACCTCAAAATAAATCACTGTATTTATAAACCATATCATTTCTTTTAG
GTTTGTACGGGTTTTCAAGGATCTCCCCAGGCGACACTTATGAAGTAAGC
AAATTTTATTATTTATGTTTGAGAAATCCGAGATAACTGATCTAAATGAT
GTTGATATGCGTAGAAGCTCCAAAAGGGAACTCGTGTGTTGCTCGCGTTT
AGTAGCGAGTTTATATATTTGTATTAGCGAGATTATGTATCTGAAATTCT
CTACGGCTACGGTTAAAGTGGTGAGGGAATAATGGCGAGTAAAGCAAGTA
ATGGCGGGTGAAAGAAAGTTCAATATCTGACGTACGGCATTATATCGGCT
TTGCTTATATGGAGTTTCAGTGTTTTTCCCGTACAGAGTAAAGTAGACAA
CGACATGTCGCCTTTGGTGATGACCTGCATGGGTAGACCCGCAACCGTAG
CCATAGAATATCTCCGATACATAATCTCTCTATTTTTCAGCGTCGGAGAC
GGCTAACTTCTAATTTGCCTAGATACCGATTGACTGAGTACGACGTTAAA
TCAGCACTTTAACCTTCCTCGATTTTGCGGGTCAAAACTGCGGGTTATTC
CAAATCGTTTCGGTCATTCTACCGTCCTCAAAAGTGAAAATACATAACCT
CGCCAGTCTCTTCAGGATAGATGTATCTCTGCAATGTCTTCGGACATTAC
ATCACTTGTACAACAGCTGATTGGTTGCAAAGTAACGTATTGTACAGAGA
AGAAACAAGAAAAGATAAACATAATTTCTTGAAGTCATTGCAATGGAGCA
TCATTATTTAAAATTCCATTTATCCATTAACAAATATCGCTCATTTTGTT
TATAGTTAACTTTCAAGATCGGAAGTCATCAGAAATGGAAAAGTAAATGC
AAAGTAGAAGTCCATGGTCAACGATGGATCGAGCCTCTCGTAAGTTGTTT
CCCCCTTTTANTTGTTTATAGTTAACTTTCAAGATCGGAAGTCATCAGAA
ATGGAAAAGTAAATGCAAAGTAGAAGTCCATGGTCAACGATGGATCGAGC
CTCTCGTAAGTTGTTTTCCCCTTTTAATCCATCGGTATCCTAAAGTGAAT
GGGATATGTACATAGATTTATAAAGCCCGAAGGGCCAGATGTCGTGCTTT
AAGCCATTGCAGGTAAAAAAAGTGAATATCGCAAGAAATATAGTTGCTAT
TGTTTTCGAAAAGCCGCAAAGCTTCTGATTGGTCAAGTGCTGGAATTCTA
TTGTAATGTCACGTGACTTATTTAGGATTTCCTACCTAACCACGGCACAC
TTTTCAGCAAAAGTACGCCATCTAGCCCTTCGGACTTTGTAAATCTATGG
ATATGTACCTTTTTTTGACGTCAATTTGATAAATTTTTTTTCAAGCTTCC
AATATTTTGTTGACTTATTGTCGTGTCGCTTGCAAAGAGCTTCCATGTAG
ATAGTTAGGCGGGCACTTGGGCAAGTAACTCGGCTATCTTCTAAACGCGC
CATGCCGGCCAAGAAATGAAGGTTTGTAATTATCTGATTTTCCGATTGTG
TTAGGCGGCCGCCCACGCTTAAGCTCTAAAGATAAAATTTATCCAGTTGT
TCAGTTGTTGTATAGAACTTGATTGCTGTAGTTTCCCTTAAAACTTTTGT
TTCTTTTATTTTGTAGTTTGTCTTTCAAGCAGACGTCTCCAAGAGCATGA
CAATAAAGGTAGTAAAACTTTTTTGCCCTCGTGCGCTCGCCTTTTTGTAC
CTCAAGGGAAGAAATTTTCGCGGAACAAGTTTTCGCTGAATTTAATTTCG
CGGTTTTTCGACAAATTCGCGAAATTAAATTCCGGGAAACACGAAGATTC
TCATGATTTAAAAGATCAGCTATAAAATTGGTCGTTTAGGGCAAACTAGG
CCATATTTTAAACAAAAATCCTCTCAACCGCGAAACTAAGCTCCGCGAAA
GGTATAAGGGTATAAGATTTAGGTTCTGTCTCGTTGAAAAGATATTTTTA
AGTATACAGTATCACATAAGGAAAATGAAGAAGAAAAATAATCGACTTTT
TTGAATTGTGCTACTATAACATTATCAGACCAGTAAATCTTAGAGCACTA
CAATTAAAAATGCCCATTTAGCCCAAAAGTGACAGTCTATTTTGGTATTC
ATGATTTTTACTATTTCTCCAGCTTGCAGAGCTTGGAAGTTTTGGCAAAA
CGACTGGTATTGGAGAGGCTACTTGTTATGTACAGGAGTTTTTGAGTCCA
GAACCAAAGGTAGGGCTTTTCTTAGCCTGAATATTATATTTGTCTAGAGT
CATTGGTATTTTATGTGGTTTAATTTCGATGTAGATCTCAAGTTCTTTTT
CCAAACTGAAACCGAACGTATTTTTAATGCCCATATTCAATTTTACGGGC
GTTAGATTGTTTTGTTTTAAAATGGGGGTGTCGGCTTTGTTACTTTTCTT
CTCAAATTTACCGTAATGAAATGAAAAATCTCGAATCCCCTTTATTTCCA
GTTCAGCTTATAAATCTCTACTTTCGGACCATAGTGTACCGTAAGTTGGT
CTAATATCGACATCCCACGTCTAATTCCGACACCCTTCTTTATAGACAGG
AATAATATGAAAGATTGAATCACTGATTGAAAAAGGATTATTCCTCTCTG
ACCACTAAGCAAAGAAAAACAGTTTCAACCTTTCTATCAATTTCAGCTGA
TAAAAAGGGTGTCGGAATTAGAGGAGGGATGTCGACATTAGACCAAGTAA
CGGTACCTTACGTATAACGCAGCGAACAAAAGGCAATGCATTTGAATTTC
TAACCGTAGATATTTGATCTGTTTATAGACAAAATGACCAAGGATCAAAG
AGTTTTTCTATTGTTGCCTATTGAGTGTTCGTGTTACAAGCATTAAAAAC
ACTAAAAGTTTTCTTTCTTTTACATTTTCAGGTTTTCTTGATTCCAATCA
ACGCTATTGGTACTATGAAAGTGAAACTGGGCGTGGCTTGGAGGTGAGTT
GTTATTTTTAATATCATATACGTTTTTTTATAAAAACAAACTATGGATGA
ACATAATAAGGCTTCGATGACTAAAATGTTAAGAACAAGCTAAGAACAAT
TTAAGACTTTGCGGACTCAGTACTGGACAAAAGTACTCAGAAAATGGTGG
AAATAAGAACATTTTTAGGCTTAAAAGTCAAGTTAAAATTGATAACCGTT
ATTTTCTTCTTTTCTATCCAGTGGGTTGGACAAGACAGATCGAAAATTTT
TATCAAGTCAAAAACGAAACCCTGAGATGTCAGATGTTGATTTTACAAAC
GCTGGTGTTGTTAATCTAACATCCTTTGGACGAAACCCACCTAAGTAAGT
GTGACTGATTTCCCAACAAGAAATAATAATTAAACAGAAATTAAGTAATT
AAACAAGACATTCTATAATAACCCAGTCGCTTTCGTTTTCAGGCAAAAAA
GCGGTTTTGAATGAATCGGCTTAAAAAAAGGTCACATTCGCAGCTTCCCT
TTAGATCAGAAAGTGTTTCTGGTAAAACGGATGATCTGTTAACCATTATT
CCATAAAGCCGACAAAACTGATTAACGAGCTACCTTGTTCCTTTTGCCTT
GCTTTTAACCATAAGACGTTTCCTACTAAGTTTCGTTCGTATGTTTTTTT
TACTAGAGAATTTCTCACAATAATTGAATTCTCTTTTATTCATAGACCGG
AAGACAGGAGCCTTATTCAGATACCCAACCTTTTACCGCCCAACACACCT
TCTACTTCAACGCCCACCTCTTCAAATTCGTCAAGTTCATCAACGCCCTC
ATTGGGTGGAAGTGGTGGGCGAACACAATCGTCGCCTCTACCTCGACCAA
ATCGTACATCAAATGTAAGTTTGGACAATGATATACAAACACCGAATCAA
GGATTGGAAAATGTGCGAAAATCATCAATTCAAGGATCTGAAATGACAAG
AAAGATGTCAAGCCAAGAAAGACCGGATCGAGAACGTACTGAAAGTTCAC
CTTTCCCGAGACCAAAGAGAACACCTGGTAAACATGGCATAGATACAANG
AACGTACTGAAAGTTCACCTTTCCCGAGACCAAAGAGAACACCTGGTAAA
CATGGTATAGATACAACAGACTTAGCAGAAGAATTAGCTGGCTATCGTAA
AGTTTCAGCAACGGTAGTAGACGCTAAAGCGCAAACATTACCAGCGCATG
CACAAGGAAATAAAACTCCACAAACTGAACCCAGGAAGATTTCTAATACT
CCCGATAGCACTCAACGGAACGACTCAAATAATAAAACACCATTAACAGA
TAAAACAACGAGACCGAAAAACAATTCAGATACACGGCTTAGTGAAAGTA
TCACTGTCACCTCATCTCCGATACCGGCAAATAAGACTCCGCAACAGAAA
AAACTTTCATCAGCTACAAGTAGCAGTGGTGGGACTTCAATCGAACTTTC
CATAACACCAACGAAAAAAAATTCAGTTAGTAATATGGCCACCAAACAAA
ACACGTCAATCACAGTTGAAAAATCGCCGGTACCGATAAATATAAATAAA
AAGAAAAGCATAGACGAACCTATTAAAAATGAAACTCCAAAAACATCAAA
AAACAATAACGGACATATAAAAACAACCAATGTTGCCAAAGTTGCATCTC
CGAGTAATACACCAAAGACAAAGCAAAACAGCCAAATAAAAGCGGACCGC
AAGACGCCGGTATCGTCCGCTCAGAAATCCGGTAGCAAAACACCAACTTC
AACTAGTAAGAACTTAACCGGGCAACAAAAAACTCCTCAACAAAAAACTC
CTCAACATAAACAAAATGGACAGACGAAAATCTCAGTTGAGAAAACACCA
ACCCCAAAACCAAGACCAAACGGACAAATTAAAAACACGACTGAATCATC
TAAAAGCAAGTCAAGTAGTCATATAAAAAGTACAGAACAGAAAACACCTA
ATACTAAAGCTGAAACTCCAAAAGCTTCGTCTACGGGACAGTTATTAAAA
GAACGAAATAAATCTCCGATCGTCAGCGTCCAGAAAACGCCAAACGATAC
TCGAAAGATAAGCGCTGAAGTTAGGTCATCCAACGATATGCCGGATCCGA
TATACGATAATAAAAAAGATTCATCCTTGGATCATAATAAAAACATATTA
CCTGTTAATCTATCTTGCGAATCTTCGCTTGATCGTTCGGCGGGTGGTTC
TCCAAAAGTCATTAAATCGAAACCGATCGAAGCAAAAAAAGTCAATACAA
AAGAAAAAGAGTCATCTGTTTTGAAAAGTGAACCTAAAAAGGCTCCCTCG
CCTGTCGTAAAACACAAGCAACATAAACATCTACAAAAGGAAAATTCGAC
ACCAGTAACATCTAAAAGTCATACTCCAAACCAACCCTCTCAATTTGTAA
CTAGTGGTTCTGTTGCGGTCCGCTCCTCCAATCAAAACACTTCTTTAGCA
TCACGTGCTCAAAATATTGACGTCACAAATGATGAGTTGTCACAGAGTTG
GCCTATACAATCGAATAATTGGTTCAAAGAAACATTGAGTCGTCAACTAC
TTGGTTCGAATAACGGAAAAGAAGCTCCACCAGTACCGGTATGATTTGCT
TTATCTGTAAGCTATCAAGTACTTTAATGGGATAAATTTTCGTGGCTATT
AAATTTCGTGGTTATGCTCATCCGCAAAATTTTAATATTTTAAGGGGGTT
TCATCTCGCGGATGACATCCAAACCCGAGAAATCCACGAAATTCAATCCC
CGCGAAAATCTACCCCATTAAAGTAGCGTCATTGAGTTTGAAGCTGAAGG
CTAAATGCGAATATTCAACCTTTCCCAGGCAAACTAAACTGACACTTTAA
TAGACTGGAGTCGTTTATGAGCCGTGCAATACAGTAATGGAACTGATAGT
AAACGAGATAGTACCAGTGTGTATGATGACTACTATTTGTCCATTCCAGC
CGGCACACAACGTCAAAATAACGTCCATGTGATATTCATAACGTCCAAAT
AACGTTATTTGAACGTTAAAACAACATTGTGTGCCAGCTGGGATTCCATT
ATTTTTTGCTTATTCTCTTCTTTGTTTGAATTGCTGAATTGGCATGCTAG
ACTAAGTTCCTTATGGATTAAATTACAGAGATTACAAAATGTATCTTTTT
TAGCGTGGACCACCGATTGGTCAGAAACCTCGAAAGACATCGAAACTTGG
TCCATTTCAAGATAGTGAACTCTCTGATAGTAACCTTGCAATCCAAAACT
GCTTAAACGTCTGTCAGCATATTATCACTCAACTCACAGCAAAACCGTGT
AAGTTTTTAAGCTATGTATGTTAACCAGGTTGCTAGCCTATTTCTATTTC
TTTTTCTATTTGATTAAGTTACAGGAAGCTCTGAGACCCATTTTCGCATA
TATAGACGTTTTCAATGAGCGCCCCGTCAGAACCTTTGCCCCTGGATGGG
GGGCATATGGGCAAAATTGGGTACGCGACGTGCCGCTGGTCAGGGTCCCT
TTTTTAGGTCCCAAATCTACTAATTTTCAAGATGTGTATCTGACAGGGTC
CACTTTAGGTTATTTGGACAATTTTGTAGGGTAAAAATTAGAAAAAATTT
CAGTTTTTCGTCTACTTTTAGTTATTTTTGCCACTTGTTAGGGTGAAAAT
TGGAAACATTTTTGATTTTTCGTTCTGACAGGGTCACTATTTTACCAAAA
TTTCTTATCTGACAGGGTCAACTTTTCGAACTCCAGCGGCACGTCCCCGT
CGGCCGTCAAGGTCAGTGCCCCCTGGTCTTTGCCCAATTACCCAATTCCC
CTCACATGGCATGGGTGAACCTGGGAGATGGTTCGTTCACTTGCCAAGCG
AACCTCTGAGAGTGGGAATCAAGCCTCAGCCTGAGCACAAACCAAGGTCA
ACGACCACTATACCACAGCGCTCTCGCTTGAATTGCTGTCTGACTCATTA
TTAGCGAGCACCTCCACCAAAAAACGGGATTTTTCATTCCATTCCATTTA
ATTGCGTTAAAAGACGCGGGTGACGTCTAGTATAGGCTAACTCATTATAA
GGTTGTGTCTTCGAGTTGTCTAGCTGATCTTCTTATTTTTTCCAGTTATC
AAAGAACTAGCTGAAAATGTCGAAGACGAAATGAAAGTGCTGATCAAAGC
TATCGAGGTAATTCTTCCTTTTTTTGTCCTTTTGATTCAGTTCATAAATG
TTCTTTTTATATTTAGCTTAGATTAGGCTGTGCGCATGTCTGAAATAGAC
TTCTCAGTGAGTGCGACTGACAATTCCCATATTAATAACACGCATGCATG
ATTTATCGCTTTTTAAGCCAAAAGTCATTAATCTTCGCAATAAAGAAAGA
GGAATCAAGATTTTGGAATTGGAAAATTATCTACCTAGGTCGGGGCTTTG
GATGGCGAGAAAGTTGTCGTTTTTTATGAAATTTGTCGTTCTTGTCAAAT
GTAGGAATTGTCACGTAGAAGCCCTCGCTCCCTTCTGTCTTCACTAAATT
ACCTTTGGATTAACCCAGTTAGCACACACTGTGCAAAATCAGCGCACATA
TCGTCAATAACAAACGCATCATTGAGTTTAAAGTCTAGTAGACAACTTCG
AACCAACTTCCCCAAAGCTAGTTAGCGTCCAATAGATGAAACTCTTTTTT
ACTTTTACTTTACTTTTCACAGAGTTTCCAAAGCCGTCAAAACCGTCGCC
CGTCATTCAGTGAGTCTGTCGTCATCGCTTTAAGCAGTTTTGATTTCTTG
AACAAAGACGAAGAAGACGAGGACCCAGGCACACTAAGAGGCCAATCGCC
AACTCTTTACATACTACCCATACAGTGGAAACGTGTACACAGGGCCTTAT
TTCATCACTTGTGTGTCCTATTCGATTTGATTGACGTTTTTGAAAAGAAG
TACGGGCCGTTGCAACACGTGGCTAAAGTAACACAAGCGGCAATCGTCCG
AAATATCAAAACTATCCGAGAATTGAAACGATTGATTTCGGAACCAGAAG
AAATCAACCTTCAAACTGGTAAGTAACCAGCAACCTCCTGGGTATTGTCA
GCTTTTTTATGCTTACTGATAGCGCTAGATGATACCCTGGCGTCAATCGG
TAACGTAAATAAAGCCTGGGATACACGGAGACGAGGTTGAGAATTCAGCT
CAATTCATTTTCTAGTAAGTAACTCTTTTATAAGATTTTATTTAGCAATA
CAAAACAGTATACGTCTCAGTGGCGTTGAATAAAATTATTTACCAGCAAA
ATGAAGATGAGGGCCTTTTACAAAGGAAATTAGTTTTTGGCAATTTAAGA
CTACAGTAGAGTCTCTATAACTCGAACTTGCACCGGGAACAAAAACTTGG
TCGAGTTAGAGAGACTCTCTACTGTATATCAAACAAATAATTTTCACTTG
CCCCTCTTGTTGGTTGTATTTTAAGTAACTCTTTCTCAAATCTTCTAGTT
TGTGAGAAGTACGTGCAAAGTGAGACACTTGGTAACACATGGGAAGTCAG
TGCGGCTACCGACCAGGTACGAACTCTAAAAGATAAAGTTCTGGGTTGTT
TGCTTACAACTAAGCAACAAAATTAGTTTTATAAATCGTTTTCTAGATTC
CTTAAAAAGGATATGCCACCGTAGGCTCTTATGAAAGACTTTGGTGTATT
TCCATTTCTAATAAACTCTCGCTAGTAAAAACTCAAGGACTATAGTGGTC
ACCCAAAAGTTATGTATAATATCTGCTGAATGGGCAGGAAAATCCAACTT
AAATATTGAGCGCTGATAAACAAACGAATCTCAATTCTTCTTTGCTCATG
TGGTGTGATAGAAGAGAAACTTGGTTTTTATTCTGTTAAAAAAGCTTAGG
GGATGCCTTAGATGATGTCCTTTAATAGCTGTCCTTTAATAGCTGTATTT
ACTTATTGTTTTTATTTCTTTTAGCCATTATTTTGCAACCGAGCTGCCAT
CAATATGACAATGAGTGCTCTGTACAACCACCTCCGAACTAGTACGGAAA
CAGCCAACACTTTGCAAGTACAAGCTAATGAAGGTAATGCCGAATTTCTT
TCAATTTTTTCTACAATAATATAAAAACCATGTATTTTCTCAGGTGCTTG
ATAAAAGCACTCTCCTTTTAAGACTATATTAACTAGCTATCTATAGAGTA
ATATGATTTCTAAGAAATTGAACCCTTGACGACAAACATTTACGTTAGAA
ACGAGTCTGTTTATATCGACGATCAAGTTTGTCTACCTAAATCTAAAGTA
TCATTATTTTCTTCACAATAGACTCTCGCTAATTCGAAATTCTGTTATTC
GAATCTTTCTCTAATAATCCTCCGTCTCTGCCCAGGTGAAAGCCTCATAA
AATGACTTTCTATAAGTCAGATCTCTCTGTAATCCGAACCCATAAAATCT
ACCGTTCGAGAGTCAGTTGTATTTTTGTTTCTCTCAAACTCAGTTTGCAG
TGCAGCATTAAAGCATTTGATGGGTGACGAACAAAGTCTCACAGATCAAG
ATGTCATCACTGTCTTTGATTTCGTTGAATTCTTCAAACGTAAAGTACAG
TAAGTGAATTTCTAAGAAAGTAAGTCTGCGACCGCAGTCGGAGGCGACCC
GAAGGCTCCTCTTTCGATAGCTATCTACCCGAAGGTAGGGGAGGGCGCCA
CTCTTTCTCCCTGGATTGCCCCACTTACCCTTGATCCTTCTCTTAATTGC
TGAGCATCAAGCAGAGAGGCATCAAGTACCATTTTGAGGATCTTTGGTAT
GATCCGTTGGGATTTGAACCCACAACCTTGCGAACCGTAGCCGGATGCTC
TACCACTGTTCTACGGTTGCGAATTTGTAAAAGTAAAGAAAGAGTCTACA
TTTTTGAAGTTTCAAGTTTTGTTTACTTCATTTTTTAGGTCTCACAACGT
TGCAGAATTCCTACAGCACGTCAAGATGGAAAGTATGTAGATAGTAAATT
TTTGTTCACATCCTTTTGAAAAGCAATACGATCGATAGACGAGTGGTAGG
TCTGGGTCGACTATGCTCTAGTCTAAGACTTCATCACTATCTAAGAAATA
GTCTCTTGGGGATGGGGTTTTGCTTTCAAAGCGGCTTAATTGTGGGTAGA
GTTGACGGTCTTTGCAGTTTTTCTCTCTAACTACTGTCATTATAGATAGT
AAAGTCCGAGCAACTATATTTTCCCGTATTTACTATCCCTGTAACGGAAG
CTAACATTGTCTAAGGTCAATGTAATACCGTCTCCCGGTACAAGCCAAAC
TTTAAAACTATCTTTGAGTCTCCATAACTCGAACACGCACGGGGAACACA
AATTTGTTAAGGGAAACGAGTTAAGAAAATTCCGAGTAAAGTTTATAAGG
GATTGTTCACTGAAGGGACGAGAAAACTTGTTTGAGTTAAGAAAACGTTC
GAATTATAGAAGTTCGAGATAAAGAGACACACAGTCAAGATGGTAAACTT
ATCGAATCATCTCTTTCTTTAGTTACTGCTTTGAAAGGCTTGGAGGCGAC
TGATGAGCTGGTAGTAAAATCAACGGTAAGTTGTTATTCCTAACTTTTTT
CCGCTCTGTAATTTCTTTTACGTTTGTTTTTTTCGAAACTCCGTAAGCTG
TACCAACCCCAATGTCTTTACTACTAAAATAAATCGCCATAGATCGTTCA
ATGTTTGATAATTTCCGGCACACACGTGTTTGTTTTTTTAATAAGCAAGT
GTCTACCCCTATGTATCAAACTCGCATTATGCTTAGCATTCTATTGTTCT
TAAACAATAGAGCCATCATTTAGGTACCAAAAACTGAGCCTGTCTACATT
TATTAAACGTTATGCTTATAAAAAACATACAGAAAGAGTGGAGTTTTTCA
AAATAAGTGCTATACGGTAAGGTGTTATATGATTGCGATTGGGCTTTTCC
AGAAAAAATTTGAACATGGAGGGTCGAGGATATAACGTTTTTTTTTTATT
TCCCCCCCCCCCTGGACATCGGACAACAAATCTTACCTCCCGGACAAGCA
TCAGCTGACTCCCCGGACATTCAAAATTACCCCTAATCAGAGCAAATTTT
CCCCCAAAACAAGGCCAATTTTGTAGATTTTTCACTACTCCCGGACAAAA
TATTCAGTATATCCTCCACCTCCTCCCCCCATGTTCAAAAATTTTCTGGA
AAAGCCCAATTATAGCTTGTATAACAATAACAATATACCATGCCATTCAG
CTTTCCTTACCAATTTTGATGACAAGCTTTTTGTGACTATTTTAATTTCA
GCTTCAACAATATTGGCATATACCAATCATCCCATCTTGTATACAAGCTC
TCTTTAAACTTCTCTCGCAAGGAAAAACTACAACCAAAGCAAACACAGGT
AATAAGCCTTTCTTAGCATTAGGTTGTTACCATTTTCTTCGCAATAAATG
TGCGTTCAAACTGTACGGATAAAACACGCCAGGTCTTTAAAAATTATTTC
TTAGGTTATAGCGATTATTTCTCGGAAAATATTTAGCTACGGAAAGCCAT
GTGATATATTTTTCATAACCATTTCGGGGGACGACAATCACTATGGTTGA
ACTTACTAAGAAAATTTGTTTACTTAACGCACAATTAATCCTTATTGAGT
TGAACCATGGCGCTCTGTTATCACCCTAACGTCGTGCGTTGGCAAAAAAA
TACTTTAATAAGTTTGATAGTTTTACAGTTTATAATTCTTCATTTCCTTC
ATTTTAAATAGTAAATGCACTGAAGCAAGTCCATAAAACAACTGCTACAT
ATGTACGTATATTTTTTTCATCATTTGTTAAGTGCCATCTAAGCTAAGTA
GATTTTTCAAGGATTGTCCTGTATGTACGGTAGACTCTCTAATTCGAATT
TCTATTACGTATGTTTTTCAAAAACTTCTGGTTAGACTCATCATCGATGG
ACTCATCTAGACTCATGTTGAAGCTACTCATGATGTTTTGCTTGCATTCA
TATTTCTCCTGCATTTCTCCTGGTTTTTATACTGTTTGTGTTTTTCTGAG
ACGGAGACGGTAAGGTCTTATGACTAGATCCTAACCAACTGAGGACGACG
TTAAATCAGCACTTTTACCGTCCTCGATTTTGTGGGACAGAACTGTTGGT
TATTCCAAATCGCTTCAGTCACTCTACCGTCCTCAAAAGTGCAAATACAT
AAACTCGTTTATGACTCATGGAGGGAGGTAATTTTGTGACTTTCAGATAG
ATTTTGTCAGCCCATAAACGGTGGCGAAATCAACACGTTTTATATTTCTT
TTTTCAGCTGGAAGACATAATAGCGCTTAGTTTGGAGCACAAAAACACGC
CTGTCATTGTGGGTGCATGTTTAGCTGCTGGCGAACTCAGGGTAATTTTA
TTCTGCATTTATTATTTCATAGAATTTTTCACATGCTTTCGTTCAATCGT
TTGATTATAAATTGTTTATTTTTCCTGTTCTTTCAGCTATTCGTTCGTTC
GTTCGTTCGTTCGATAATTAGAGAAGCTTGCTAAGTAATGCATTTAACTT
TGTTATATATCTTAATTTTCCATCCAAGGAGTATTCTCCTTTGGGGCCGT
CCACATAGTACGTACGCATTAAGGAGGTATTAGCATATGCGATTTTTTGC
ATTTTAGTGCGTGCGTACTATATGGACGGCTCCTCTACACTGATCACCGA
ACGGCTCCTCTACACTGATCACCGAACGGCTCCTCTACACTGATCACCGA
ACGGCTCCTCTACATATCCTTTGTCGTCCATCACAGACTCTTATTTTTTT
CAAATTCTAGCTGAATTCATTTTCGGAGAAGCTGAGATACATTCATGATG
TTGGAAACTCTGTGGTCAAAGATGCTGCAGATTATTCACTCAAACGATTA
GGTATTTGCTAAAATTTGTATTTTAAAATTGATCTGCTTTTCATAAGTTA
CGTCACAAACATCACTTGCCTCGTATTCAAACAATTTCCATGGTGATCAT
ATCCCTTGAGACATTAAATGAAGTTTTAATGAAAAGAAAAGTAGTTTTAA
TAAACTCCGCTGGGAGTTAATCACCGTGGCAATAATTTCAAAACGAGGCA
AGTGATGTTCGTAACGTAAGTTCTATTGAAACAAAAAAGAAAAGAATTGA
ACTACATCGCGTTTTGTGGCATTGGAAAATATTTGAGAGTAGAGTAGGTA
GAGTAGAGTATTAGTGAGTGGAAAAGAAGGTAAAAAAACAGATTAATATG
TTCAAAAATTCGTATTAGGCTCAATTTTTTAGCTTTAGATTTTCTGTTTG
GTTGACAATAGAATATTTGCATTTATTATTAAACTCATTTCTTTTCGTTT
TTCAGGCCATTCTTACATCAAATCGTAAACAAATGTTGATAGTTCATCGG
CCATCGACTCCTTAGTTTCAAGGCCATCGGCTGCGGAGATATGATGGTTG
AAATAATGTTCCAGATTTGGACAAAGTGAACACTAACTTAAGGTCGGTCT
ACGCTTGCGCGCGCTTCGATCGCACTTCGATCTCGAGCGAAGCTTCCATG
CTATTGGTCAAAAGAAAAATGAAGCA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003377	XLOC_003377	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000061	supercontig	sc0000061:609256..625381 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.82599	5.08771	4.72585	2.88969	4.92515	3.3359	6.03535	6.27795	1.31896	2.72292	2.11434	3.11497	6.59294	10.808	0.888769	0.317928	7.05008	5.21873	4.4369	4.06253	2.5222	2.21443	2.39283	2.71929	10.6472	8.00058	2.04035e-10	2.29047	4.63265	7.07996

Blast

[Close]

BLAST of TCONS_00005937 vs. Swiss-Prot (Human)
Match: RIPR2 (Rho family-interacting cell polarization regulator 2 OS=Homo sapiens GN=RIPOR2 PE=1 SV=4)

HSP 1 Score: 103.99 bits (258), Expect = 3.525e-22
Identity = 60/186 (32.26%), Postives = 93/186 (50.00%), Query Frame = 2

Query:   98 KVADLQELYIHQHHMREGATKLIESLEHRYNINQSRIEECRLQRQIN--AERLLLIEEEISKMSGSLKFKVLGLYGFSRISPGDTYELTFKIGSHQKWKSKCKVEVHG-QRWIEPLFVFQADVSKSMTIKLAELGSFGKTTGIGEATCYVQEFLSPEPKVFLIPINAIGTMKVKLGVAWSGLDKTD 646
            KV +L E Y  Q  +++GA+K+ ++         +R     + R      E +  IE E+  + G    K+ GL GF+R+ PGD YE+  K G  Q+WK K K+EV+G Q W     VF   +   ++IK+ EL        +G  TC  +E  +  P+V  + IN +GT+K+ L + W   D  D
Sbjct:  138 KVDELYEAYCIQRRLQDGASKMKQAFATSPASKAARESLTEINRSFKEYTENMCTIEVELENLLGEFSIKMKGLAGFARLCPGDQYEIFMKYG-RQRWKLKGKIEVNGKQSWDGEETVFLPLIVGFISIKVTELKGLATHILVGSVTCETKELFAARPQVVAVDINDLGTIKLNLEITWYPFDVED 322

The following BLAST results are available for this feature:

BLAST of TCONS_00005937 vs. Swiss-Prot (Human)

BLAST of TCONS_00005937 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RIPR2	3.525e-22	32.26	Rho family-interacting cell polarization regulator...	[more]

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TCONS_00005937 (transcript) - C. hemisphaerica