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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005932 ID=TCONS_00005932|Name=TCONS_00005932|organism=Clytia hemisphaerica|type=transcript|length=511bp
tttttaacgagcacgaAACCGTCAATTAATTTTTGCTGTATTTGAATTGA
TTGAACCAAGTATTTTTCTATAACATTATTTTCTGTTTCTCCATTTTTAG
AGCTATTAAAATGgttaattcattaaatttgtttgtctttttttgcttga
gtcTATTTTACCAACAAGCTCAATGCTGTCATGGTCCTGGCTGCCGATAC
TCAAGTGATATTCATGGCGTTCAAGGGTCTAATACGGGACACCCTGTCCC
CAATATAGAACAAAGAACGAAGCCTCTCACAATCAAGGAGAGAAAAGATT
TGTGGTTACGCTTAGAGAGAATGCCACATCTACCACGTCCGCCTTATCCA
CCCCCTCCGCCTTATCCACCACGTCCGCCACATCCACCCCCTCCGCCTTA
TCCACCACATCCGCCATATGGAGATTTTCATCGACCAGcagaaatgaaga
aaacaacCAATCACCGAGTAGCTGATGAAAaTTCGGATTCAAGAAGTAAG
GAGAATAAAAT Run BLAST on NCBI transcript from alignment at sc0000061:565409..568702- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005932 ID=TCONS_00005932|Name=TCONS_00005932|organism=Clytia hemisphaerica|type=transcript|length=3294bp|location=Sequence derived from alignment at sc0000061:565409..568702- (Clytia hemisphaerica)
TTTTTAACGAGCACGAAACCGTCAATTAATTTTTGCTGTATTTGAATTGA
TTGAACCAAGTATTTTTCTATAACATTATTTTCTGTTTCTCCATTTTTAG
AGCTATTAAAATGGTTAATTCATTAAATTTGTTTGTCTTTTTTTGCTTGA
GTCTATTTTACCAACAAGCTCAATGCTGTCATGGTCCTGGCTGCCGATAC
TCAAGTGATATTCATGGCGTTCAAGGGTCTAATACGGGACACCCTGTCCC
CAATATAGAACAAAGAACGAAGCCTCTCACAATCAAGGAGAGAAAAGATT
TGTGGTTACGCTTAGAGAGAATGCCACATCTACCACGTCCGCCTTATCCA
CCCCCTCCGCCTTATCCACCACGTCCGCCACATCCACCCCCTCCGCCTTA
TCCACCACATCCGCCATATGGAGATTTTCATCGACCAGCAGAAATGAAGA
AAACAACCAATCACCGAGTAGCTGATGAAAGTGAGTATTGTTAATTTGAA
AATGAATGGCGTATGATATTCAGTGAAAACATCATTATATCAATCTTCCC
GGGGGGGGGGGCACTCAAGCGAAATTGGGAACAGGGACGTGCCACTGAAA
ACAATAAGTCTTTTTTTTAGGCTCTGGAGATATCTGACAGGCTCCCAAAT
TTACAAATTTTTAAGATTTGTGTCTGACAGGGTCGACTTTTGGTTATTTT
GGACAATTTTCAGGGTGGAGAATTAAAATTCTTTTCAATATTTCGTCTTC
ATCTCGTCATTTTTGCTACTTTTCAGGGTGCAAATGGGAAATTATTTTCT
ATTTTTCGTACCGTCAAGGGTCCTAAATTTACCAAACATTCATATCTGAC
AGGGTCCACTTTTCAAACTCCAGCGGCACGTCCCCGTCGGACGTCAAGGT
CAGTGCCCCCGGATAATCTTCCCATCACAACTCGTTTAAAATTTATAGCT
ATGGTGTTCGAAAATTGAATTTTTAAAAGAACTAAAATATAAGAAGAGCT
TTGCTTTGGTATAATTTAAAGAACAAATTAAGGCTTTTTAAACATCCGAT
TTCTTAGGAAAGTGCACACGAATACTCACAAAATGGTGAAAATAAGAACG
TGTTAAGAATATTTTTAAAGGTACAACTCAAAAAGTTAAGAACATCCCAA
TATTCAAAAAAATTGAATATTCTTACAAAAAAACGTGTATGGGCGGGATT
CTAAGATTGGATAAGACTGGTTGACCCAAAAAGAAGTAAAGTGAAAATTT
TTTCCCTTAGAATATACGCAAAAGATTTTACCAAGAGTCAATTTCATTTT
GGACTTGTTCTAACCTCTATTAGTTATACATTTTATAAGAACATCCAAAA
AATTTCAAACTTGCGTTTGTTCTTAACTATTTGAGTTTTAAGCCTAAAAA
TGATATTGAAATGCTCAAATTTTTATCATTTTGTGAGTATTTTTGTGTGA
TTTCTTAACAAATTGGGCGTTTTTGAGTCTGCCAAGCCTTAAAATGTTCT
TTTAACTTGTTCTTAACATTTCAGCCATCGAAGCCCGATATTCTTAAATA
GTTTGTTGTTATAAAAATACGTGTAATGTCAATATTTTAATATTTAGATT
CGGATTCAAGAAGTAAGGAGAATAAAATTGGTGTGATAGCTCTCATCGTT
ACCATTGTATTATTTGTACTGGCAATTACAATAAGTTACGTCACTCACCA
ACGTAGAAAGACGAAAAAGTTGATTGAAAGACGAATCAGCCAATCACTAC
CAAGCTTGGAAGAAGATCCGGATATTGTTATGGAAGAGATTTCAGTAAAC
CCGTCAGTTGTTGTGGAAAGATCATCTCAAAGTCGTTTGGAAACGAGCAA
TGATGGATTGGCAATGCTAGCCCTACAAAAACAAAATGGTAATTCGTCTT
TCCTTACGTTTTGTACACTGTTAGTGGGGTCGTTTAGCATAATTTACATA
ATATACCATTCGAAAGCTCTCAAAAAACTATATAGAAGACTTTTAAATGG
GTATAGCCGATTTCATTACCTAACTCAAGATAATTCACGCAGAAGATGCA
ATTTATGGTCAATTTTAGACCAAAATGTGGCGAAAAGTGGAACTTGCGCA
TGAAATATGTTGTTAGGTAAGGAAATCCGCTATAACCGTCTAAAAGTCAG
CCTGTATTTTTCTAACACGTCCACACTATGTCCGATTCTGTCAGAGTCAA
AGATTNCTGTCTTCCCGGGGGGGGGGGCACTCAAGCGAAATTGGGAACAG
GGACGTGCCACTGAAAACAATAAGTCTTTTTTTTAGGCTCTGGAGATATC
TGACAGGCTCCCAAATTTACAAATTTTTAAGATTTGTGTCTGACAGGGTC
GACTTTTGGTTATTTTGGACAATTTTCAGGGTGGAGAATTAAAATTCTTT
TCAATATTTCGTCTTCATCTCGTCATTTTTGCTACTTTTCAGGGTGCAAA
TGGGAAATTATTTTCTATTTTTCGTACCGTCAAGGGTCCTAAATTTACCA
AACATTCATATCTGACAGGGTCCACTTTTCAAACTCCAGCGGCACGTCCC
CGTCGGACGTCAAGGTCAGTGCCCCCGGATAATCTTCCCATCACAACTCG
TTTAAAATTTATAGCTATGGTGTTCGAAAATTGAATTTTTAAAAGAACTA
AAATATAAGAAGAGCTTTGCTTTGGTATAATTTAAAGAACAAATTAAGGC
TTTTTAAACATCCGATTTCTTAGGAAAGTGCACACGAATACTCACAAAAT
GGTGAAAATAAGAACGTGTTAAGAATATTTTTAAAGGTACAACTCAAAAA
GTTAAGAACATCCCAATATTCAAAAAAATTGAATATTCTTACAAAAAAAC
GTGTATGGGCGGGATTCTAAGATTGGATAAGACTGGTTGACCCAAAAAGA
AGTAAAGTGAAAATTTTTTCCCTTAGAATATACGCAAAAGATTTTACCAA
GAGTCAATTTCATTTTGGACTTGTTCTAACCTCTATTAGTTATACATTTT
ATAAGAACATCCAAAAAATTTCAAACTTGCGTTTGTTCTTAACTATTTGA
GTTTTAAGCCTAAAAATGATATTGAAATGCTCAAATTTTTATCATTTTGT
GAGTATTTTTGTGTGATTTCTTAACAAATTGGGCGTTTTTGAGTCTGCCA
AGCCTTAAAATGTTCTTTTAACTTGTTCTTAACATTTCAGCCATCGAAGC
CCGATATTCTTAAATAGTTTGTTGTTATAAAAATACGTGTAATGTCAATA
TTTTAATATTTAGATTCGGATTCAAGAAGTAAGGAGAATAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005932-exon-sc0000061-1575043694:568223..568702 | TCONS_00005932-exon-sc0000061-1575043694:568223..568702 | Clytia hemisphaerica | exon |
| TCONS_00005932-exon-sc0000061-1575043694:565409..565439 | TCONS_00005932-exon-sc0000061-1575043694:565409..565439 | Clytia hemisphaerica | exon |
| TCONS_00005932-exon-sc0000061-1510915933:568223..568702 | TCONS_00005932-exon-sc0000061-1510915933:568223..568702 | Clytia hemisphaerica | exon |
| TCONS_00005932-exon-sc0000061-1510915933:565409..565439 | TCONS_00005932-exon-sc0000061-1510915933:565409..565439 | Clytia hemisphaerica | exon |
| TCONS_00005932-exon-sc0000061-1491911889:568223..568702 | TCONS_00005932-exon-sc0000061-1491911889:568223..568702 | Clytia hemisphaerica | exon |
| TCONS_00005932-exon-sc0000061-1491911889:565409..565439 | TCONS_00005932-exon-sc0000061-1491911889:565409..565439 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:565409..568702 - |
Blast
The following BLAST results are available for this feature:
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