TCONS_00005930 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005930
Unique NameTCONS_00005930
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005930 ID=TCONS_00005930|Name=TCONS_00005930|organism=Clytia hemisphaerica|type=transcript|length=1346bp
GAGATCCACAGCAATTCACTTTCAAATTATCCAAAGAAAACGTGAAGAAT
ATCACAACGTACATGACTTATAACCGCGAAGTGGAAATCAAATATACACC
TGATGATATCACTGGTGAAGGTGCATCGAACCGTTTCGCTTTGGGTTGGA
TGTTAGTTGACAAGGCACCTAAATCAagccaaaataaaaagtcatcGTCC
AGAGGGTTTCTAGTCATTGCTATCTGCTTTCTATCTTTGTTtggaatctt
ttttttgttcgcaTGTTTCGGGTGTAGACCAAAAAGGCGTCTTCAAAGAG
TAGTAAGCAACCGACTACCATCTAGCCTCCATCTTTCTCAAACGATACAA
GTTTCTTTTGACAATGAAGCCTCGACTACTACAGAAGAACGTAGTGTTTC
AACTAGGAATCAAGAAGAGAATACCACAAGTAGAACAAGATCGAATTTTA
CAAATGAAATTGACATTGGAAGTAGAAGAGACAGTTTCAATAACTTATTA
CACCTTTTGGAGATGGCTGTCCCGGGGAATACGGCTCTTGGTGAAATAGG
AATTGATAATAATACACTGGAAATGGCTGAACCACCCGAGGGAAATATTG
AATCAAATAGTGAAATTGGAAATTATAATAGCGTGTTTAATGACCCTTCC
GATTCACCTCCAACGTACAATGACGTCACACTTGGACCGAGTCCTCCAAG
TGAAGCACCTCCTCCATCTTATGATGAAGTTCTCAAAATGGCAAGGTGAC
GATgctgacaaaaaaaacaaaggctgaattgTCAATTGATAAAGATCACG
GTCATTTGATACTTACTGTCGAAATTGTCGTCTTAACCAATTCTCCAGAT
ACCGTTAGGAAAACCTTTGACGTTAATTTAAATCATTGACAGTactgttt
tttaaagaaacagaTGTCACTTAAAGATAAAACAAAATGCGTGGAAAACG
CTTGGTGGGATAGGTATATAGTCCATTGATATATCAGCATGTTCATTTTC
TTTATATGACATCAGAGAAGAAAACCCGAAGAACTACCTCTATCAAAACA
GCTTTTCCTGAGGAAAGAATACGTTACGCCACACTCTGTGACCCAAGGAC
CATTCAACTTTATCCATCATAAAAGCGTATCAAACTCCCTATCTATAGTT
GACGTTTTCCTGGAATGTCTGACAATGTTACTAGGTGTCAACATtgtaaa
tgcaaaaaaaaataggaCTACAAAATCCTTTTTCGTTCTTCTCTATGCTT
GAAAGATGAATCTATTAATCaacatttgaatttgaaaatttatttttttc
gccCAAAAAGAGTTACTTCATCATCATTGGCGATAGTCAACGTGCC
Run BLAST on NCBI

transcript from alignment at sc0000061:557396..559526-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005930 ID=TCONS_00005930|Name=TCONS_00005930|organism=Clytia hemisphaerica|type=transcript|length=2131bp|location=Sequence derived from alignment at sc0000061:557396..559526- (Clytia hemisphaerica)
GAGATCCACAGCAATTCACTTTCAAATTATCCAAAGAAAACGTGAAGAAT
ATCACAACGTACATGACTTATAACCGCGAAGTGGAAATCAAATATACACC
TGATGATATCACTGGTGAAGGTGCATCGAATCGTTTCGCTTTGGGTTNTA
ACCGCGAAGTGGAAATCAAATATACACCTGATGATATCACTGGTGAAGGT
GCATCGAACCGTTTCGCTTTGGGTTGGATGTTAGTTGACAAGGGTAAGTA
AACTAAAGGGATTCATAGCTTGTCAAAGATACACTCAACTCTCTCTAATT
CGAAATTCTATTATTCAAATTTGTTTGTAATTCGAACTAAATTATTGGTC
CCCTTAGCTGGTTTAGATTTCTCTCTCTAATTCGAATTTTTCTCCAATTC
GAAAAGAATTTTTGTTCCCTTGAAGATCAAATATGAGAAAGATTCAACTG
TTTGACAGTTTGAATTCTTTAAAAACTGGTTCTTACGCAACTCTTACGTT
GGAATTCTTGACAAAAGTAAAAAAAATTTGTAGCTTGTTCAGGAAAAAAA
CTTGCCCAGGACAATCCACAAAGCAAATCAAATATCACATACTTTTCTAT
ATATATTTATCATAATAATTCTTGTTTCTTTACCTCTTTCCAGCACCTAA
ATCAAGCCAAAATAAAAAGTCATCGTCCAGAGGGTTTCTAGTCATTGCTA
TCTGCTTTCTATCTTTGTTTGGAATCTTTTTTTTGTTCGCATGTTTCGGG
TGTAGACCAAAAAGGCGTCTTCAAAGAGTAGTAAGCAACCGACTACCATC
TAGCCTCCATCTTTCTCAAACGATACAAGTTTCTTTTGACAATGAAGCCT
CGACTACTACAGAAGAACGTAGTGTTTCAACTAGGAATCAAGAAGAGAAT
ACCACAAGTAGAACAAGATCGAATTTTACAAATGAAATTGACATTGGAAG
TAGAAGAGACAGTTTCAATAACTTATTACACCTTTTGGAGATGGCTGTCC
CGGGGAATACGGCTCTTGGTGAAATAGGAATTGATAATAATACACTGGAA
ATGGCTGAACCACCCGAGGGAAATATTGAATCAAATAGTGAAATTGGAAA
TTATAATAGCGTGTTTAATGACCCTTCCGGTAAGTTCAGAGGATACCTTT
TTACGGAAATACAAATTCTTTTCCGACCTTTTAGTTGTTTCTTATGAGAT
CAGAATCTTAACTGTGCAGTAGTGCAGCAATTAATGAACAAGAGACTTGA
TAACGCTACCATGGTCAATCTGCATTGAGTTTTATCCTACAACATTCCAA
TCAGAAATTATGCGCCTTGTCATGCTTAGGAATTCAATGAATCTACATAT
ATTTTTCCCAAAAATTCAATCAGTATATTGGATTTCAAGCTAATGAACCT
ATACAAATTTGGTCTATATCCATGCCTCTCGTTTAGATTCACCTCCAACG
TACAATGACGTCACACTTGGACCGAGTCCTCCAAGTGAAGCACCTCCTCC
ATCTTATGATGAAGTTCTCAAAATGGCAAGGTGACGATGCTGACAAAAAA
AACAAAGGCTGAATTGTCAATTGATAAAGATCACGGTCATTTGATACTTA
CTGTCGAAATTGTCGTCTTAACCAATTCTCCAGATACCGTTAGGAAAACC
TTTGACGTTAATTTAAATCATTGACAGTACTGTTTTTTAAAGAAACAGAT
GTCACTTAAAGATAAAACAAAATGCGTGGAAAACGCTTGGTGGGATAGGT
ATATAGTCCATTGATATATCAGCATGTTCATTTTCTTTATATGACATCAG
AGAAGAAAACCCGAAGAACTACCTCTATCAAAACAGCTTTTCCTGAGGAA
AGAATACGTTACGCCACACTCTGTGACCCAAGGACCATTCAACTTTATCC
ATCATAAAAGCGTATCAAACTCCCTATCTATAGTTGACGTTTTCCTGGAA
TGTCTGACAATGTTACTAGGTGTCAACATTGTAAATGCAAAAAAAAATAG
GACTACAAAATCCTTTTTCGTTCTTCTCTATGCTTGAAAGATGAATCTAT
TAATCAACATTTGAATTTGAAAATTTATTTTTTTCGCCCAAAAAGAGTTA
CTTCATCATCATTGGCGATAGTCAACGTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003374XLOC_003374Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005930-exon-sc0000061-1575043694:559407..559526TCONS_00005930-exon-sc0000061-1575043694:559407..559526Clytia hemisphaericaexon
TCONS_00005930-exon-sc0000061-1575043694:559284..559328TCONS_00005930-exon-sc0000061-1575043694:559284..559328Clytia hemisphaericaexon
TCONS_00005930-exon-sc0000061-1575043694:558398..558883TCONS_00005930-exon-sc0000061-1575043694:558398..558883Clytia hemisphaericaexon
TCONS_00005930-exon-sc0000061-1575043694:557396..558090TCONS_00005930-exon-sc0000061-1575043694:557396..558090Clytia hemisphaericaexon
TCONS_00005930-exon-sc0000061-1510915933:559407..559526TCONS_00005930-exon-sc0000061-1510915933:559407..559526Clytia hemisphaericaexon
TCONS_00005930-exon-sc0000061-1510915933:559284..559328TCONS_00005930-exon-sc0000061-1510915933:559284..559328Clytia hemisphaericaexon
TCONS_00005930-exon-sc0000061-1510915933:558398..558883TCONS_00005930-exon-sc0000061-1510915933:558398..558883Clytia hemisphaericaexon
TCONS_00005930-exon-sc0000061-1510915933:557396..558090TCONS_00005930-exon-sc0000061-1510915933:557396..558090Clytia hemisphaericaexon
TCONS_00005930-exon-sc0000061-1491911889:559407..559526TCONS_00005930-exon-sc0000061-1491911889:559407..559526Clytia hemisphaericaexon
TCONS_00005930-exon-sc0000061-1491911889:559284..559328TCONS_00005930-exon-sc0000061-1491911889:559284..559328Clytia hemisphaericaexon
TCONS_00005930-exon-sc0000061-1491911889:558398..558883TCONS_00005930-exon-sc0000061-1491911889:558398..558883Clytia hemisphaericaexon
TCONS_00005930-exon-sc0000061-1491911889:557396..558090TCONS_00005930-exon-sc0000061-1491911889:557396..558090Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:557396..559526 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.91621	4.80503	4.56544	4.64434	0.420789	0.232759	0.280814	0.375564	0.148224	0.24247	0.284515	0.39998	2.71027	3.18927	0.231213	0.139001	0.72613	0.566293	4.74965	1.91884	1.88158	1.59713	3.09873	2.65817	1.07646	1.58465	0.840606	0.505699	1.09015	1.16235
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005930 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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