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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005906 ID=TCONS_00005906|Name=TCONS_00005906|organism=Clytia hemisphaerica|type=transcript|length=715bp
GCCAAACTTACGAAAACTTTCCAtatgtgagaaaaaaatcttgatgAAGA
AGAAGTCAACAACTTCAAGCTTGGGCAGTCAACTGACATCACCAGTAGAC
ACACCAGACAACATCAGTTATCGCTCCGAAGATGATGATTTTCTTTACGA
AGCACCGAAAATAAGCATCACTCTACTTTATTCGCTCCTTGCTACTATCC
TATGTTTCCCTATTGGATGCTTCGCATTGAACAATGTTTATAAGGTATCG
ACATATCTACGATCTGGCCGTAAAACAAGAGCTCGCAAACATGCAAGATT
CGCCAAAAATCTTTCCAACGCTGGAGTTGTCATTGGAACGTTGTTTTGGT
GTATAGCTATTATTTTAATTATCATACATTCGGTGATATTGAGAAAAGAA
GATAAAAGCAAAGTAGATTTGACTTAGCGGAGTGGATTATTAAAAAGAGA
TATTTTGGAGAATTGTGGCAGAATGAATGAAATACCATCTTAAATCAGCG
CCACATTAAAAAGCGTCATTCTTAACCTTTATATTGGGCTCAtccagaaa
catttgttcaagtagagtggaggatatattattctTTCAATGATTTACTT
CCTGGAGAGTTCGATCTTCAATCCCCTGGATACGTGTTATACACCTGGAG
ATTGCAAATTGACCTGGTTTTCACTGGAAAGTATGGTGAAATACCCGATG
AGAGACATAGAAGAA Run BLAST on NCBI protein sequence of TCONS_00005906-protein >TCONS_00005906-protein ID=TCONS_00005906-protein|Name=TCONS_00005906-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
PNLRKLSICEKKILMKKKSTTSSLGSQLTSPVDTPDNISYRSEDDDFLYE
APKISITLLYSLLATILCFPIGCFALNNVYKVSTYLRSGRKTRARKHARF
AKNLSNAGVVIGTLFWCIAIILIIIHSVILRKEDKSKVDLT Run BLAST on NCBI transcript from alignment at sc0000061:328953..331338- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005906 ID=TCONS_00005906|Name=TCONS_00005906|organism=Clytia hemisphaerica|type=transcript|length=2386bp|location=Sequence derived from alignment at sc0000061:328953..331338- (Clytia hemisphaerica)
GCCAAACTTACGAAAACTTTCCATATGTGAGAAAAAAATCTTGATGAAGA
AGAAGTCAACAACTTCAAGCTTGGTAAGCAGCGGATTGTGTATTTATGGT
CCCAACGGGCCGTTGGAAGCGAGGGGGGCTAGAATTTCGGGAAGAAATAG
CGAAAATTGTTCATCTTCTGAACCTTTTAAACACAAAAAGACGCTTTCTA
ATTGTTTTTTTTTTTAATTAACTTTAAAAAACTTTAGTCCGCAATGGCGG
TGGGTGCGTAGGTCGGGCGGGACCCATGGTATTTACGGATTAGGATTATT
CGATTTGAATTTTGTGAGTGGGGAATTTCGAATTCTATTAACTTAATGGG
ATCATTAGTTAGTGTTGGCTACTTAGGTGGTAAAATAGCGAAATAAGGAA
ATAAGGAAATCGTGTTAATTCTGCCTGAATCTAGTAATCGAACCTTGTAC
CGTAAGTTGGTTTAATGTCGACATCCCTCTTTTAATGCCGACACCCTTCT
TTAGGGATAGGGATAATAGGAAGGTCGGGATCACTTATTGACAAAAGATA
TTTTCCTCTTTTATCACTAAGCAAAGAAAAATAGTTTCCATCAGCGATTC
TGACCTTCCAATTATTCCTATCTCTAAAGAAGGGTGTCGAAATTAGAGGG
GGATGTCGACATTAGACCAACTTACGGTACGTATGTTGGCCTTGTTGGGC
AAACACTCCTGCTTCGCAAAATTAATACAAGCATTGACTGGCTCGCTTTC
GACATCTAGTCGCGCCGCGATACTTCAACCATTAGTAGTTTTAGATATAA
TTAGAAGTGGGCGTTCACGTTCACGATAAAAATATAAACAATCTTTTTTA
ACCAGGAGACTTGTTGCGAAAAAAAGGTAAACAATGATCATAGTGATAAT
GATATCTGAGAATTGCCACTTTTCGACAAGTTATAGATAGCAGCCCATCC
CTAATATAGAAAAGGCTATAAATGGAAATCTAGGTTTTTTTATTCCTGCC
AGATTGATCGTCATTTGGTAAGTGGTAGCGGAGGGCTGTAGCGTCTTTTA
ACACGCTATTAAAATACTACTATGATAGTTGAATGTTAGACGGTCTTAAA
CTAAACCTCGACTTCTTTCCTCTCTTATACAGGGCAGTCAACTGACATCA
CCAGTAGACACACCAGACAACATCAGTTATCGCTCCGAAGATGATGATTT
TCTTTACGAAGCACCGAAAATAAGCATCACTCTACTTTATTCGCTCCTTG
CTACTATCCTATGTTTCCCTATTGGATGCTTCGCATTGAACAATGTTTAT
AAGGTAAGTTTGTTTTAAAAAATTTGGAAAATTTTTAACGAACGTAGTTG
CCGATTTTTTGTTTGAATCATCTAAATTTCAAACTAGCGAAAGTTAAAGG
TTTTATTTTTGCTTGCTGATATAAACAAAAAAATATCTTTATTTTCCTCT
TTCTGACCAATCTTGCTCCACATCCGTGTCTATCCAATGATGTAACTGTT
ATTTAAAAACAAAACCTTCAAGCTATTGTAACCGCTAAAGACTTATCCGG
GGGACACTCAAGGTAATCGACCCACCTACTAATGCTACCGTAGTTTTTGT
TATGTTTTTCAGGCTTCCCAAAGTGCAGAGAGAGAGCACTCTAAGGGTGT
AAAAAGTGATAAAAACGAGTTTTTTGAGGCAAAAATTTTGAAAAATAGTA
CCTTTCGGCAGCACCATCCTCGCAACCGTTTTTGCTTCATTATGATTTCT
AGGAGTGGAATGAACCTGCTATCTCGGGGGATTGGTTCTGGTTATATAGG
GGAGGGGGGAGTTCGTATCTCTCTGTAATCCGAACAATTTAAGACTTTCT
GTTTGAGCTCGAATTAGTGAGGGTCAAAATAAATAAGGTCCCTTAAATTG
GTTCTTTCCTCACAGGTATCGACATATCTACGATCTGGCCGTAAAACAAG
AGCTCGCAAACATGCAAGATTCGCCAAAAATCTTTCCAACGCTGGAGTTG
TCATTGGAACGTTGTTTTGGTGTATAGCTATTATTTTAATTATCATACAT
TCGGTGATATTGAGAAAAGAAGATAAAAGCAAAGTAGATTTGACTTAGCG
GAGTGGATTATTAAAAAGAGATATTTTGGAGAATTGTGGCAGAATGAATG
AAATACCATCTTAAATCAGCGCCACATTAAAAAGCGTCATTCTTAACCTT
TATATTGGGCTCATCCAGAAACATTTGTTCAAGTAGAGTGGAGGATATAT
TATTCTTTCAATGATTTACTTCCTGGAGAGTTCGATCTTCAATCCCCTGG
ATACGTGTTATACACCTGGAGATTGCAAATTGACCTGGTTTTCACTGGAA
AGTATGGTGAAATACCCGATGAGAGACATAGAAGAA Coding sequence (CDS) from alignment at sc0000061:328953..331338- >TCONS_00005906 ID=TCONS_00005906|Name=TCONS_00005906|organism=Clytia hemisphaerica|type=CDS|length=1278bp|location=Sequence derived from alignment at sc0000061:328953..331338- (Clytia hemisphaerica)
GTATCGACATATCTACGATCTGGCCGTAAAACAAGAGCTCGCAAACATGC
AAGATTCGCCAAAAATCTTTCCAACGCTGGAGTTGTCATTGGAACGTTGT
TTTGGTGTATAGCTATTATTTTAATTATCATACATTCGGTGATATTGAGA
AAAGAAGATAAAAGCAAAGTAGATTTGACTTAGGGCAGTCAACTGACATC
ACCAGTAGACACACCAGACAACATCAGTTATCGCTCCGAAGATGATGATT
TTCTTTACGAAGCACCGAAAATAAGCATCACTCTACTTTATTCGCTCCTT
GCTACTATCCTATGTTTCCCTATTGGATGCTTCGCATTGAACAATGTTTA
TAAGCCAAACTTACGAAAACTTTCCATATGTGAGAAAAAAATCTTGATGA
AGAAGAAGTCAACAACTTCAAGCTTGGTATCGACATATCTACGATCTGGC
CGTAAAACAAGAGCTCGCAAACATGCAAGATTCGCCAAAAATCTTTCCAA
CGCTGGAGTTGTCATTGGAACGTTGTTTTGGTGTATAGCTATTATTTTAA
TTATCATACATTCGGTGATATTGAGAAAAGAAGATAAAAGCAAAGTAGAT
TTGACTTAGGGCAGTCAACTGACATCACCAGTAGACACACCAGACAACAT
CAGTTATCGCTCCGAAGATGATGATTTTCTTTACGAAGCACCGAAAATAA
GCATCACTCTACTTTATTCGCTCCTTGCTACTATCCTATGTTTCCCTATT
GGATGCTTCGCATTGAACAATGTTTATAAGCCAAACTTACGAAAACTTTC
CATATGTGAGAAAAAAATCTTGATGAAGAAGAAGTCAACAACTTCAAGCT
TGGTATCGACATATCTACGATCTGGCCGTAAAACAAGAGCTCGCAAACAT
GCAAGATTCGCCAAAAATCTTTCCAACGCTGGAGTTGTCATTGGAACGTT
GTTTTGGTGTATAGCTATTATTTTAATTATCATACATTCGGTGATATTGA
GAAAAGAAGATAAAAGCAAAGTAGATTTGACTTAGGGCAGTCAACTGACA
TCACCAGTAGACACACCAGACAACATCAGTTATCGCTCCGAAGATGATGA
TTTTCTTTACGAAGCACCGAAAATAAGCATCACTCTACTTTATTCGCTCC
TTGCTACTATCCTATGTTTCCCTATTGGATGCTTCGCATTGAACAATGTT
TATAAGCCAAACTTACGAAAACTTTCCATATGTGAGAAAAAAATCTTGAT
GAAGAAGAAGTCAACAACTTCAAGCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005906-exon-sc0000061-1575043694:331266..331338 | TCONS_00005906-exon-sc0000061-1575043694:331266..331338 | Clytia hemisphaerica | exon |
| TCONS_00005906-exon-sc0000061-1575043694:330036..330206 | TCONS_00005906-exon-sc0000061-1575043694:330036..330206 | Clytia hemisphaerica | exon |
| TCONS_00005906-exon-sc0000061-1575043694:328953..329423 | TCONS_00005906-exon-sc0000061-1575043694:328953..329423 | Clytia hemisphaerica | exon |
| TCONS_00005906-exon-sc0000061-1510915933:331266..331338 | TCONS_00005906-exon-sc0000061-1510915933:331266..331338 | Clytia hemisphaerica | exon |
| TCONS_00005906-exon-sc0000061-1510915933:330036..330206 | TCONS_00005906-exon-sc0000061-1510915933:330036..330206 | Clytia hemisphaerica | exon |
| TCONS_00005906-exon-sc0000061-1510915933:328953..329423 | TCONS_00005906-exon-sc0000061-1510915933:328953..329423 | Clytia hemisphaerica | exon |
| TCONS_00005906-exon-sc0000061-1491911889:331266..331338 | TCONS_00005906-exon-sc0000061-1491911889:331266..331338 | Clytia hemisphaerica | exon |
| TCONS_00005906-exon-sc0000061-1491911889:330036..330206 | TCONS_00005906-exon-sc0000061-1491911889:330036..330206 | Clytia hemisphaerica | exon |
| TCONS_00005906-exon-sc0000061-1491911889:328953..329423 | TCONS_00005906-exon-sc0000061-1491911889:328953..329423 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:328953..331338 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007593 | CD225/Dispanin_fam |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0009607 | response to biotic stimulus |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0009607 |
response to biotic stimulus |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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