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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005900 ID=TCONS_00005900|Name=TCONS_00005900|organism=Clytia hemisphaerica|type=transcript|length=1508bp caaAAATAAAGTGTGAAATATTCAAATGGAGGGAAAAAAAGACACAACCA TTGAATCGTCAGgtTCTGTTTTGAACATGGCCAATTCATTTAGCAGTGTT GATGAAGCAACAATAGCAATCACACATTTCATGGCCAAAACAAACTCTAG CTTTGCAGTCAATAAAACAGATGGGGAGTTTGGTAAACCAGGTATCAAGT TTGAGAAGCATCGTATTTTATTTGAAGATATCTCAAAAGAAGGGGTCATC AAACAAATCCAGTTTACAGGTTATCCCTTCCTTGTGACAGGGATGAAAAG GATGGAATGCTCTCACGGTGTTGATCGTGATAAAGAAAGGaaactgaaaa gaaaacttgaaaACAGTACAGAAGAAGAATATCAACAACGGAAATCTCGC AGTGgaagaatttcaaagaaaatgggTTGCCCAGCATCGATCCTTTTGAG agatattatatttttcaatgatgACAAGGTTAAAATTTTGTGTGTTATTC TAGATAGAATAGAGTCAATATTTCATGGGGTAAGCCCAGTAacctaataa tttttttcaatactttttAGTTGTATTAGGGCCACGGCTATTTAGCTCAG CCATAAATTAATTGAATGATGGATTGGAAGGATGCCCAATTGAAACATGC AAAGTTATAAAAAAGCAATTAATAGGATTTTTAAAGATGGCTCTATATGA CCAAGCTCGATCTGGTAGGTAGGTATGATTGAGATAGTTCACCACTGTCC GTCTCTATTACTTTGTTGTTCATCTTCTTTAATAATAGATAGAAGAGAAT ATCAAATATCAAAAGTCCAAAGCCATTAGTTGCATCAGACAGAAAATAGA TGAAGGGACAATCCATTTCACGCGAAGGATACTGGTGAAGTTTCCAGATC CTAACTCACATGAGGGACATTCAACAGACGAGTCTGCTGGTTCATTACAA AGACTGGATAAAAGTATAATAGAGAAAATTCAAGAACTTGTTATACATGG CATAGATGACATAAATGAGCTTGAAAATTTATTACATGAATATGTGGCTA AGCTCTTTCACGGTGACATTCCTCCAATAACATGTAGGAAATTCTTTCCT GAACCTAAAGATATAAGAAATCATGTGTATCGAATTAAAGCACAAATGAA TACAACAAGCAACTCTCATCCTGTTGGAAACTCTACCAAAGTTTGTGCAC CAAAGAAGAAGGTGTCACTTTCAACAACATCTAACAGTCAACAAACAGCT TGTGGTACTAATTTAACCATGAATAACCACCATCAATTTATCACAGATAA ACGTGAAAAAGTTAGATTCTTGTGCAACGAGGTTGAAAGTTTACTCGATA CGTGTGatccaaaagttttggatgACTTGGAGGAGAGATTACGACAGATT CGAGATTCAATGGTACCTGCTTGCATCAGCGAACAAGATGTGGTGTCGTC CAAAGATGAATAGTTTGATCATGATTTGATATTTGTAACCTTTGTAAAAA TGTATATA Run BLAST on NCBI transcript from alignment at sc0000061:203255..206321- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005900 ID=TCONS_00005900|Name=TCONS_00005900|organism=Clytia hemisphaerica|type=transcript|length=3067bp|location=Sequence derived from alignment at sc0000061:203255..206321- (Clytia hemisphaerica) CAAAAATAAAGTGTGAAATATTCAAATGGAGGGAAAAAAAGACACAACCA
TTGAATCGTCAGGTAAATTTTCCGAATTCGTTTTTCATCAAAACCTTGAT
TTGAAAACTTTGTTGTATATTTAGTCTGACATTTTATATCTCTAAAATAT
TTTGTGAGAATTAATTGAAAATGATATTACTTGAAAGCATCTTTTAGGAA
TTAAAAATGAACTCACTCAAACCGTTAGATCTCTATTTGCAAGGTCTCAC
ACTAAAGTTAGCACATTTTATTTTATAGTAAAAAATGTTGATACCTCGCA
GCCCTCAGAAGAAACGCTTGATGTTACAAAACTTTGTAGGATAATACTTT
TTATCGTTAAGAAAGATATAGTATATATTTTTTTACTGTATCTTTGGAAC
TGCAATTGGAACTGGAAAGTTAATTTGATTTTGGGACTTGGTATTATTTG
AACTTCATTTTTTTGAAACTCATCAATGGGTATGGTTATTATGGAGAATT
ATTTTTGTTGTTTTTTTAGGTTCTGTTTTGAACATGGCCAATTCATTTAG
CAGTGTTGATGAAGCAACAATAGCAATCACACATTTCATGGCCAAAACAA
ACTCTAGCTTTGCAGTCAATAAAACAGATGGGGAGTTTGGTAAACCAGGT
TTGTCTTTCATCTGTTTGGGGATATTTAGTTTTCGTTCATCACTAGTAGA
TTTAGGAAGAGATACTTGTCGTTAAGGTTAAGCGTTGAATTATTTCACAC
ATCAAAGTCAATCAAAGTCAGTTTAATTTTAAATGCATGTGTCCTCAACT
CAATAAAAATTCAAAAAATATTTTCGTTAAAGGTTTTATTTTAACATGTT
CCAGTTTCGTATTAATAGACACATATTTCATATCAGGACAGTGTCTGCCT
ATTGTTATTATTATGCTAAAATAAACATATATACATACATTATATTATGC
CCTCTCTCTGATCATCTTGCTTCACTTCCGTGTCAATCCAATGTGAAAAA
GCTTTTAAATTAAAATCGAGTAAGCAAATGATATCACTCTTATTGAAAAA
CAAAACCTTTAAGGCATTTGCAAGAAATGATTTTGATAAATTAATTTTGC
TTGGTACATTCTGTGGAAAGGGAATTGCAAAATATTATTAAAAGGTGTTT
AATTTTCAGAATTTTTTTGTATCTTCTTTGCTGACAATAGGTATCAAGTT
TGAGAAGCATCGTATTTTATTTGAAGATATCTCAAAAGAAGGGGTCATCA
AACAAATCCAGTTTACAGGTTATCCCTTCCTTGTGACAGGGATGAAAAGG
ATGGAATGCTCTCACGGTGTTGATCGTGATAAAGAAAGGAAACTGAAAAG
AAAACTTGAAAACAGTACAGTAAATTGTATTACTTTCTTTTTAAAGTTCA
TCACTTTCAGATATATTTCAAATACTTGTTTTAAGATAAATAGGATTTAA
TCCAGGCATCTATAAAACTTATGACTCCATACATTTGTGAAAAAAGGAAT
TGTATGGTAAGATGCTGGTGTAATAACTATGTCATTATTAAATCTCCCTT
TTATTCATTTTGTTGAAACATTTTTGAAGATTTCAATTTTTTCTCTTCTA
CGTTTTAGGAAGAAGAATATCAACAACGGAAATCTCGCAGTGGAAGAATT
TCAAAGAAAATGGGTTGCCCAGCATCGATCCTTTTGAGAGATATTATATT
TTTCAATGATGACAAGGTTAAAATTTTGTGTGTTATTCTAGATAGAATAG
AGTCAATATTTCATGGGGTAAGCCCAGTAACCTAATAATTTTTTTCAATA
CTTTTTAGTTGTATTAGGGCCACGGCTATTTAGCTCAGCCATAAATTAAT
TGAATGATGGATTGGAAGGATGCCCAATTGAAACATGCAAAGTTATAAAA
AAGCAATTAATAGGATTTTTAAAGATGGCTCTATATGACCAAGCTCGATC
TGGTAGGTAGGTATGATTGAGATAGTTCACCACTGTCCGTCTCTATTACT
TTGTTGTTCATCTTCTTTAATAATAGATAGAAGAGAATATCAAATATCAA
AAGTCCAAAGCCATTAGTTGCATCAGACAGAAAATAGATGAAGGGACAAT
CCATTTCACGCGAAGGATACTGGTGAAGTTTCCAGATCCTAACTCACATG
AGGGACATTCAACAGACGAGGTATGTTTTGAGTTTTTTAGTAACTTCATA
ATGTGATGAACATGGGGGCTAGAATAGACAAAGGATCAGAGAAAATTTTA
TGACTTTATAATAACAAGGTTGGGGATTTGTACTTTGTGTATACCAAAAT
GAAGTCAATTTAGACTAAGATTGGGCTTAAGTTTTTAAAGCAAAGAAAAA
AAGTACTTTCTTTAGACTTTGACTTGATCTTTAAAATAAGTACGGGAGTT
GGCAGTAATAATATAACAACTAACGAGCATTATTTTAAAAGCTGCTAAAA
TTTTGTCTCGTATATTTAAAGCTTTTTTATGTGATGTTTAGTCTGCTGGT
TCATTACAAAGACTGGATAAAAGTATAATAGAGAAAATTCAAGAACTTGT
TATACATGGCATAGATGACATAAATGAGCTTGAAAATTTATTACATGAAT
ATGTGGCTAAGCTCTTTCACGGTGACATTCCTCCAATAACATGTAGGAAA
TTCTTTCCTGAACCTAAAGATATAAGAAATCATGTGTATCGAATTAAAGC
ACAAATGAATACAACAAGCAACTCTCATCCTGTTGGAAACTCTACCAAAG
TTTGTGCACCAAAGAAGAAGGTGTCACTTTCAACAACATCTAACAGTCAA
CAAACAGCTTGTGGTACTAATTTAACCATGAATAACCACCATCAATTTAT
CACAGATAAACGTGAAAAAGTTAGATTCTTGTGCAACGAGGTTGAAAGTT
TACTCGATACGTGTGATCCAAAAGTTTTGGATGACTTGGAGGAGAGATTA
CGACAGATTCGAGATTCAATGGTACCTGCTTGCATCAGCGAACAAGATGT
GGTGTCGTCCAAAGATGAATAGTTTGATCATGATTTGATATTTGTAACCT
TTGTAAAAATGTATATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00005900-exon-sc0000061-1575043694:206260..206321 | TCONS_00005900-exon-sc0000061-1575043694:206260..206321 | Clytia hemisphaerica | exon |
TCONS_00005900-exon-sc0000061-1575043694:205674..205802 | TCONS_00005900-exon-sc0000061-1575043694:205674..205802 | Clytia hemisphaerica | exon |
TCONS_00005900-exon-sc0000061-1575043694:204953..205131 | TCONS_00005900-exon-sc0000061-1575043694:204953..205131 | Clytia hemisphaerica | exon |
TCONS_00005900-exon-sc0000061-1575043694:204152..204713 | TCONS_00005900-exon-sc0000061-1575043694:204152..204713 | Clytia hemisphaerica | exon |
TCONS_00005900-exon-sc0000061-1575043694:203255..203830 | TCONS_00005900-exon-sc0000061-1575043694:203255..203830 | Clytia hemisphaerica | exon |
TCONS_00005900-exon-sc0000061-1510915933:206260..206321 | TCONS_00005900-exon-sc0000061-1510915933:206260..206321 | Clytia hemisphaerica | exon |
TCONS_00005900-exon-sc0000061-1510915933:205674..205802 | TCONS_00005900-exon-sc0000061-1510915933:205674..205802 | Clytia hemisphaerica | exon |
TCONS_00005900-exon-sc0000061-1510915933:204953..205131 | TCONS_00005900-exon-sc0000061-1510915933:204953..205131 | Clytia hemisphaerica | exon |
TCONS_00005900-exon-sc0000061-1510915933:204152..204713 | TCONS_00005900-exon-sc0000061-1510915933:204152..204713 | Clytia hemisphaerica | exon |
TCONS_00005900-exon-sc0000061-1510915933:203255..203830 | TCONS_00005900-exon-sc0000061-1510915933:203255..203830 | Clytia hemisphaerica | exon |
TCONS_00005900-exon-sc0000061-1491911889:206260..206321 | TCONS_00005900-exon-sc0000061-1491911889:206260..206321 | Clytia hemisphaerica | exon |
TCONS_00005900-exon-sc0000061-1491911889:205674..205802 | TCONS_00005900-exon-sc0000061-1491911889:205674..205802 | Clytia hemisphaerica | exon |
TCONS_00005900-exon-sc0000061-1491911889:204953..205131 | TCONS_00005900-exon-sc0000061-1491911889:204953..205131 | Clytia hemisphaerica | exon |
TCONS_00005900-exon-sc0000061-1491911889:204152..204713 | TCONS_00005900-exon-sc0000061-1491911889:204152..204713 | Clytia hemisphaerica | exon |
TCONS_00005900-exon-sc0000061-1491911889:203255..203830 | TCONS_00005900-exon-sc0000061-1491911889:203255..203830 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000061 | supercontig | sc0000061:203255..206321 - |
Blast
The following BLAST results are available for this feature:
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