Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005898 ID=TCONS_00005898|Name=TCONS_00005898|organism=Clytia hemisphaerica|type=transcript|length=1051bpRun BLAST on NCBI protein sequence of TCONS_00005898-protein >TCONS_00005898-protein ID=TCONS_00005898-protein|Name=TCONS_00005898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp MACISTNGSDLLAISLKNKLVIFRNDETILSYTHTPPVKPTDKEKKEDSERun BLAST on NCBI transcript from alignment at sc0000061:198564..203075- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005898 ID=TCONS_00005898|Name=TCONS_00005898|organism=Clytia hemisphaerica|type=transcript|length=4512bp|location=Sequence derived from alignment at sc0000061:198564..203075- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000061:198564..203075- >TCONS_00005898 ID=TCONS_00005898|Name=TCONS_00005898|organism=Clytia hemisphaerica|type=CDS|length=8667bp|location=Sequence derived from alignment at sc0000061:198564..203075- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005898 vs. Swiss-Prot (Human)
Match: WDR4 (tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 OS=Homo sapiens GN=WDR4 PE=1 SV=2) HSP 1 Score: 120.939 bits (302), Expect = 1.178e-30 Identity = 75/250 (30.00%), Postives = 132/250 (52.80%), Query Frame = 3 Query: 315 SECQCYFGAVTEDKKLLVWNVEATKCTLLMTLEFPKRPTSLKFLKNEDSVLVSDKYGDIYKASLTSEEQTPKLILGHLSMVLDXXXXXXDKFIISADRDEKIRISHHPNAYNIHNYCLGHKNLVSFIENIGN--NRLLSISADKTIKLWNYYDGKELSSLDMKECTE-------KEFVPTK--FVTCDNSVLVI--GEQLRGVVHLEINEDNLKYIRLIELDIQPVDICCTDCGKVYMLCASPDQPLKVF 1025 S+ YF + K+L+++ + +C + T+ +R T+L F+ +E+ VLV+DK GD+Y S+ +L LGHLSM+LD+ + +D+FI++ADRDEKIR+S ++I ++CLGH VS I + LLS S D T++LW Y G++L + E ++F ++ F +N V ++ G + + L+ L Y + + Q D+ + +++L + PL ++ Sbjct: 70 SKSGSYFALTDDSKRLILFRTKPWQCLSVRTVA--RRCTALTFIASEEKVLVADKSGDVYSFSVLEPHGCGRLELGHLSMLLDVAVSPDDRFILTADRDEKIRVSWAAAPHSIESFCLGHTEFVSRISVVPTQPGLLLSSSGDGTLRLWEYRSGRQLHCCHLASLQELVDPQAPQKFAASRIAFWCQENCVALLCDGTPVVYIFQLDARRQQLVYRQQLAFQHQVWDVAFEETQGLWVLQDCQEAPLVLY 317 The following BLAST results are available for this feature:
BLAST of TCONS_00005898 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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