TCONS_00005898 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005898
Unique NameTCONS_00005898
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1051

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005898 ID=TCONS_00005898|Name=TCONS_00005898|organism=Clytia hemisphaerica|type=transcript|length=1051bp
CTAAGCCTGTAAGTTGTATATCTTATTTTCCTTTtagtttttgataaaaa
gattcAAGGATCAAGgaattataaaataataaaaatatggCTTGTATTTC
AACCAACGGATCAGATCTACTTGCAAtcagtttgaaaaataaactcgTCA
TCTTCAGGAATGACGAGACGATTCTCAGTTACACCCATACACCACCAGTA
AAACCCACAGACAAGGAAAAGAAAGAAGACAGCGAGGAGAAAAAAGAGAG
CAAAACAGCACAGCCAACACCTGCAACATCTTTTGATTGTCATCAATTTT
CCTCTAAAAGAAAATCAGAATGTCAATGTTACTTTGGAGCTGTCACTGAA
GATAAAAAACTACTAGTTTGGAATGTCGAAGCAACCAAATGTACTTTGCT
AATGACCTTAGAATTTCCAAAACGACCAACATCGCTGAAGTTTCTGAAGA
ATGAAGACTCTGTACTGGTTTCTGATAAATATGGGGATATCTACAAaGCT
TCCTTAACTTCTGAAGAGCAAACACCGAAACTCATCCTTGGTCATTTATC
CATGGTTCTTGATATTGAAATAATTGAAGAGGACAAATTCATCATCAGTG
CAGATCGTGATGAAAAGATCCGCATCAGCCATCACCCAAACGCTTATAAT
ATACATAATTATTGTCTAGGTCATAAAAATTTGGTATCTTTCATCGAGAA
CATTGGGAATAATAGACTACTTTCTATATCTGCAGATAAAACCATCAAAT
TATGGAACTACTACGATGGAAAGGAACTATCTTCTTTGGATATGAAAGAG
TGCACTGAAAAGGAGTTTGTACCAACGAAATTTGTGACGTGTGATAACTC
TGTCCTAGTTATTGGAGAACAGCTTCGAGGCGTTGTTCATTTAGAAATCA
ACGAAGACAACCTGAAATACATTCGACTGATTGAACTAGATATACAACCT
GTCGATATTTGTTGCACGGACTGCGGAAAAGTATACATGTTATGTGCAAG
TCCTGATCAACCTTTAAAAGTCTTCACAAAATCTAACAATGTAAGTTTTC
C
Run BLAST on NCBI

protein sequence of TCONS_00005898-protein

>TCONS_00005898-protein ID=TCONS_00005898-protein|Name=TCONS_00005898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
MACISTNGSDLLAISLKNKLVIFRNDETILSYTHTPPVKPTDKEKKEDSE
EKKESKTAQPTPATSFDCHQFSSKRKSECQCYFGAVTEDKKLLVWNVEAT
KCTLLMTLEFPKRPTSLKFLKNEDSVLVSDKYGDIYKASLTSEEQTPKLI
LGHLSMVLDIEIIEEDKFIISADRDEKIRISHHPNAYNIHNYCLGHKNLV
SFIENIGNNRLLSISADKTIKLWNYYDGKELSSLDMKECTEKEFVPTKFV
TCDNSVLVIGEQLRGVVHLEINEDNLKYIRLIELDIQPVDICCTDCGKVY
MLCASPDQPLKVFTKSNNVSF
Run BLAST on NCBI

transcript from alignment at sc0000061:198564..203075-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005898 ID=TCONS_00005898|Name=TCONS_00005898|organism=Clytia hemisphaerica|type=transcript|length=4512bp|location=Sequence derived from alignment at sc0000061:198564..203075- (Clytia hemisphaerica)
CTAAGCCTGTAAGTTGTATATCTTATTTTCCTTTTAGTTTTTGATAAAAA GATTCAAGGATCAAGGAATTATAAAATAATAAAAATATGGCTTGTATTTC AACCAACGGATCAGATCTACTTGCAATCAGTTTGAAAAATAAACTCGTCA TCTTCAGGTATTGACTTTATACACTTTGTGGTTTTCAATAGTTTCATTGA CAACCCATAAGTCTTACTTTGTTTGGTCTCTCAGATGACCTATAATAAAA TAAGAATATGGATTACCTATTCGCCCAGGGAAAATGTGCAAGACCTACTA CATACTGTCGTTAATCCAGTTAAAATTTACGTCTTGGTACGACCAGATGA ATAATAAAATTCTACCTAAAGATTCCTTATCCATAGTCTGAAACCAAAAC CTGGATCATGAAATAAATATGTGATTCCGATTACATGCTTTATGTGGCTA TCCCTTTAAAACCGACTTCAAAAATCTATATTTCAGGAATGACGAGACGA TTCTCAGTTACACCCATACACCACCAGTAAAACCCACAGACAAGGAAAAG AAAGAAGACAGCGAGGAGAAAAAAGAGAGCAAAACAGCACAGCCAACACC TGCAACATCTTTTGATTGTCATCAATTTTCCTCTAAAAGAAAATCAGAAT GTCAATGTTACTTTGGAGCTGTCACTGAAGATAAAAAACTACTAGTTTGG AATGTCGAAGCAACCAAATGTACTTTGCTAATGACCTTGTGAGTAAAATT ATTTGGGTTTTGTTACTGCATATTGCTGGAGTATGTATACTATGATCTAT GTATACTAATTCTGTAATCATGGCTGGAACCCCTCCCCCCTGGCCTGAGG GGGGGGGCTAAAAGGTCGAGCAGCAGTTGGTACCTGATTTTAGCCTGTGG CTAGGGGGGGCTAACCATGTTAGGGGTCACCTAAATTTTTTCAGATGGAC CTGGGGGCTAGATTTTATGTTTGGTGATTGAATTTATAAGCAGCCTACCA GACCATAGGTTGGAACTTTCTCATCTTATATTTTAATCTAAGCAATAATG CTCAAAAACTGACAATTTGGTATCTAATATATTATTTGCAGTGCCGTCAG TGCCATAGCAACTGGGGGGGACCAATAATTTTTCAAAATGGTTATCTTGC AAAATGCAAAGTTTTTCTTTTTTAATTTGTCATAATTGTCTTATAAGTGC ATGTTTTGAGTGCATTTTCAAGCAATCTAGAGCTCAAATTTTCAAAATTT TCCTCCTCAGCTCAAACCATGGTTGGCCCTCGCGGTGTCACTAAACTTCA GCCCCCTTAATATGAAAATGCTTCCTACTGCACTGATCTGTAAAAATTCT TTAATCCTGATGCATTTACTTAGATAAAAATCTGTCTAGCAAGGGATCTG CACCCCTTACTTGAACCTTCAGTACTTAGCTTATCTCTTATTTCTTAGGG CATTTATTCTATTTAGCAATAAGCTAAACTAACTGTTGTATTTGTTTGAT TGTTTAAAAAGGATTTTCGAAAAAATTTGACGTGTCATTGGCTTAGAGGT CACCTAAAATATTTGGCGACCAGGGGTTACCTAAATCTTAGGGGTCACCT GAATTCTTAGGGGGCACCTAAAACCTGCTGCCAAGCCATGTGTAATGTTT CTAAAAGCCTCTTTTCTTTTGTAGAGAATTTCCAAAACGACCAACATCGC TGAAGTTTCTGAAGAATGAAGACTCTGTACTGGTTTCTGATAAATATGGG GATATCTACAAGTAAGAAGCCGTCCACATGATTGTTTTGTAAACTTTTCT CCTAACTTTGTCCTTTCATTGTGCTATTACTATAAATCAATATCCATTGA GATGGATGAAACTTAAGTTGGTAGCAAGACAAGACCCCGACGAGGCTGAG TGAAACTCACTCATTACAATTTTTAGACGGCTTTTCAGAATAAAGTGAAT GCAGGGGTGGAGTGCCGCACTTATTCACTAATCTCAACAGCTTTCCGCTA CTAGCCGTCTTGACCAGATTTCCCAATCTAATCTAATCTACTACTCTTCT CTTGCGTAATGTTTCATTTTTATTAGAGCTTCCTTAACTTCTGAAGAGCA AACACCGAAACTCATCCTTGGTCATTTATCCATGGTTCTTGATATTGTAA GTTTGTGCTTTGAGATTTTAGCCTTCGATAGATATAGATAATAATCTTCA CTATTCAGAGAATTATATTAAGTAGGTTTATTGACCTCAACCAACCTAAT AATGAGATATTATTATTATCCAATCTTCGTCTTTCATCCAGTCGTCAGAA AGGATCGGTGTTTTTGACGGTCTTTGTTCTAAGTTTTCGAACTAGGCGAA GGCTTGTTCTAGGGCTTCCTTACACGCCAAAGAAAGTCACCTTTATTACC TATATTCATTTTCTTTGCATTTGGTCATGTTTGATACTTAAAATCAAGCT GGGTACCTTCTATTCATGATATGCACCACTGGAGAGTCTTCTGAGAACTT TTAAAAATTTCCGTCCATAGAAAAAGTGACGGATTGGGTGGAACAAAAGC AGAAAAGTTGCATAATTTCGTGAAGTCATTGCAGTGGTGCATATCATGAA TTGCTATTTTGTGTTCGATTTCGTGCTGAGTAAACAAATATCCTTGAAAT TTCTTTCTCCAATCTTGCTCCACATCCTTGTCAATTCAAAAACCTTGTTT TGAAATGCTCAAGTAAGCAAACAATAAAGCCGTCAATTGGAAGAATTACA TCATCATATCATATCATCATAGATGTATGAATCCACTGGTTTAACCAGTA GATTTTCATGTGAATCCAGTGAGATGTTATACGAGAAATTGGGTACATAA GATGAAAGAACAAATGTAAAAGCTTTGTCAATATCGTTTATTTCTTTGTT TTCTTTCAGGAAATAATTGAAGAGGACAAATTCATCATCAGTGCAGATCG TGATGAAAAGATCCGCATCAGCCATCACCCAAACGCTTATAATATACATA ATTATTGTCTAGGTCATAAAAAGTAAGTGATGATTTGTTAATTATTTCTC TTCGATCAGCTTAAATACAAAATTAATAATCATTCGTTATCGTAAATACG GTGCCGTAAATATGTCATGAAAGCTTTTTGGATTATTTTCAAAGAAGTTT GATAAAGAGTTTTCTTCTAATTTTTTTTTTCATTTTTCCTCGTTATTATC GCAGTTTGGTATCTTTCATCGAGAACATTGGGAATAATAGACTACTTTCT ATATCTGCAGTAAGTACTTTGTCTCGTAAATGCAATATTATTGGTCAATT TTTTTTCTGGAAAAGTGTTTGGAAAAATCCTGTCAAATGATATACGTTAA TTTCTTCCCAATTTGATTTTTCCATCAAGTCTTGTCGAAAAAAACGGTCA GTAATAAGATATAGTGGGTTAGTGATAAGCTAGAACTGTAGCTGTAATTT TACACTTTTTAACATTTAATTTATAATCGATGCAAATTTACTGGCGAATA GACCTTATCGGAGTTTTTGATATTTCTAAAAAAGCGATCCATTGTGGGAT TGTTTCGAGTGTATTACAATAGAGATCTCTCGAGGAATTCCTAAGAGATT TCTATTGTAATACACTCGAAACAATCCCACAATGCATCGCTTTTTTAGAA ATATCAAAAACTCAGATAAGGTCTATTATCAATGTGGTAGTGAACTCGTG CTAATTCGAACTTCTATTATCCGAATCTTTCTATAATTCGAAATAGTTCT CAGTTCAAGGGGAAAGCCTCGTAAAATACTTTCTACAAAAATTTTGGTCC CTTGAAAATCAAATTAGAGAGAGTCAATTATAGCTGATGATTTATTTGCA CAGCTTCCTCTTTTAGGATAAAACCATCAAATTATGGAACTACTACGATG GAAAGGAACTATCTTCTTTGGATATGAAAGAGTGCACTGAAAAGGTTTAC CACATTGTTTTAATTGGTTCTCACTATGCAAAAGACAAAAGAACCTTAAC CATTTAATATAAAGAGTTCCTTGTGATCATCTTAAACAGAAATATTTTCA AGTGCAACAGCTTTAACAGATATTGCTTTATCTTTTATAGGAGTTTGTAC CAACGAAATTTGTGACGTGTGATAACTCTGTCCTAGTTATTGGAGAACAG TAAGTATAATAAAGAGGTTTGATTTTAATAACATTCCCGTCATGGCGAAA ATCTTAGCAAACACTCCCTATAATTCGCAACCTTCCATATTTGGAAAGAT TTTTTTTGTGAACATGCATTATTTGACACCTAGACTACTTTCCCTGATAG TTTTGTGAATTAATACTTCTTTTGTTTTCTAGGCTTCGAGGCGTTGTTCA TTTAGAAATCAACGAAGACAACCTGAAATACATTCGACTGATTGAACTAG ATATACAACCTGTCGATATTTGTTGCACGGACTGCGGAAAAGTATACATG TTATGTGCAAGTCCTGATCAACCTTTAAAAGTCTTCACAAAATCTAACAA TGTAAGTTTTCC

Coding sequence (CDS) from alignment at sc0000061:198564..203075-

>TCONS_00005898 ID=TCONS_00005898|Name=TCONS_00005898|organism=Clytia hemisphaerica|type=CDS|length=8667bp|location=Sequence derived from alignment at sc0000061:198564..203075- (Clytia hemisphaerica)
GCTTCGAGGCGTTGTTCATTTAGAAATCAACGAAGACAACCTGAAATACA
TTCGACTGATTGAACTAGATATACAACCTGTCGATATTTGTTGCACGGAC
TGCGGAAAAGTATACATGTTATGTGCAAGTCCTGATCAACCTTTAAAAGT
CTTCACAAAATCTAACAATGTAAGTTTTGAGTTTGTACCAACGAAATTTG
TGACGTGTGATAACTCTGTCCTAGTTATTGGAGAACAGATAAAACCATCA
AATTATGGAACTACTACGATGGAAAGGAACTATCTTCTTTGGATATGAAA
GAGTGCACTGAAAAGTTTGGTATCTTTCATCGAGAACATTGGGAATAATA
GACTACTTTCTATATCTGCAGAAATAATTGAAGAGGACAAATTCATCATC
AGTGCAGATCGTGATGAAAAGATCCGCATCAGCCATCACCCAAACGCTTA
TAATATACATAATTATTGTCTAGGTCATAAAAAAGCTTCCTTAACTTCTG
AAGAGCAAACACCGAAACTCATCCTTGGTCATTTATCCATGGTTCTTGAT
ATTAGAATTTCCAAAACGACCAACATCGCTGAAGTTTCTGAAGAATGAAG
ACTCTGTACTGGTTTCTGATAAATATGGGGATATCTACAAGAATGACGAG
ACGATTCTCAGTTACACCCATACACCACCAGTAAAACCCACAGACAAGGA
AAAGAAAGAAGACAGCGAGGAGAAAAAAGAGAGCAAAACAGCACAGCCAA
CACCTGCAACATCTTTTGATTGTCATCAATTTTCCTCTAAAAGAAAATCA
GAATGTCAATGTTACTTTGGAGCTGTCACTGAAGATAAAAAACTACTAGT
TTGGAATGTCGAAGCAACCAAATGTACTTTGCTAATGACCTTATGGCTTG
TATTTCAACCAACGGATCAGATCTACTTGCAATCAGTTTGAAAAATAAAC
TCGTCATCTTCAGGCTTCGAGGCGTTGTTCATTTAGAAATCAACGAAGAC
AACCTGAAATACATTCGACTGATTGAACTAGATATACAACCTGTCGATAT
TTGTTGCACGGACTGCGGAAAAGTATACATGTTATGTGCAAGTCCTGATC
AACCTTTAAAAGTCTTCACAAAATCTAACAATGTAAGTTTTGAGTTTGTA
CCAACGAAATTTGTGACGTGTGATAACTCTGTCCTAGTTATTGGAGAACA
GATAAAACCATCAAATTATGGAACTACTACGATGGAAAGGAACTATCTTC
TTTGGATATGAAAGAGTGCACTGAAAAGTTTGGTATCTTTCATCGAGAAC
ATTGGGAATAATAGACTACTTTCTATATCTGCAGAAATAATTGAAGAGGA
CAAATTCATCATCAGTGCAGATCGTGATGAAAAGATCCGCATCAGCCATC
ACCCAAACGCTTATAATATACATAATTATTGTCTAGGTCATAAAAAAGCT
TCCTTAACTTCTGAAGAGCAAACACCGAAACTCATCCTTGGTCATTTATC
CATGGTTCTTGATATTAGAATTTCCAAAACGACCAACATCGCTGAAGTTT
CTGAAGAATGAAGACTCTGTACTGGTTTCTGATAAATATGGGGATATCTA
CAAGAATGACGAGACGATTCTCAGTTACACCCATACACCACCAGTAAAAC
CCACAGACAAGGAAAAGAAAGAAGACAGCGAGGAGAAAAAAGAGAGCAAA
ACAGCACAGCCAACACCTGCAACATCTTTTGATTGTCATCAATTTTCCTC
TAAAAGAAAATCAGAATGTCAATGTTACTTTGGAGCTGTCACTGAAGATA
AAAAACTACTAGTTTGGAATGTCGAAGCAACCAAATGTACTTTGCTAATG
ACCTTATGGCTTGTATTTCAACCAACGGATCAGATCTACTTGCAATCAGT
TTGAAAAATAAACTCGTCATCTTCAGGCTTCGAGGCGTTGTTCATTTAGA
AATCAACGAAGACAACCTGAAATACATTCGACTGATTGAACTAGATATAC
AACCTGTCGATATTTGTTGCACGGACTGCGGAAAAGTATACATGTTATGT
GCAAGTCCTGATCAACCTTTAAAAGTCTTCACAAAATCTAACAATGTAAG
TTTTGAGTTTGTACCAACGAAATTTGTGACGTGTGATAACTCTGTCCTAG
TTATTGGAGAACAGATAAAACCATCAAATTATGGAACTACTACGATGGAA
AGGAACTATCTTCTTTGGATATGAAAGAGTGCACTGAAAAGTTTGGTATC
TTTCATCGAGAACATTGGGAATAATAGACTACTTTCTATATCTGCAGAAA
TAATTGAAGAGGACAAATTCATCATCAGTGCAGATCGTGATGAAAAGATC
CGCATCAGCCATCACCCAAACGCTTATAATATACATAATTATTGTCTAGG
TCATAAAAAAGCTTCCTTAACTTCTGAAGAGCAAACACCGAAACTCATCC
TTGGTCATTTATCCATGGTTCTTGATATTAGAATTTCCAAAACGACCAAC
ATCGCTGAAGTTTCTGAAGAATGAAGACTCTGTACTGGTTTCTGATAAAT
ATGGGGATATCTACAAGAATGACGAGACGATTCTCAGTTACACCCATACA
CCACCAGTAAAACCCACAGACAAGGAAAAGAAAGAAGACAGCGAGGAGAA
AAAAGAGAGCAAAACAGCACAGCCAACACCTGCAACATCTTTTGATTGTC
ATCAATTTTCCTCTAAAAGAAAATCAGAATGTCAATGTTACTTTGGAGCT
GTCACTGAAGATAAAAAACTACTAGTTTGGAATGTCGAAGCAACCAAATG
TACTTTGCTAATGACCTTATGGCTTGTATTTCAACCAACGGATCAGATCT
ACTTGCAATCAGTTTGAAAAATAAACTCGTCATCTTCAGGCTTCGAGGCG
TTGTTCATTTAGAAATCAACGAAGACAACCTGAAATACATTCGACTGATT
GAACTAGATATACAACCTGTCGATATTTGTTGCACGGACTGCGGAAAAGT
ATACATGTTATGTGCAAGTCCTGATCAACCTTTAAAAGTCTTCACAAAAT
CTAACAATGTAAGTTTTGAGTTTGTACCAACGAAATTTGTGACGTGTGAT
AACTCTGTCCTAGTTATTGGAGAACAGATAAAACCATCAAATTATGGAAC
TACTACGATGGAAAGGAACTATCTTCTTTGGATATGAAAGAGTGCACTGA
AAAGTTTGGTATCTTTCATCGAGAACATTGGGAATAATAGACTACTTTCT
ATATCTGCAGAAATAATTGAAGAGGACAAATTCATCATCAGTGCAGATCG
TGATGAAAAGATCCGCATCAGCCATCACCCAAACGCTTATAATATACATA
ATTATTGTCTAGGTCATAAAAAAGCTTCCTTAACTTCTGAAGAGCAAACA
CCGAAACTCATCCTTGGTCATTTATCCATGGTTCTTGATATTAGAATTTC
CAAAACGACCAACATCGCTGAAGTTTCTGAAGAATGAAGACTCTGTACTG
GTTTCTGATAAATATGGGGATATCTACAAGAATGACGAGACGATTCTCAG
TTACACCCATACACCACCAGTAAAACCCACAGACAAGGAAAAGAAAGAAG
ACAGCGAGGAGAAAAAAGAGAGCAAAACAGCACAGCCAACACCTGCAACA
TCTTTTGATTGTCATCAATTTTCCTCTAAAAGAAAATCAGAATGTCAATG
TTACTTTGGAGCTGTCACTGAAGATAAAAAACTACTAGTTTGGAATGTCG
AAGCAACCAAATGTACTTTGCTAATGACCTTATGGCTTGTATTTCAACCA
ACGGATCAGATCTACTTGCAATCAGTTTGAAAAATAAACTCGTCATCTTC
AGGCTTCGAGGCGTTGTTCATTTAGAAATCAACGAAGACAACCTGAAATA
CATTCGACTGATTGAACTAGATATACAACCTGTCGATATTTGTTGCACGG
ACTGCGGAAAAGTATACATGTTATGTGCAAGTCCTGATCAACCTTTAAAA
GTCTTCACAAAATCTAACAATGTAAGTTTTGAGTTTGTACCAACGAAATT
TGTGACGTGTGATAACTCTGTCCTAGTTATTGGAGAACAGATAAAACCAT
CAAATTATGGAACTACTACGATGGAAAGGAACTATCTTCTTTGGATATGA
AAGAGTGCACTGAAAAGTTTGGTATCTTTCATCGAGAACATTGGGAATAA
TAGACTACTTTCTATATCTGCAGAAATAATTGAAGAGGACAAATTCATCA
TCAGTGCAGATCGTGATGAAAAGATCCGCATCAGCCATCACCCAAACGCT
TATAATATACATAATTATTGTCTAGGTCATAAAAAAGCTTCCTTAACTTC
TGAAGAGCAAACACCGAAACTCATCCTTGGTCATTTATCCATGGTTCTTG
ATATTAGAATTTCCAAAACGACCAACATCGCTGAAGTTTCTGAAGAATGA
AGACTCTGTACTGGTTTCTGATAAATATGGGGATATCTACAAGAATGACG
AGACGATTCTCAGTTACACCCATACACCACCAGTAAAACCCACAGACAAG
GAAAAGAAAGAAGACAGCGAGGAGAAAAAAGAGAGCAAAACAGCACAGCC
AACACCTGCAACATCTTTTGATTGTCATCAATTTTCCTCTAAAAGAAAAT
CAGAATGTCAATGTTACTTTGGAGCTGTCACTGAAGATAAAAAACTACTA
GTTTGGAATGTCGAAGCAACCAAATGTACTTTGCTAATGACCTTATGGCT
TGTATTTCAACCAACGGATCAGATCTACTTGCAATCAGTTTGAAAAATAA
ACTCGTCATCTTCAGGCTTCGAGGCGTTGTTCATTTAGAAATCAACGAAG
ACAACCTGAAATACATTCGACTGATTGAACTAGATATACAACCTGTCGAT
ATTTGTTGCACGGACTGCGGAAAAGTATACATGTTATGTGCAAGTCCTGA
TCAACCTTTAAAAGTCTTCACAAAATCTAACAATGTAAGTTTTGAGTTTG
TACCAACGAAATTTGTGACGTGTGATAACTCTGTCCTAGTTATTGGAGAA
CAGATAAAACCATCAAATTATGGAACTACTACGATGGAAAGGAACTATCT
TCTTTGGATATGAAAGAGTGCACTGAAAAGTTTGGTATCTTTCATCGAGA
ACATTGGGAATAATAGACTACTTTCTATATCTGCAGAAATAATTGAAGAG
GACAAATTCATCATCAGTGCAGATCGTGATGAAAAGATCCGCATCAGCCA
TCACCCAAACGCTTATAATATACATAATTATTGTCTAGGTCATAAAAAAG
CTTCCTTAACTTCTGAAGAGCAAACACCGAAACTCATCCTTGGTCATTTA
TCCATGGTTCTTGATATTAGAATTTCCAAAACGACCAACATCGCTGAAGT
TTCTGAAGAATGAAGACTCTGTACTGGTTTCTGATAAATATGGGGATATC
TACAAGAATGACGAGACGATTCTCAGTTACACCCATACACCACCAGTAAA
ACCCACAGACAAGGAAAAGAAAGAAGACAGCGAGGAGAAAAAAGAGAGCA
AAACAGCACAGCCAACACCTGCAACATCTTTTGATTGTCATCAATTTTCC
TCTAAAAGAAAATCAGAATGTCAATGTTACTTTGGAGCTGTCACTGAAGA
TAAAAAACTACTAGTTTGGAATGTCGAAGCAACCAAATGTACTTTGCTAA
TGACCTTATGGCTTGTATTTCAACCAACGGATCAGATCTACTTGCAATCA
GTTTGAAAAATAAACTCGTCATCTTCAGGCTTCGAGGCGTTGTTCATTTA
GAAATCAACGAAGACAACCTGAAATACATTCGACTGATTGAACTAGATAT
ACAACCTGTCGATATTTGTTGCACGGACTGCGGAAAAGTATACATGTTAT
GTGCAAGTCCTGATCAACCTTTAAAAGTCTTCACAAAATCTAACAATGTA
AGTTTTGAGTTTGTACCAACGAAATTTGTGACGTGTGATAACTCTGTCCT
AGTTATTGGAGAACAGATAAAACCATCAAATTATGGAACTACTACGATGG
AAAGGAACTATCTTCTTTGGATATGAAAGAGTGCACTGAAAAGTTTGGTA
TCTTTCATCGAGAACATTGGGAATAATAGACTACTTTCTATATCTGCAGA
AATAATTGAAGAGGACAAATTCATCATCAGTGCAGATCGTGATGAAAAGA
TCCGCATCAGCCATCACCCAAACGCTTATAATATACATAATTATTGTCTA
GGTCATAAAAAAGCTTCCTTAACTTCTGAAGAGCAAACACCGAAACTCAT
CCTTGGTCATTTATCCATGGTTCTTGATATTAGAATTTCCAAAACGACCA
ACATCGCTGAAGTTTCTGAAGAATGAAGACTCTGTACTGGTTTCTGATAA
ATATGGGGATATCTACAAGAATGACGAGACGATTCTCAGTTACACCCATA
CACCACCAGTAAAACCCACAGACAAGGAAAAGAAAGAAGACAGCGAGGAG
AAAAAAGAGAGCAAAACAGCACAGCCAACACCTGCAACATCTTTTGATTG
TCATCAATTTTCCTCTAAAAGAAAATCAGAATGTCAATGTTACTTTGGAG
CTGTCACTGAAGATAAAAAACTACTAGTTTGGAATGTCGAAGCAACCAAA
TGTACTTTGCTAATGACCTTATGGCTTGTATTTCAACCAACGGATCAGAT
CTACTTGCAATCAGTTTGAAAAATAAACTCGTCATCTTCAGGCTTCGAGG
CGTTGTTCATTTAGAAATCAACGAAGACAACCTGAAATACATTCGACTGA
TTGAACTAGATATACAACCTGTCGATATTTGTTGCACGGACTGCGGAAAA
GTATACATGTTATGTGCAAGTCCTGATCAACCTTTAAAAGTCTTCACAAA
ATCTAACAATGTAAGTTTTGAGTTTGTACCAACGAAATTTGTGACGTGTG
ATAACTCTGTCCTAGTTATTGGAGAACAGATAAAACCATCAAATTATGGA
ACTACTACGATGGAAAGGAACTATCTTCTTTGGATATGAAAGAGTGCACT
GAAAAGTTTGGTATCTTTCATCGAGAACATTGGGAATAATAGACTACTTT
CTATATCTGCAGAAATAATTGAAGAGGACAAATTCATCATCAGTGCAGAT
CGTGATGAAAAGATCCGCATCAGCCATCACCCAAACGCTTATAATATACA
TAATTATTGTCTAGGTCATAAAAAAGCTTCCTTAACTTCTGAAGAGCAAA
CACCGAAACTCATCCTTGGTCATTTATCCATGGTTCTTGATATTAGAATT
TCCAAAACGACCAACATCGCTGAAGTTTCTGAAGAATGAAGACTCTGTAC
TGGTTTCTGATAAATATGGGGATATCTACAAGAATGACGAGACGATTCTC
AGTTACACCCATACACCACCAGTAAAACCCACAGACAAGGAAAAGAAAGA
AGACAGCGAGGAGAAAAAAGAGAGCAAAACAGCACAGCCAACACCTGCAA
CATCTTTTGATTGTCATCAATTTTCCTCTAAAAGAAAATCAGAATGTCAA
TGTTACTTTGGAGCTGTCACTGAAGATAAAAAACTACTAGTTTGGAATGT
CGAAGCAACCAAATGTACTTTGCTAATGACCTTATGGCTTGTATTTCAAC
CAACGGATCAGATCTACTTGCAATCAGTTTGAAAAATAAACTCGTCATCT
TCAGGCTTCGAGGCGTTGTTCATTTAGAAATCAACGAAGACAACCTGAAA
TACATTCGACTGATTGAACTAGATATACAACCTGTCGATATTTGTTGCAC
GGACTGCGGAAAAGTATACATGTTATGTGCAAGTCCTGATCAACCTTTAA
AAGTCTTCACAAAATCTAACAATGTAAGTTTTGAGTTTGTACCAACGAAA
TTTGTGACGTGTGATAACTCTGTCCTAGTTATTGGAGAACAGATAAAACC
ATCAAATTATGGAACTACTACGATGGAAAGGAACTATCTTCTTTGGATAT
GAAAGAGTGCACTGAAAAGTTTGGTATCTTTCATCGAGAACATTGGGAAT
AATAGACTACTTTCTATATCTGCAGAAATAATTGAAGAGGACAAATTCAT
CATCAGTGCAGATCGTGATGAAAAGATCCGCATCAGCCATCACCCAAACG
CTTATAATATACATAATTATTGTCTAGGTCATAAAAAAGCTTCCTTAACT
TCTGAAGAGCAAACACCGAAACTCATCCTTGGTCATTTATCCATGGTTCT
TGATATTAGAATTTCCAAAACGACCAACATCGCTGAAGTTTCTGAAGAAT
GAAGACTCTGTACTGGTTTCTGATAAATATGGGGATATCTACAAGAATGA
CGAGACGATTCTCAGTTACACCCATACACCACCAGTAAAACCCACAGACA
AGGAAAAGAAAGAAGACAGCGAGGAGAAAAAAGAGAGCAAAACAGCACAG
CCAACACCTGCAACATCTTTTGATTGTCATCAATTTTCCTCTAAAAGAAA
ATCAGAATGTCAATGTTACTTTGGAGCTGTCACTGAAGATAAAAAACTAC
TAGTTTGGAATGTCGAAGCAACCAAATGTACTTTGCTAATGACCTTATGG
CTTGTATTTCAACCAACGGATCAGATCTACTTGCAATCAGTTTGAAAAAT
AAACTCGTCATCTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003364XLOC_003364Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005898-exon-sc0000061-1575043694:202919..203075TCONS_00005898-exon-sc0000061-1575043694:202919..203075Clytia hemisphaericaexon
TCONS_00005898-exon-sc0000061-1575043694:202338..202589TCONS_00005898-exon-sc0000061-1575043694:202338..202589Clytia hemisphaericaexon
TCONS_00005898-exon-sc0000061-1575043694:201315..201401TCONS_00005898-exon-sc0000061-1575043694:201315..201401Clytia hemisphaericaexon
TCONS_00005898-exon-sc0000061-1575043694:200930..200999TCONS_00005898-exon-sc0000061-1575043694:200930..200999Clytia hemisphaericaexon
TCONS_00005898-exon-sc0000061-1575043694:200054..200166TCONS_00005898-exon-sc0000061-1575043694:200054..200166Clytia hemisphaericaexon
TCONS_00005898-exon-sc0000061-1575043694:199817..199871TCONS_00005898-exon-sc0000061-1575043694:199817..199871Clytia hemisphaericaexon
TCONS_00005898-exon-sc0000061-1575043694:199132..199209TCONS_00005898-exon-sc0000061-1575043694:199132..199209Clytia hemisphaericaexon
TCONS_00005898-exon-sc0000061-1575043694:198927..198985TCONS_00005898-exon-sc0000061-1575043694:198927..198985Clytia hemisphaericaexon
TCONS_00005898-exon-sc0000061-1575043694:198564..198743TCONS_00005898-exon-sc0000061-1575043694:198564..198743Clytia hemisphaericaexon
TCONS_00005898-exon-sc0000061-1510915933:202919..203075TCONS_00005898-exon-sc0000061-1510915933:202919..203075Clytia hemisphaericaexon
TCONS_00005898-exon-sc0000061-1510915933:202338..202589TCONS_00005898-exon-sc0000061-1510915933:202338..202589Clytia hemisphaericaexon
TCONS_00005898-exon-sc0000061-1510915933:201315..201401TCONS_00005898-exon-sc0000061-1510915933:201315..201401Clytia hemisphaericaexon
TCONS_00005898-exon-sc0000061-1510915933:200930..200999TCONS_00005898-exon-sc0000061-1510915933:200930..200999Clytia hemisphaericaexon
TCONS_00005898-exon-sc0000061-1510915933:200054..200166TCONS_00005898-exon-sc0000061-1510915933:200054..200166Clytia hemisphaericaexon
TCONS_00005898-exon-sc0000061-1510915933:199817..199871TCONS_00005898-exon-sc0000061-1510915933:199817..199871Clytia hemisphaericaexon
TCONS_00005898-exon-sc0000061-1510915933:199132..199209TCONS_00005898-exon-sc0000061-1510915933:199132..199209Clytia hemisphaericaexon
TCONS_00005898-exon-sc0000061-1510915933:198927..198985TCONS_00005898-exon-sc0000061-1510915933:198927..198985Clytia hemisphaericaexon
TCONS_00005898-exon-sc0000061-1510915933:198564..198743TCONS_00005898-exon-sc0000061-1510915933:198564..198743Clytia hemisphaericaexon
TCONS_00005898-exon-sc0000061-1491911889:202919..203075TCONS_00005898-exon-sc0000061-1491911889:202919..203075Clytia hemisphaericaexon
TCONS_00005898-exon-sc0000061-1491911889:202338..202589TCONS_00005898-exon-sc0000061-1491911889:202338..202589Clytia hemisphaericaexon
TCONS_00005898-exon-sc0000061-1491911889:201315..201401TCONS_00005898-exon-sc0000061-1491911889:201315..201401Clytia hemisphaericaexon
TCONS_00005898-exon-sc0000061-1491911889:200930..200999TCONS_00005898-exon-sc0000061-1491911889:200930..200999Clytia hemisphaericaexon
TCONS_00005898-exon-sc0000061-1491911889:200054..200166TCONS_00005898-exon-sc0000061-1491911889:200054..200166Clytia hemisphaericaexon
TCONS_00005898-exon-sc0000061-1491911889:199817..199871TCONS_00005898-exon-sc0000061-1491911889:199817..199871Clytia hemisphaericaexon
TCONS_00005898-exon-sc0000061-1491911889:199132..199209TCONS_00005898-exon-sc0000061-1491911889:199132..199209Clytia hemisphaericaexon
TCONS_00005898-exon-sc0000061-1491911889:198927..198985TCONS_00005898-exon-sc0000061-1491911889:198927..198985Clytia hemisphaericaexon
TCONS_00005898-exon-sc0000061-1491911889:198564..198743TCONS_00005898-exon-sc0000061-1491911889:198564..198743Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005898-proteinTCONS_00005898-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:198564..203075 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
67.8796 61.5093 33.109 27.8646 12.8985 9.47414 16.6306 13.9465 18.3568 14.2497 15.3679 19.4748 22.3341 24.9694 27.2035 25.6759 20.5283 26.682 7.92792 7.63982 17.9657 14.8435 48.6494 41.6819 23.5241 27.9794 8.0308 7.52248 26.1893 29.6846
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom
IPR028884Trm82
IPR017986WD40_repeat_dom
IPR001680WD40_repeat
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0036265RNA (guanine-N7)-methylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0036265 RNA (guanine-N7)-methylation
molecular_function GO:0005515 protein binding
Blast
BLAST of TCONS_00005898 vs. Swiss-Prot (Human)
Match: WDR4 (tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 OS=Homo sapiens GN=WDR4 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 1.178e-30
Identity = 75/250 (30.00%), Postives = 132/250 (52.80%), Query Frame = 3
Query:  315 SECQCYFGAVTEDKKLLVWNVEATKCTLLMTLEFPKRPTSLKFLKNEDSVLVSDKYGDIYKASLTSEEQTPKLILGHLSMVLDXXXXXXDKFIISADRDEKIRISHHPNAYNIHNYCLGHKNLVSFIENIGN--NRLLSISADKTIKLWNYYDGKELSSLDMKECTE-------KEFVPTK--FVTCDNSVLVI--GEQLRGVVHLEINEDNLKYIRLIELDIQPVDICCTDCGKVYMLCASPDQPLKVF 1025
            S+   YF    + K+L+++  +  +C  + T+   +R T+L F+ +E+ VLV+DK GD+Y  S+       +L LGHLSM+LD+ +  +D+FI++ADRDEKIR+S     ++I ++CLGH   VS I  +      LLS S D T++LW Y  G++L    +    E       ++F  ++  F   +N V ++  G  +  +  L+     L Y + +    Q  D+   +   +++L    + PL ++
Sbjct:   70 SKSGSYFALTDDSKRLILFRTKPWQCLSVRTVA--RRCTALTFIASEEKVLVADKSGDVYSFSVLEPHGCGRLELGHLSMLLDVAVSPDDRFILTADRDEKIRVSWAAAPHSIESFCLGHTEFVSRISVVPTQPGLLLSSSGDGTLRLWEYRSGRQLHCCHLASLQELVDPQAPQKFAASRIAFWCQENCVALLCDGTPVVYIFQLDARRQQLVYRQQLAFQHQVWDVAFEETQGLWVLQDCQEAPLVLY 317          
The following BLAST results are available for this feature:
BLAST of TCONS_00005898 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR41.178e-3030.00tRNA (guanine-N(7)-)-methyltransferase non-catalyt... [more]
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