TCONS_00005897 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005897
Unique NameTCONS_00005897
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005897 ID=TCONS_00005897|Name=TCONS_00005897|organism=Clytia hemisphaerica|type=transcript|length=280bp
CGTACGAAGAAAAAGATGTTAGCaatttgaaaatggaaaaacTACTTGAA
TATAAAGAAGATTTTCCAACAGCCAGTATGTATATGACGGGTTTAGTAAA
GCCATTACGCGGTAAACGAGATGCCTCCTCACTCATCACACCAGAAAGTA
CAATTAATTTTGAAGCGATTTACGAAAGCAATAATAAGTTACAGAAAGTA
GATGAAGAAACAAATTGTAAAATGGGAGAAGAGTAATGTATTTTATGTTG
TTGTTCGtaaaatcaaatatattttcgTAA
Run BLAST on NCBI

transcript from alignment at sc0000061:197427..198135-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005897 ID=TCONS_00005897|Name=TCONS_00005897|organism=Clytia hemisphaerica|type=transcript|length=709bp|location=Sequence derived from alignment at sc0000061:197427..198135- (Clytia hemisphaerica)
CGTACGAAGAAAAAGATGTTAGCAATTTGAAAATGGAAAAACTACTTGAA
TATAAAGAAGGTAAGTTTAACAAATATTCCAACAAGTTTGTCAAGTTAAA
GAGGATCTTTCGTAAAACAATCATATTTGCATGACAACACTAGAAGGTTT
TGTCAAGAATACCTTTCATCAACAAATAATGGAATCGATAAAAATATTGT
TATTATGTTGCAAAAAATAAAAAAGGAGCCCACACGTCTTTTGTGAGTGA
GCCCTTCCAATTAAAGAAGTCAAGATAAATGATTTAAAGGTTTAATTTTT
AGATAAAGTGTTCCCGTTTCATATCATATTTACACATATCATTTCATATC
AGCCTATTTTTATATGACGAACTTGCTCCACATCCGTGTCGATCCAATTT
GAAAAAGCTTGTGAATTGGAAATTATGACTATGCAAACGATTTTCACTCT
TATAAAAAAGAAACCTTTTTCATAATGTTTTCTTTCCAGATTTTCCAACA
GCCAGTATGTATATGACGGGTTTAGTAAAGCCATTACGCGGTAAACGAGA
TGCCTCCTCACTCATCACACCAGAAAGTACAATTAATTTTGAAGCGATTT
ACGAAAGCAATAATAAGTTACAGAAAGTAGATGAAGAAACAAATTGTAAA
ATGGGAGAAGAGTAATGTATTTTATGTTGTTGTTCGTAAAATCAAATATA
TTTTCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003363XLOC_003363Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005897-exon-sc0000061-1575043694:198076..198135TCONS_00005897-exon-sc0000061-1575043694:198076..198135Clytia hemisphaericaexon
TCONS_00005897-exon-sc0000061-1575043694:197427..197646TCONS_00005897-exon-sc0000061-1575043694:197427..197646Clytia hemisphaericaexon
TCONS_00005897-exon-sc0000061-1510915933:198076..198135TCONS_00005897-exon-sc0000061-1510915933:198076..198135Clytia hemisphaericaexon
TCONS_00005897-exon-sc0000061-1510915933:197427..197646TCONS_00005897-exon-sc0000061-1510915933:197427..197646Clytia hemisphaericaexon
TCONS_00005897-exon-sc0000061-1491911889:198076..198135TCONS_00005897-exon-sc0000061-1491911889:198076..198135Clytia hemisphaericaexon
TCONS_00005897-exon-sc0000061-1491911889:197427..197646TCONS_00005897-exon-sc0000061-1491911889:197427..197646Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:197427..198135 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
64.2681	44.3521	31.3461	25.7386	14.6671	12.6438	13.983	18.446	12.9145	18.0608	28.0483	13.8284	17.4259	36.5353	20.4925	24.7029	17.4427	20.5409	9.985	6.04918	17.6854	14.6881	43.6463	34.0121	29.1931	27.949	4.06728	9.40486	22.4972	28.5116
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005897 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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