TCONS_00005887 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00005887
Unique Name	TCONS_00005887
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2097

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000061:168246..173092-

transcript sequence

>TCONS_00005887 ID=TCONS_00005887|Name=TCONS_00005887|organism=Clytia hemisphaerica|type=transcript|length=2097bp
CAAACTCTTCAGAATCGACTAAATTCAAAATGGTTGTTGTGGGTGGCTGG
TGGTGTTGGTAAAAGTGCACTCACTATACAACTTATCCAAAACCAttttg
tgGAAGACTATGATCCAACAATTGAGGATTCCTATATCAAACAGGTTGTC
GTAGATGGCTCAATATGTATATTAGATATTCTTGACACGGCTGGACAAGA
AGAATATAGTGCGATGAGGGAACATTATATGCGAACTGGAGAAGGATTCT
TGTGCGTTTTTGCTGTCACTAGTTTAAAGTCTTTCCAAGAAATCGATAAC
TTCAGGACGCAGGCCCTTCGAGTCAAAGATGCTGATTCAGTACCTATGGT
TTTGGTTGGTAACAAAGTTGATCTTCCCAAACGAGACGTCTCAACGAAAG
ATGGAAATGAAAAAGCACAAATGTTCAACATCCCATACGTAGAAGCATCT
GCAAAAACTAAACAAGGAGTCGAGGAAGCCTTTTTTACTTTAGTTCGAGA
AATCATAGCTGATAGGCGTACAAGGGAAAACCAAAAGAAGAAcgattcaa
aaaataaatcaaaatttaaatgtaccattctttaaaaaagttctaTTCAA
CTTCAATGAGAAGTGCAACTATGTAATTTAAAGGATTAAGCAACCACCAC
CTCGCTTACTTAAAGACAATATCCTTTTGAAGGCCCCACAAAACAACTCG
TATTACTACAAAAGACATTGATGTTTGGTGGCACATTAAAATAATGTAGA
TTTATTAATAATATACAgcttttttgatggtttttatACGATGGCATTAC
TATTATAAAAATTGGATTAACTATTGGAAACATTTTATTGACAATCTTAT
TGTGAAGATGTCAAATGGCtcccatttttgattttttgatttttttgcta
tttatattttcattgaaaCTTCTTTGGAATGAATTAACTGATGAATGGAG
TGAGACAAATGAATGGATGAATGAATGGATGAATTATTATCGATTCTGGt
gttatgtatttgtttttctcTATTTGAGTCGTATGTTTGACAAAGGCTGG
TCTAATTTCTTGACTATGCAATTGATTTAATCCTTAACCTGTTTAAAATT
ATCATTTATATGTTCACCCTTTCCTTAAAGATATGTACCTTTGCAATGTC
TTTTGGCATTACAACGGCCaattggttgtaagtgatgtACTGGGTAGAAA
TAATCCAAAAATTACAGTACATAGTTTCCTGAAgtcattgcaatggtgca
tatcataaaagAAGTGGGTAGCAAGAGTAGAGAAGAGTGATAAACAGTTA
TTATTTTTCGTGTATATCTTTATATCTTTATATCAGGACTTTTGTTTCCT
TGTCTTGTCTTTTCTTACGAATTCATTTTATAATTGTTAAcaatttattt
tgtttagttttctTCCCAATGgtgtatataatataatatttgaCTAGATA
CGTCTTTTAGTATTTACTTTTTTGATGTCTTTTGaacctttgatttttca
aaatgagcatgtctaaaattcaaaaatggaattttatttataaaattata
cagaGTCCTCatgaattaaaagtttataagatGCAAAAGTACATTCTTTT
TGGTAGAAGACAAATCAAACAGTGTATATATTTCCTTCTTCCTTCGACGC
GACTTTATCACTATACCTTCAGTTTTtatatgatttatttttcacatttg
acTTTATACCtatatttgttttatttgatgGTAGATATTTACTTGTGGGC
TTTTTTTCCCAATTGCCCTTTTAATTGATAGAAAAACCAATTTGACGGAA
AAAATTCTCCAACAACAAGATCGCTTCAtcttaaattgagttttgatctT
CTCTATTGTTTCTTTTTACGGGTATTCTAGTCTATTAAGCCTTTATTATG
GTACTATAGAataatgatatttttattttgaatattttttcctgTTTGTA
TTTTTTGACCTTCACTTCAATCTGGCActctattttttcatttctatttT
TAACAATGTAAAACCCAAACCCTCTGAGAGGTAATAATCTCACCTAAATA
ACTTAATGATTTcgttataaaaaagttttttgaatctTCAATTATGC

Run BLAST on NCBI

transcript from alignment at sc0000061:168246..173092-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00005887 ID=TCONS_00005887|Name=TCONS_00005887|organism=Clytia hemisphaerica|type=transcript|length=4847bp|location=Sequence derived from alignment at sc0000061:168246..173092- (Clytia hemisphaerica)
CAAACTCTTCAGAATCGACTAAATTCAAAATGGTTGTTGTGGGTGGTAAG
TTTAAATCACAATAGAACAAATCACTAGTTATCACATAATTACATGTTTT
AATTCTTTTCAGGTATATTCAATGTCACCCTGCTCATTCCCTACTTTGTT
GTCTTATTTTCATATAAACATATTCTCCAGTCTCAAATAATGCAAAAATT
AAGAGCTGATAAAAAATTCCAATCAACCACTTATGATACTCTCCAACAAA
AAGGGGTTCTTAAAAATCCTCACAAGCCTTCAAATATCTCCTCTCATTTT
ATTTTTCAATCTATACTTTTCAGCTGGTGGTGTTGGTAAAAGTGCACTCA
CTATACAACTTATCCAAAACCAGTAGGACAAATTATCTTTTATACTAATT
GTCTGAGTATAATAAGGAGTAATTGTATTGTATTTTTAAATTTTTGAATT
CCCTTTTGTAACAGATTTGTTTGATTTTATAACAGATTTGTTTTTGCATC
ATCATTTAAAGTTGAAAATAAATGAAATTAAAAGATAACTGAATTGACCA
AATCTTACTAGTATAATTTCCTTATTTTCCTCAAAACTTTCTTTTCTTTT
CTTTCTTTATAGTTTTGTGGAAGACTATGATCCAACAATTGGTATGAATG
ATTTTTTAGTCTTTTGAAATTCTGATTTAATCTCCACAGGCATGTTCACA
AAGTCAAACAGCAAAAGTTATTCTTTTGCCTAGACAATATAAGCTATTCA
GAATGAAACTTAAAAAAAGGAGAACAATCAAATGATCATCTATTAAAAGG
TGAACTGCAGAAAATTCTCCTTGGTGAGTGTGAATGAAATTAAGGGTTAA
AAATCGAGGAACCTATTAATTCCAGTTAGCACCACTGGTTAACCAGCCTT
TGTGGATGGCTTGAGAGTTTTTGGTATTTATTTATTAAACCTAGATAATA
CTAGTTACTGTATAAACTTTGCAGCATAAATAACTAACACAAAGATTGTT
TTTTTCAGAGGATTCCTATATCAAACAGGTTGTCGTAGATGGCTCAATAT
GTATATTAGTAAGTTTATTATTAGTGAAAAATATGAACCTCTTATATTTT
ACCTTTCCTTTTTATTGTAAACAACCCACAAACTTTGAATAGAAAACTTT
TTAAGGCACATTTCTGTTATTTTAATAAAAAGGTTTTGTTCTTTCTTTTG
ATTGATAGGATATTCTTGACACGGCTGGACAAGAAGAATATAGGTGAGTC
ATGCTTGCGAATATATACTCTTCTTGAATTGAAATGCATGAAATCATTGT
GTGCTTCTTCAAATTACCAAGATACTGCAACATCCATAGACATATTAGTG
TGTTTAGAGCTTTTCTGCTTTTGTATTGAAATCGATAACGGTTTTTTGGA
AATGAAAATACGCATAAACTATGCTATTTTACAACGAGGCAAACAATAAT
TTTGATTTTTTCTTTATTCCTTCAATGCCTTGAGTCTCCTCAAAGACCCT
TTACCTTCATCAAGTTTGTAAAAAAAAGTCAACGGTGAATAATAGGGTAA
TTTGTAGGAGCTCCATTGACCAAACACTTGTGATTTTGATTAAAGTTTAC
AGGTTAACTTAATTTGTTGACCAGTGTACTCTAAACTCACAATTTCGTCC
TCAGTGTGGTTTGGCAAGAGGAAATAACTTTATAGAAAATTTTGTTTTTG
GATTTTAGTGCGATGAGGGAACATTATATGCGAACTGGAGAAGGATTCTT
GTGCGTTTTTGCTGTCACTAGTTTAAAGTCTTTCCAAGAAATCGATAACT
TCAGGACGCAGGTAAAGTTTATTCTGCTAAATATAATCTTCAGCAACGAC
TATACCATTTAAACGAGTTTGAATAAAAAAGTGGTTTTTGCTTGTTGGAA
AGATATTCAAGAGTGNTCTTCAGCTATACCTTTTAAAGGAGTTTGAATAA
AAAAGTGGTTTTTGCTTGTTGGAAAGATATTCAAGAGTGGCATATTACAA
ACTAGAATAAATGGATTTTAAACATTTTTCATAGTAATAACACTCGAAGA
TTGAAGTATAGGGATTTCTATAGTATGAAAATAATGATCGAAATTTTCTT
CTTCATTTTTTTTGGAATTTTTTTCTTTTTGACAAAAGGTTCCACTCCTG
ATTGATTATCTTATAAACAAGCTAAAACTGCTTTTTGATTTAAATGCCCT
ATCAAATTCTTTCCACCGGTTTTATAATATTCAGCTTTTAAATCAAGGCA
CACTAATTTGAATCTGTTTCTTTTTGTTCAACGCAATTCATTATTTTACC
AATATAATATTACATCATTGCCTGATTTCCCTGCTTGTCTTTATATCCAG
GCCCTTCGAGTCAAAGATGCTGATTCAGTACCTATGGTTTGTAAGTAGAC
CTTACCTTTAGCACTTAGTTTTTCCTTAAAAATTTTTGAATAGAGTTTTA
CCTAAAAATTTTGAAAAAGCAAAGTGGCATGGGTTTGTGGTACTTTTACA
TCCTGGACCCAAACCGATCTCAATATGTTGTTCTTAATGGGAGAATAATA
AGTATCGATTCATAAAATAAAAGTCAATTTACCATTATGAACTAATTTTT
CTTTGCAGTGGTTGGTAACAAAGTTGATCTTCCCAAACGAGACGTCTCAA
CGAAAGATGGAAATGAAAAAGCACAAATGTTCAACATCCCATACGTAGAA
GCATCTGCAAAAACTAAACAAGGAGTCGTAAGTTAGCTTAATATTGTTAC
CAACTCTTACAAATCAAAATTTTCCTCTTTGGAATAAAACCTCTTTGTCA
TGCAAACACTTATCAAATATTTAAGCAACTTCACTACACCAAAGCTAAGA
TTTGACTTAATTCCTCGATTTATTTTTTCATTATAGGAGGAAGCCTTTTT
TACTTTAGTTCGAGAAATCATAGCTGATGTAAGTTAATATTTTATTTAGT
CTTGAATTATTCCTAACCCTTTCTTATGACTGCGATTTTCGAATTCGTTG
AGGAAATCTAGCGAGAACTCTTTTATGGTTTGAAATAGCATAACATAATT
ATTATAAGAAACCAAGTTGCAGGGTCTTAAACCCTGAACATGTCAAATTT
AACTTAGGTACCCTGAGAAAGCAACCAGAAATTCCTTAAAATGTGGTATT
TTCAGCTTTGTTTCGCATTGAAAGCCTGTATGAACATTGATAAGCAACCT
TTACTGGGATTATGAACATTCCATTTAAAGTTATGTTGCTTTTTTCATTT
TCTTAATTTACAGAGGCGTACAAGGGAAAACCAAAAGAAGAACGATTCAA
AAAATAAATCAAAATTTAAATGTACCATTCTTTAAAAAAGTTCTATTCAA
CTTCAATGAGAAGTGCAACTATGTAATTTAAAGGATTAAGCAACCACCAC
CTCGCTTACTTAAAGACAATATCCTTTTGAAGGCCCCACAAAACAACTCG
TATTACTACAAAAGACATTGATGTTTGGTGGCACATTAAAATAATGTAGA
TTTATTAATAATATACAGCTTTTTTGATGGTTTTTATACGATGGCATTAC
TATTATAAAAATTGGATTAACTATTGGAAACATTTTATTGACAATCTTAT
TGTGAAGATGTCAAATGGCTCCCATTTTTGATTTTTTGATTTTTTTGCTA
TTTATATTTTCATTGAAACTTCTTTGGAATGAATTAACTGATGAATGGAG
TGAGACAAATGAATGGATGAATGAATGGATGAATTATTATCGATTCTGGT
GTTATGTATTTGTTTTTCTCTATTTGAGTCGTATGTTTGACAAAGGCTGG
TCTAATTTCTTGACTATGCAATTGATTTAATCCTTAACCTGTTTAAAATT
ATCATTTATATGTTCACCCTTTCCTTAAAGATATGTACCTTTGCAATGTC
TTTTGGCATTACAACGGCCAATTGGTTGTAAGTGATGTACTGGGTAGAAA
TAATCCAAAAATTACAGTACATAGTTTCCTGAAGTCATTGCAATGGTGCA
TATCATAAAAGAAGTGGGTAGCAAGAGTAGAGAAGAGTGATAAACAGTTA
TTATTTTTCGTGTATATCTTTATATCTTTATATCAGGACTTTTGTTTCCT
TGTCTTGTCTTTTCTTACGAATTCATTTTATAATTGTTAACAATTTATTT
TGTTTAGTTTTCTTCCCAATGGTGTATATAATATAATATTTGACTAGATA
CGTCTTTTAGTATTTACTTTTTTGATGTCTTTTGAACCTTTGATTTTTCA
AAATGAGCATGTCTAAAATTCAAAAATGGAATTTTATTTATAAAATTATA
CAGAGTCCTCATGAATTAAAAGTTTATAAGATGCAAAAGTACATTCTTTT
TGGTAGAAGACAAATCAAACAGTGTATATATTTCCTTCTTCCTTCGACGC
GACTTTATCACTATACCTTCAGTTTTTATATGATTTATTTTTCACATTTG
ACTTTATACCTATATTTGTTTTATTTGATGGTAGATATTTACTTGTGGGC
TTTTTTTCCCAATTGCCCTTTTAATTGATAGAAAAACCAATTTGACGGAA
AAAATTCTCCAACAACAAGATCGCTTCATCTTAAATTGAGTTTTGATCTT
CTCTATTGTTTCTTTTTACGGGTATTCTAGTCTATTAAGCCTTTATTATG
GTACTATAGAATAATGATATTTTTATTTTGAATATTTTTTCCTGTTTGTA
TTTTTTGACCTTCACTTCAATCTGGCACTCTATTTTTTCATTTCTATTTT
TAACAATGTAAAACCCAAACCCTCTGAGAGGTAATAATCTCACCTAAATA
ACTTAATGATTTCGTTATAAAAAAGTTTTTTGAATCTTCAATTATGC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003360	XLOC_003360	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000061	supercontig	sc0000061:168246..173092 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.3981	19.7535	23.6629	12.8468	34.0573	15.5349	38.325	27.6287	12.8522	13.4622	16.5657	7.99758	8.80075	4.8513	11.374	6.87485	8.62271	11.2009	12.2881	10.5738	25.0585	26.0932	15.9356	19.6496	8.46522	11.5817	23.1149	20.9364	19.6245	20.9319

Blast

[Close]

BLAST of TCONS_00005887 vs. Swiss-Prot (Human)
Match: RASN (GTPase NRas OS=Homo sapiens GN=NRAS PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 4.280e-70
Identity = 109/157 (69.43%), Postives = 129/157 (82.17%), Query Frame = 1

Query:   61 KSALTIQLIQNHFVEDYDPTIEDSYIKQVVVDGSICILDILDTAGQEEYSAMREHYMRTGEGFLCVFAVTSLKSFQEIDNFRTQALRVKDADSVPMVLVGNKVDLPKRDVSTKDGNEKAQMFNIPYVEASAKTKQGVEEAFFTLVREIIADRRTREN 531
            KSALTIQLIQNHFV++YDPTIEDSY KQVV+DG  C+LDILDTAGQEEYSAMR+ YMRTGEGFLCVFA+ + KSF +I+ +R Q  RVKD+D VPMVLVGNK DLP R V TK  +E A+ + IP++E SAKT+QGVE+AF+TLVREI   R  + N
Sbjct:   16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLN 172

The following BLAST results are available for this feature:

BLAST of TCONS_00005887 vs. Swiss-Prot (Human)

BLAST of TCONS_00005887 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RASN	4.280e-70	69.43	GTPase NRas OS=Homo sapiens GN=NRAS PE=1 SV=1	[more]

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TCONS_00005887 (transcript) - C. hemisphaerica