TCONS_00005884 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005884
Unique NameTCONS_00005884
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1218

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005884 ID=TCONS_00005884|Name=TCONS_00005884|organism=Clytia hemisphaerica|type=transcript|length=1218bp
gattaataaaaaaatattggatCAAAAATCCATCAGTAAGACGTTTTATG
TTTTCATTCATTGTATCATAAAGATGGGTAGCGATTTTTCCAAAACAATA
ACCAACAACAAAGAATGGGCAAAGTGCATTTTGGCTCTCAACATTCACGG
CAAGAATGGACTTCTCCGTGTCATGCACAACGACACGAACGACCCTTTAT
ATCAGGGTCTTCCCCGCAACGAGCAGCAGTTATATCAATTCTTCGATAAA
TATAGAAAGAAATTGAACGGACTGAAAAAAAGTGGAGCTTTGAAGAAAGA
TCAATTTGACCTTTTGCTTCCAGCCAACGGAAAAACCTCTTCACTNCCAA
TTCTTCGataaatatagaaaaaaattgaacgGACTGAAAAAAAGTGGAGC
TTTGAAGAAAGATCAATTTGACCTTTTGCTTCCAGCCAATGGAAAAACCT
CTTCGCTCTCATTTGACATTACCTTGATCGTCTTtgtcatcatcaatttt
gtgaatattacACCGCCCAAAGGTGGTTGGAGAATCAAAGAACCGAAACA
AGGCGATTTTTCCGTTGCAGCATTTATCATTGCTTTACGACAACTTCGAA
ATAAAATTCTTCATGGTGCTTtaaaagaatttaaagatcAGAACTTCTTT
AAAGGAATTTGGGCAGAAATAAGAGCAGCTTTGGTTGGAATCAATTACAA
CTGTTTGCCAGATTTTGATAGTTTGCTGCATGACAAAGTCGTTGTTGATA
TTAAGGATGGAAAAGATCATATGACAGACTTGGTTGAAGACTTAAAGAAA
ACTGTACAAGATGAAATGagcaagcaaaacaaagataTGTTATTAACAGT
GATGAAAGAAGttgataaaaaagttaaagaacTCCAAAATCAAAGAGCAG
AAGAGGAAGATTATcgcgaagaagaaaaaataatttcGGTGCAGAAGATG
ACACACAGCGATGTTCTCTTCAAAATAAACGCTGATAACATTCATACTAT
ATTCACTATCCAATGTTGGAGGAAAGGGAAGAAAAGGACTTTTCAAGAAA
TCTTCAGACATGTCACAGAACAAGCCAAAAGATATATTTGGTTGCATGTT
CACTTGGAGTTGGAGTCTCCTTACGAATATGAATTTTTCATTCAATACAT
GGATAATGAAAAGTGCATGCAGGAAATCAAAGAGATAATACATCTCAAAG
GTACGTCAATGTTTTTTA
Run BLAST on NCBI

protein sequence of TCONS_00005884-protein

>TCONS_00005884-protein ID=TCONS_00005884-protein|Name=TCONS_00005884-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MTDLVEDLKKTVQDEMSKQNKDMLLTVMKEVDKKVKELQNQRAEEEDYRE
EEKIISVQKMTHSDVLFKINADNIHTIFTIQCWRKGKKRTFQEIFRHVTE
QAKRYIWLHVHLELESPYEYEFFIQYMDNEKCMQEIKEIIHLKGTSMFF
Run BLAST on NCBI

transcript from alignment at sc0000061:16054..20169-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005884 ID=TCONS_00005884|Name=TCONS_00005884|organism=Clytia hemisphaerica|type=transcript|length=4116bp|location=Sequence derived from alignment at sc0000061:16054..20169- (Clytia hemisphaerica)
GATTAATAAAAAAATATTGGATCAAAAATCCATCAGTAAGACGTTTTATG
TTTTCATTCATTGTATCATAAAGATGGGTAGCGATTTTTCCAAAACAATA
ACCAACAACAAAGAATGGGCAAAGTGCATTTTGGCTCTCAACATTCACGG
CAAGAATGGACTTCTCCGTGTCATGCACAACGACACGAACGACCCTTTAT
ATCAGGGTCTTCCCCGCAACGAGCAGCAGTTATATCAATTCTTCGATAAA
TATAGAAAGAAATTGAACGGACTGAAAAAAAGTGGAGCTTTGAAGAAAGA
TCAATTTGACCTTTTGCTTCCAGCCAACGGAAAAACCTCTTCACTNCCAA
TTCTTCGATAAATATAGAAAAAAATTGAACGGACTGAAAAAAAGTGGAGC
TTTGAAGAAAGATCAATTTGACCTTTTGCTTCCAGCCAATGGAAAAACCT
CTTCGCTCTCATTTGACATTACCTTGATCGTCTTTGTCATCATCAATTTT
GTGAATATTACACCGCCCAAAGGTGGTTGGAGAATCAAAGAACCGAAACA
AGGCGATTTTTCCGTTGCAGCATTTATCATTGCTTTACGACAACTTCGAA
ATAAAATTCTTCATGGTGCTTTAAAAGAATTTAAAGATCAGAACTTCTTT
AAAGGAATTTGGGCAGAAATAAGAGCAGCTTTGGTTGGAATCAATTACAA
CTGTTTGCCAGATTTTGATAGTTTGCTGCATGACAAAGTCGTTGTTGATA
TTAAGGATGGAAAAGATCATATGACAGACTTGGTTGAAGACTTAAAGAAA
ACTGTACAAGATGAAATGAGCAAGCAAAACAAAGATATGTTATTAACAGT
GATGAAAGAAGTTGATAAAAAAGTTAAAGAACTCCAAAATCAAAGAGCAG
AAGAGGAAGATTATCGCGAAGAAGAAAAAATAATTTCGTAAGTAATTTCG
TTCTTCTTTCGGCTGACTAAGTAATTTAGGGAGGATTTGTACTTTTACGG
TGTGACGGGATTGACCCTATTTGCCATCGAATGGAGCCTAAAGCGACCAA
GGATATCATTCAAAGTTTCACGCCTAAGGATAATTTTGCGAAATTGTTTG
TCACTATTGTTATACCGGTTAAATGGTTAACCGGTTAAATGGTAGCCCGG
TATCAAGTTTGTCCTTTTCTTAACCCTATCGAATTAATGAATCTAGGAAA
TTCCCTATTTTGGGAAATTCCCTTTTTTATACAACCAATAGTAGGTTAAG
AAAACCAATAAGTTATGGCTCTGGCTGGACTGCTCTGAATTTTTCGAGTT
TTTCACACTTAAATGTTCTTGTCATATTTATTAAAATGGAAATATGTACC
TCTCAGTAAAGACTGTTATTAATTCTTAGGCTTTGGCTAAATTTCAGCAT
TATATGTATTTTTTAATTGTTCTTGTAAAAAACTCAGGCAAATTAAGGCA
CGTCCAAATTTATCTTAATTTTTTATCACCGATTCCACTTGTCATAGCAT
ATCACTGCATACATCGAAAGAAGCCTATTGGAGTTTAGATTACTGGAATA
GCTGTGCCATAATTAATTTTTTCACCCAAAAAAAGATAATAGACAAAAAC
CAAAAAATGCTGACGTCAACAAAACTTGTTTTTTGAATAACTCCAGTTTG
GCTTATGGTATAAACATGAAATTTGGACAAAGGTTGCATATCAATAATAG
GAACATTTTTGCATAATTTATTTTCGCAAATTTTGCTGACGTCAGCAGAA
ATCAGCAAAATACGAAATTTTGCAATAAAGTGCTGACGTCAGCAAAATTT
CAAAAAGAAAAAAATTCAAAATGATCCTTTTAATGGTGTGCAACTTTAAA
TTTCATGTTTTTTTCATAAGCCAAACTGGAGTTATTCAAAAAACAAGTTT
TGCTGACGTCAGCATTTTTTGGTTTTTGCCTTATATCTTTTTTTGGGTGA
AAAAACGGTGATAAAAAATTAACGTAAGTTTGAAAAATCTGGACAGGCCT
TAATTTGCCTGAGAGGCGTGTAAGGCCAGGCACGGATGTCACTCTAAGTA
GACGCCAAAACAAAATGGGCTTTACTTTTGAAACTATAGCTGTAAATCAC
TCCCTTGACACATTTGTTAGCATTCGAAGACTGACTTTTGTCTTAGATCA
GATGAAAAGTCAAAAATTGCATTCTATAGAGCATTCTTTTTGAAAGCGAA
TATGTGTTTGTTTTGCTGCGGTGGCACTTTAATGACCGCTAGCCATAGCT
ATTAGTACGGTATAACGACGAATAAGAGAGGGGAAAACGGTATTTTAAAA
TCAGATGGTGATGTTATATAGCATTATTCTTTGATAGATTGTATTATTAT
TTTTTCTCGATTTTCGATATTCCGGGATTCAGCAAAAATTTTGACGGGAA
ACAGTATTTCGAACCCTTACAAATCCCCCTCAATTTAGAATCCTCAGAGG
ACTTGAGTATAAATTTGGCTTCGTCAATAATTACTTTTTATATTCTTTGA
ATCTAGAAATATCGATTTTCATTCCCTTTGGCACTAGTCATCTAAACGTA
AAAAAATATTGAGAAAATAAATCACCGATCTGGATATGGATTAACGGCTA
CCAATAAAATCTCGCTTTCTGATACCTTGGGGTACTTGGGCAAAATTGGG
TACGGGGATGTGCCACTGGTCAGGGTACTTTTTTTCAACTCCATGAGTCC
CTGATAGGGTCACAAAAACACCAAAATAGAAAAATAAATCATCACATGGT
ATCTTTTTGGGGGAGATTTGGAAAATTTCTTTTTTTTAACGTTGGTGTAA
AAAAATATAGTACAAAACTAATTAAAACCAACTTGACAATCGAATATTCC
CTAGCCAGAGAATAATATTAAAATTGATAAAATCATTAAAATATTGAACA
AAGTTTGCAAGAACAATAGATTTTTGTTTTGCATATTTTATTTTTGAAAC
TCTCCACTGAGTCCAAATTTTTAAGTTCTGCGGGCAATCTATTCCATGCT
TGCCCTGCTCGAAAATTAAAAGAGTTCAAGCAAACTGAGTTCTTTGGTTG
TGAAAGTTTAATTTGAGCGCCTCTCCTAAGTTTAGGACCTTTCCGAAAAT
TTTCGTTCTGGTCCTCAACCTCATTATCAGTGTTTTTGACTTCGATGATT
TCAAATTGATTCTGGCCTAGTTTATTGCCGATGTTATTGCTTTTGTAAAC
TTCCACTAGCATTATTTGAAGGGTTTGAGTATGTATTGACTCACTGTTGT
CCTTTTTTAAAAGTGCATCATAATTCAGGTTTAAAAGATTTAGTTTAACT
TTCAGGGCCCTAAAATGAGTATCGCACAAAAGATTGTGAGCCAATTTACT
GCAAAACATCCAAACAAATGGGCAATATTTGAAAGCAGATAATATAAAAC
TATTGAAAAGAAAATCTGCTTGATCTTGATTTAAAAAAGATCTAAATCTA
AACATTGTTTTAGTTTTCTGTGAGGCCTTACTACATATATCCTGTACATG
AGAATAAAAAGTAAGACCAGTATCAATAGTTATACCAAGTAATTTCACAC
ACTCAGAAGATTCTAGTGAAAAAAGCCCTATTTCTAGTACAATATTCGAA
TTTTTTGTACCTGGCAATAAAACATGGAAAGTTTTGAGAAAATTCTTGGG
ATTTCAGTCCCATTCCGGGTCATTTTTTTCAAAAAAACTAGTCCCACGTA
GGGTCCATTTTTCGAACTACAGTGGCACACCTCCGTCCGTCGGCAAGGCT
AGAACCGATACCCCGGAATCTGATGACTGAGACTTTTTTTGAAGGATTGA
AACAAATAGATATATATTTTTGTCATTTTAAACAGGGTGCAGAAGATGAC
ACACAGCGATGTTCTCTTCAAAATAAACGCTGATAACATTCATACTATAT
TCACTATCCAATGTTGGAGGAAAGGGAAGAAAAGGACTTTTCAAGAAATC
TTCAGACATGTCACAGAACAAGCCAAAAGATATATTTGGTTGCATGTTCA
CTTGGAGTTGGAGTCTCCTTACGAATATGAATTTTTCATTCAATACATGG
ATAATGAAAAGTGCATGCAGGAAATCAAAGAGATAATACATCTCAAAGGT
ACGTCAATGTTTTTTA

Coding sequence (CDS) from alignment at sc0000061:16054..20169-

>TCONS_00005884 ID=TCONS_00005884|Name=TCONS_00005884|organism=Clytia hemisphaerica|type=CDS|length=894bp|location=Sequence derived from alignment at sc0000061:16054..20169- (Clytia hemisphaerica)
GGTGCAGAAGATGACACACAGCGATGTTCTCTTCAAAATAAACGCTGATA
ACATTCATACTATATTCACTATCCAATGTTGGAGGAAAGGGAAGAAAAGG
ACTTTTCAAGAAATCTTCAGACATGTCACAGAACAAGCCAAAAGATATAT
TTGGTTGCATGTTCACTTGGAGTTGGAGTCTCCTTACGAATATGAATTTT
TCATTCAATACATGGATAATGAAAAGTGCATGCAGGAAATCAAAGAGATA
ATACATCTCAAAGGTACGTCAATGTTTTTTATGACAGACTTGGTTGAAGA
CTTAAAGAAAACTGTACAAGATGAAATGAGCAAGCAAAACAAAGATATGT
TATTAACAGTGATGAAAGAAGTTGATAAAAAAGTTAAAGAACTCCAAAAT
CAAAGAGCAGAAGAGGAAGATTATCGCGAAGAAGAAAAAATAATTTCGGT
GCAGAAGATGACACACAGCGATGTTCTCTTCAAAATAAACGCTGATAACA
TTCATACTATATTCACTATCCAATGTTGGAGGAAAGGGAAGAAAAGGACT
TTTCAAGAAATCTTCAGACATGTCACAGAACAAGCCAAAAGATATATTTG
GTTGCATGTTCACTTGGAGTTGGAGTCTCCTTACGAATATGAATTTTTCA
TTCAATACATGGATAATGAAAAGTGCATGCAGGAAATCAAAGAGATAATA
CATCTCAAAGGTACGTCAATGTTTTTTATGACAGACTTGGTTGAAGACTT
AAAGAAAACTGTACAAGATGAAATGAGCAAGCAAAACAAAGATATGTTAT
TAACAGTGATGAAAGAAGTTGATAAAAAAGTTAAAGAACTCCAAAATCAA
AGAGCAGAAGAGGAAGATTATCGCGAAGAAGAAAAAATAATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003358XLOC_003358Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005884-proteinTCONS_00005884-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005884-exon-sc0000061-1575043694:19233..20169TCONS_00005884-exon-sc0000061-1575043694:19233..20169Clytia hemisphaericaexon
TCONS_00005884-exon-sc0000061-1575043694:16054..16334TCONS_00005884-exon-sc0000061-1575043694:16054..16334Clytia hemisphaericaexon
TCONS_00005884-exon-sc0000061-1510915933:19233..20169TCONS_00005884-exon-sc0000061-1510915933:19233..20169Clytia hemisphaericaexon
TCONS_00005884-exon-sc0000061-1510915933:16054..16334TCONS_00005884-exon-sc0000061-1510915933:16054..16334Clytia hemisphaericaexon
TCONS_00005884-exon-sc0000061-1491911889:19233..20169TCONS_00005884-exon-sc0000061-1491911889:19233..20169Clytia hemisphaericaexon
TCONS_00005884-exon-sc0000061-1491911889:16054..16334TCONS_00005884-exon-sc0000061-1491911889:16054..16334Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:16054..20169 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.126939	0	0.150365	0.164779	0.724112	1.16932	1.30536	1.65257	0.526805	0.607422	0.943756	0.700728	6.30113	6.33121	1.22996	3.19375	3.71852	3.75968	1.86682	3.08699	4.6882	4.72467	1.52946	1.83888	9.7651	9.17743	5.60428	7.59698	3.97443	3.13612
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005884 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top