TCONS_00005879 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005879
Unique NameTCONS_00005879
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1805

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005879 ID=TCONS_00005879|Name=TCONS_00005879|organism=Clytia hemisphaerica|type=transcript|length=1805bp
tatttttgttattgCGGTGGGTGATGAAGCGACACAAGTTGAAATGAACA
AAATCACACGTTCTAATGATCGTTATCTCAAAGTCAAATCAGCTACTGAC
TTACTGAATAAAGATTTCATTCAACAAATCACTGGCGATACGTGCGCTAA
AGTTATTGCAGCAGAGAATCGTGCCAAGACAACCACAACAACCACAACCA
CCACAAGcacaacaacaaccactacaACTACTACTACGACCCCTCCAACT
ACTACTACCACCACCACTACACCAGCTCCAACAACCATTTGCCCAACTCC
ACAACCAAGATGTTCAGGTGTAAAGAATTGCACGCAGTGCTGCCAACCTC
ACGAAACATACATCAATATTTTCCAAAGTGGATCtGGACCAAATTACATA
ATGCAAGGAGCTCGCATGTCATCAACACATGATAAGAACTTTTGTTGTGG
AGTTGAAGTGACCAGCAAGAAAATCCAACCAAGTTTTGATGTCAACTCCT
TATCTGACATGAACAATATGATAAAAATGCTGGAGCAAAGGATGGGAGAt
caacaaaatcttttcaatACATTGAAATCGGCACTTGCATCTAACAACAA
TAACAATGCTAAAAGTCGAAAGAAGAGATCTCTACAAGATGATGCTTTTG
GAAGACTCATTAAATCAGTGGAAGTTTCTGGATGCAAACACTTTTTCCGA
GATGCTTTGGAGATCAAGCACATTcgaaaaagtcttgaaaaacagaaaaa
gatcACATTATTTTGTCCACTTGATGGTGCATATAATGATTACCTCAAAA
CATGGGAACCCGAAACTTCAGATAAGAAGGAACAAATTTATCACCATTTC
ACAAGACAAGCCAAGCAACGTGGACTGATCTTTGAATCTTTCTTGAAAAA
TGATAAGTTGATCTTAAAATCAACCATTGAAAATGGACAGATTGTCTTCA
AAATTGAGGATGCTAACATTAAAGTTTGTTTGGCGTATGGTTCAGTCAAT
ATTTGTGTGATCGACAAAGTACTTCAACCAACTACATACACTGTAATGCA
GATCTTAACAGATGGCAAACATCTTTCAATCATGAATGAATTATTTCATA
AAAGCCCTCTCCAGAAGCTGCTACATCGCAATCGATTTGTAAATCGTGTG
TGTTTCACTGACAAAATCTGTTTACCAATTGTCGGCAAATTAAGAAAGCA
TTTCAATGATTTGTTGAAAGCTAAGCAATACACCATTCAACTTATTGAGG
ACGATTTCTTCAATAAGATGAACCCAATGCTTATGTTATCATTGAggcaa
aacaaagaaatcagGGAAGAATTTTTGTTACAACATATTTTCCTTGGTAT
TTTACAACACAACGATCAAGACAACAACTCACGATTGATCGCTGCTTCGG
CACAACAACGACAACCCGTTTCGGAATGGTTATGGAGTGATGGTAAACCG
ATTGTATCAAAGTGGGGTGGATCAATTTTTGTTGTTGCTAGACAAACAAG
GGTCAAGGAAGGATTGATTCAAGTGTTAAGAACAttagaatgaacaaaaa
agcAGATGAGACTATAACATTATAATGATGATCTTAAGAAGAAGATCATT
TATCTTCGTCTGGAAAATAATCGACAAGATAATGCTGCAATAATTGGATG
TGATGATTATGTCAATTAACACATCTAATTTCTGAATAAGACTCTTCATT
TGAAcaagcatgaacatataaacgactggacatctatcttttattgtctc
tttgaagcgagcttcgttgccgcctgtatttcaaaattggtatgaaaaat
ccgac
Run BLAST on NCBI

transcript from alignment at sc0000061:1060511..1078108+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005879 ID=TCONS_00005879|Name=TCONS_00005879|organism=Clytia hemisphaerica|type=transcript|length=17598bp|location=Sequence derived from alignment at sc0000061:1060511..1078108+ (Clytia hemisphaerica)
tatttttgttattgCGGTGGGTGATGAAGCGACACAAGTTGAAATGAACA
AAATCACACGTTCTAATGATCGTTATCTCAAAGTCAAATCAGCTACTGAC
TTACTGAATAAAGATTTCATTCAACAAATCACTGGCGATACGTGCGCTAA
AGGTaataaaaacacccccttctcacagacccggtgggaccctaCCCAca
ggaaaatttggccaaaatatcgtccctagtGGAATAtcatactccaattt
ttgtctccgctgaaaataatcaaatcaacaaaCATTGTATActattttaa
atcaagtttcaGGCCGTTACTTTTACCATCACTACGGGCTCAAAAAACTc
tatcgggtctgtgagaaggaaaTGTATAAAATGTTCTCTATGTAACTTAT
GGCATGTCCCAAAAGCCATAAGTTGGGCGCAGGAAATTGGGGGCCTTAGA
AATGTTCATTTATACATTTAAAGAGGCGTATCAGGATGTAGAATTCAGAT
ATCActgttaaaaattaattttaacaacaaaaaaaagttattaggctaaa
accaaaaaatgctgacgtcagcaaaacttgaaatttaaaaacatgaaatt
tggacatgcCATAAGTTACATGAGTTTCTTATCCTTTACTTCGGGGAAGC
CACGTGATACTTTTTCAACCAATAggattcaatcattttcaaaggaaaac
acACACCATTGTTTAACTCGTAATAAGGTTTTGGTTATtaaatgaacaaa
aattaatatttttaataaatCACTATTATCATAGTGCTCTATTTCCACCC
AAAACTTACGTCATACAgtgacaaaaaataattttcgatgAGACTAATCT
AACAGgacaaaagaattttaaaattttcataatatcttaacatattattt
aaaaaagttagttttcaAAGGTAAAGTCAGGTAAAAGACTGATTAGACTG
ATTTCCACCCTCACTATAAGGTGTGAAGAAGAATTTTAGCAAGGGTTTTG
TTGCAAATGTTGTCATTTTCCAAAGGGGTATCCCCACATTTTCTAGAGTt
atttttggcttgaaaaggtttgtCAACCCTCCTCCTGTATGGATTTGAAA
TGGAACAGTCCATTTTATTACAATAATTCACTTGTCTTTTTTCAGTTATT
GCAGCAGAGAATCGTGCCAAGACAACCAGTAAGTATTTATTCCAAATACA
CTAACCCGGGGGGGCACttgatttcgaaacgacggtatgtgccgcgcaaa
atttgcttttcaaaatcgtaccctttcagtgcattttctcttgatttacc
caatccttatagtgcactatatttctcagctgtaaaccTGCGTGtaagaa
gaagcttgggaaattttctgtttcaaagaaaaactgagaaaattattctt
gtcagagCTGGTCagagctgtaattatcagacaataaaaactttttcaaa
taaacgagaagtaaaaacctttcttcttAACACTtattttggatttgttt
taaaattcgacccttacagtgcaatctcacagaaacacacccttacagtg
cattttgggatgttgaaaaaccccacccttaagcgcggcacatgacgtag
gccagatcatatgagtggcCTCCCCGGGCTTTTGATACTTATGCCGATCA
TAGGTAAGTGAATTAAATATAACCCGGAAAATCaaataaactaaaattga
aAGGGTTATCTATAAAGTGTAGCTTacaaaaatatcatatttttaaaaag
gctTATAAAATGCATGAATTCAGGATGAagtaatttgaataaaattctaA
GGATTTGGCTTGTGAAACGAAAAAAGTTACCTAAAAATCAAGTTTCTCGT
AATAAAAAGTCCAGGTTCCAATTAttattttggaaagaaaattcaCTATT
CCGTGAAGCTTTTGATTTAAAACATTTGCTAAACTAGAAGTGAGAATTCA
GTATTATATAAGCTGTTCCACAACAAACATTCGTCTCTGATACCTACTAG
TACTTTAAAATAGggctattttctgaaaaaaatttgctCCTACTTTAACT
CAGGAGAAGAATACGAAAAGAGTGTGATTGCAAAGATTTTACGTGATGGA
GTTTCTTTCGATCCTTGGATAAACAAACCCACAACAGGTTTGAAAACTGT
AAAATAACTCTaaagaaataatcaaaaattcaatcaaGGCTCAAACCAGA
TTTTCTAAAACTAATCTTCACTTTATTTTTGAATTCATACAACCTGATTT
TTCATTTGATTGTGAAAACTCCAGAAAACTCATAACGATAAtcaatgaaa
gaaatttcaCCCGTCATTTCATCTAAAAACTCAGAAAATCCACAACTATC
ATACAAACTAATTACCACCTGAACTCATACAATAAATATTCATGCATTCA
TGCAATATATATACTTTCAAGATACAACTCAAACAAACCCTGACCCCCTA
CAAAAATATCACTCTTGACTTTACTACTTGTTAATGGCAGTTTGCCCTCT
ACAAGAAATTCACATAAAACCTTTGAGAGTTTGCTTAGCATGATGACATG
AATGAAATAAAGTAGTGGGTATTTGGGGGCAGTCAAACCAGCTAGCAAAC
TGAATTTAACATCTGACAATTTAACACTTTTCAGAGCCAAATGCTCCTAT
TGTCATTTTCAACTTTGTTTGGGAAgcaatcaagaaaaaatttagattAA
ACTTTTACGTATTAGTTCCTGTATTAATCACTAGTATTATGGCAGAGAGG
ACAGGTGTTCACCCCAAGCAGTCAATTTTTAAGGGGTGCAGAAAGATAAG
TGGCACAAAATTTTGTCCCTCTTGTTTTTAAGCACCCctcaaaattgatt
tgaaaaatcttgcaTAGGTgcctctgattactaattttgGCACCCCTTTT
TGACATCTAAAAGCTTGCTGTTTCCAcccaaaaagagaaaagaatgccga
aaacccttttttcttacttttttagcaAGTTACTTTGCTATTAAGCTATA
TTTCACTTTAAATAGTGGGCGCCAAAGTCTCAGCTTTTGAAACTTGCCTC
GTATCTTTTTAAGTCTgctttttttgtacaaaaagattgttttaaaaatc
aaagttttaattttggttATAAGTGGCTTAGAAAGTTTCTTTAATTTGCT
TTTAGAGAGTTATTGCAGAGGTGCATGTAAATCTGCCAGATTATTCTTCT
TACTAAAAAGGCTTGCAAGTAAGTGATTTGgatttggagttttttgaaag
aaaatctgAAATGTCATTTTGCATGTATGACATTAGTCAGATGGaattat
taaaatttaaattcatttaCTACAAAATCCTCTTTCTGAATTGGTTGAGC
TGAATTGTCATTATTCATAATTTCTAACAATTGGTAACCAGCAAAATCAT
TTCTACAATATTAGACCAGCGAtcgaggtagtgaattgtgacacttcgta
gggcaccccttaaaTCAGGGCAAATGATATTATGACCCTAATAGGGTGTA
TATAGAGCTGATAagaaaaatttgcccttcgaatctcctacagtttttga
ataaattgattttcagttaattgatggaacttatcaagggtcccctcTTT
ACTAACATTTTTCTAGAAACGATACTACCAAAAGATTCAgcatgaaaagt
agataaagaaaatcagTATCAATACCTTCCTAAAATTTACTGAAAACCCt
gccacctggtgccgagaaatggtaattttaaggcaaaaaatcaATGTTTT
GGGTGTTGTTTTCCTAGGATTATTTTCAGAAAGATCATTCCCGAGATAGC
TCTGACTTTGTAGTATCAAAAAATAGAATGGTTTGTTAAATTTCAGTGTC
TAAATCTTGCTTGGTTTAGTATTGACATCTCTCATCTAATTcagacaccc
ttctttagagataggaataatatgaaagtaggaatcactgattgaaaaag
gattttcCCTCTTCTGAAAAACCTTCCTATTATTTTCAGCTCTAAAAAAG
AGTGTCAGAATTACATGAGGGATGTtgaatgataaaaataaaaataaaac
ttttctgtTCATGAGATAAAGTACAAGGATTAAACATTAATAAAGCATTA
AAGCTAGTATGGTTTTTGAAGAGTTGCTGTTAGAAAGATTAAAGTGACTG
ACCGATGAAATCaaagcaacaaaatttcaaaacaaatgaactacgcagct
ctggtcgcagctctactctaccatttttgtgaAGCGaatttttgctatat
tgtgcacgtacctttaacttctaccccaagcgaaaatttgctatataaat
cacatcttcaaaccgatgattttatcaaaatgaccttgaatggtttggct
tgaagccacgaaaactttctcggtttggtagctaggactgcaaaaaatgc
cgttttaaaatggtgtaccctgacagtgaacagcaacaaaattaccggaa
gccgaaacacggacttagaatgtgaagttgatcaaattgccgcgcggacg
gcacgcatctaagcaatctaagcggtggttcttcggttttaaatgtatat
tttgctgttaaatggaaaaaaattagtttgaacgttgacagaaaggatct
ttatcatcccttgacttttaacagcaagtatcaagtatcaaataaggtcg
attaatgagaggtttttgcaagtcgcgcgggcgggtgggaggagtgctct
tttaatgAACGAAaattaccttgcaaaaccaagtggatattctatgataa
agaagtacggaggtaatcaaatttgtcgaatttgtcaagaaataaatcaa
aactgccctagaaccaacaagccactatctttgtacatttttgtttttgt
tttatttttatgttttgatgattttcgacagacgattcgtgattcgaata
aaaatgttcgatcgttcgactaatatcgttcgattttattaaggcaccat
ttagagtagaataactagaaggaaaaaaaaagggCTATGCGCGGCGGGCG
GGGGCGGGTGTTGTGCCTCCGTAGATTACGTGGtatgtttggggcattaa
ggctcttacgaccctgtctctatagcggcgtTATTAGAGgaatttttaga
gtgtctcttattttgctagcaacttgcgaactgaggtggagtctggattg
cttcgcaacccttatacNTAGCAACTTGCGAactgaggtggagtctggat
cacttcgcaacccttaaAAAATACAGCTAGGtagttgttttgatttaact
ttgtattttaaggaccagccaggtcattcatttgagggctatgcatgtta
gcctccactgtaCTGATGCAGCAGTGCAAGTTACCCGCCTACATGGTATA
TACCAGAAAAAAGCTTGTCTTTATTAAAGTTGGTAAAGTAATCTGATCTA
TAGAAAAATGTTTCATCTAAAAGGAAAGGAATAAACAAACAgtagtaatt
ttgaaaaattcacaCAACTTACCATTTTATGGTCTGCAGAAGAGGTCCAA
AATCAAACTACAATGAGCAGTCGTGCCAAGGCACGTTGTTgaatttttcc
agatttttcggCAACTGCTGGGCTACCATTTTGGTTACTGATGAAGATTT
ACACTTTGTGGTGGAGCAATCCTCGCAGTGAAATGCCACCATTTTGAAAT
CCTTTCCAAAACGTGAGTTTGCGCGGGAAAcaagggaattttttttttct
tgatgaTGGAAAGATGGGATTGTATGGTCCTTATGTCCTTGTATGGATCA
CCAGACTAGtgatgaaagtgaaaatgagCTGAAAGTTTGGATTTTATAAC
TATAAGCTGTTTTCTTTTACACTTTCCCTTTATTTACtttctttatttac
ttttgCTTGTCTTTGCTtgacaattttcaatattttcattttgatttgtt
ctGATCTGATGTCTGAACATAACATATCTGTTAATAAATATGATTGACAG
ACCTACTACCCATCTGTGTTTATGCCCAGTGCACTGTGTTATATTTGCTA
GGAGGCCCCCCCCCTagagcggtttgcgtgatggcgtgattgggactttt
ttcttgcgtgatggcgtgataagagattttttttggcgtgatggcgtgat
caagattttggcgtgatgcgtgatagggcgaaagtttgaggcgtgatgcg
tgatttgggctattttttgctattttttgcgtgaggacaaattttagcga
ttttcgtgatgcgggatggagaaaattttttgcgtgatggcgtgattagg
ggtgccgctggtgGGCCTCTGCTAGGGCAATTAGCAATTTGATAGGACAA
TTAGCAATTTGATAGGACAATTAGCAATTTGAACCAACTCCCCAGGTTAt
ctatcagttacatcaatatgccttcttacctgtctttaaaaatataaaca
aaagtaATCAcgaaaaaggacgcgaaaaaaaagacataagtgtgagaaca
gagtaatcaaactcgttagaaaaagtaccattagaagtcataaaaaatca
acctgaataaatgcaatcgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Naaagtttgtctcggcctttttataatgagcgagacatacgttctctgat
tacacaattttcatattgacattttcgaggcattttgatgtaactgtcta
tCCCAGACTTATAAACAATTTTGCCAGGCTGGAAATGGTGCACAGTACAC
CGAATATATTTGGAATGAGGCAGTAATCACTTTTGGTGTATTGGCGTAAG
AAATGGATATAAAGCTAGATATTGGCGTaagtcaaagcttttcaagacGA
GAGAAGGACCGCCATCTTAACACCCGATTTCTTTATGCCAGGATTATTAA
GCTCCGCCTCTCCCTCGACCGCCATataagaggccccccagcggtttgcg
tgatggcgtgattgggacttttttcttgcgtgatggcgtgattagagact
TTTTTTGGAGTGATGGcgtgttcaaaatttgaggcgtgatgcgtgatttg
ggctatttttcgctattttttacgattttcgtgatacgtgatggagaaat
tctttttgcGTGATAGCGTGATTAGAGGTGCggctggggggcctcatata
ACAGCGTGGAGTGTAAATAGAATATAAAGCTTATTTAGAGCAATGTTTAA
GCATGAGAAAATCAAATATCCCAGGGTTTTTGGTTTTTGGCGTAGATATC
AATttaaaataataacaatttgGCGTGGACTTTGCATCGTTTCCACTCTG
GCAATTTTGTTCTGACACTCTTATAATTAAATATAATGCAGTAATCAATA
GACACGAGTTAAGGTCAAAGATCATaattgttttctgcacaccacatCAA
TGCTCTAAACTAAGGGATGTgggaaaacaaacaatctgaagAATAAGCTA
TCTCGAATTTGTAAGAATTTTGCATAGTTACAAAGAAAGGATATGGCAAC
AAAGCTGTGTGATTGAGTTCGAAAAAGGGGGCAAATTGTGAATTGAGAGA
AAAGttcaacttttgacaaaaaaagatttttgttataACTTAAGCAGGCT
CAGACTAAGCCAGATTTCTTTAAGTTGTTCTTGTAGActttattttggca
aaatttgagtggattttttttaaggaaatggGGCTTCGATATTGAATTTA
GTAGCGATTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttttgcctaag
tacccccccccccgggcgatTCAGAAATCAGAAATATTGATAACATAATG
CTGTTTTACATTAaatattaaagggacataaaagtactgatgaaatttgt
aaacaaaccgtatgcagcgggttacaaaatcaaaacaaatgtcacatgtc
aaaataaaaaataaaaacaaatatggctgattttgatagTTTCAAtcgtt
ttacaagtttgttttggacacatgatttttaaaaattgttctctttaatg
ccacgtggtttgcgcaatgtttacattttactacttttatgtccctttaa
agtttttcataagaaggaaaataaagtttgaaaatggGGAGTTTTTATTT
GCACAATTGGCACAATTGAgttattttttgagatttggCATGTTCTGAAA
TTTTCTGGGAGGActtaattttgtgaaaaaggcctgaaaaggccaatATT
CTCAAATATTGTGACAATTAATCCATCCAGCAATATTGCAGTTCACTCTT
GGGCCGAATGTGAAATTCGGTCCCGgaatttttgaattgaaaattactaa
aatcttgaaaattttcgaCCCGGGAGTGAACTACAAGTATATTTAGAGAA
ACTAAATGACATTTTCGACCCGGGAGTGAACTACAAGTATATATAGAGAA
ACTAAAtgacattttcgaaaaaaatgtcgATAATTTTTAAGCGTCGTCAG
AGGTTTTACCATGCGCCTAAGAGATCATGGTCATCTGCTATCAGGTTAGC
TAAGgttaatacatgttttttttttataagcaagtgtataccccttggtc
aggctcgtgtatgcttgaGTTCTCAAAGTATCCAGGCATagattatgctt
attatatgcttatgaatcatgcttataattcaccccgagccaagttttag
tgaaattttagaaattttgtaaaaatttgttcagatttgggagcagtggt
agccgtggaatgtctttttttttacttgacctcaaccaaaccattttaaa
ctgataaaaaatgacaacttgaaaaatatttcaggctgacatatatgctt
atgttatgcttaggaattctataaatctgagccttcatatgcttataagc
gttatgcttataaaaagaaagtatgTACTGTTTAACACTGCTTATAATAA
ATTAGTAAGAGATCTTATGGTTTCTCAAAAATTTGtgtcaaaagttgaaa
aattaaacaattAAACAACAACACTCTTTGAAGGGACAAAGCTTTatgga
atagaccttttgcttatcaggatgtcatgttgaaCATAATTGAAACACTC
CATTATTAAAGCAATggtaagaagaaaaaaacaatggacATTTATAATTA
TTATGTATTAATATGTCAATGGTTTAATGGATTTCTGATGCCTGAGAAAG
TGGCATGGCCTAAATTGGCAGTTTATTAATTGGTTTGTTTTTAGGCTGTT
TAAGTAAAGAAATAGTCTCCATCTCTGGCTTACAATTTATGTCTATCATA
TCTCACTTTACTcatgggtacctaatagccggggggtttggaataagcag
ggggttggaaaaaactcaaaatttaataagcgggtgGGGTTgagttagcc
tggatatccaagctcaaaattttagaaaaaataagttttacctcagccag
acagaGTTAATACTAGTGTTAATATAATTCACTACTGAAATAATAGAACT
TGGTttacctagaaatcaggtgaacccctgttaTGTAAGAACAGTTAGAT
TAGGTACAGACTAACACAAAGCTTATTGAAAAGAATGAATGTGGGAAAAT
TCTTCTAACATCGTTTCAATTAATTCCATCCAGCAACAACCACAACCACC
ACAAGcacaacaacaaccactacaACTACTACTACGACCCCTCCAACTAC
TACTACCACCACCACTACACCAGGTTGAGATGTTTGTCTCGCTCCTAATT
TCTAAAAATCATCATGGTGTCATTTATCAGTAGAGTTTGACATCCTGCTT
AATAGTCCATACTAAATTTcacttttcttcaattttcatacTTGATTTTG
TCAGCTTAAGTTATGTCCATCAGTGCATATCAACACTGTTAATGATGATT
GTCCTTGTCTtaccataaaaaatatttaaaaaactttatttgcaaatttg
atattttcttacCCATAttaagttattcaaaagactgttttttttaattg
ttacCACTATCAAAAGGTTTGGAACTTtcaaacattctttttcaatttat
tttgaattttggtttatTCTTACCTTAGCTCCAACAACCATTTGCCCAAC
TCCACAACCAAGATGTTCAGGTATTAaaattatagttttttaagTTCGTT
TCTTTTGATTAACCATTCTGATCACCAACGCTTTAACCCTCCTAACTATT
TTTGAAGAGTTTTTTCACACGAATTTACGtttttattcaatttcttatgt
AAACAGGTGTAAAGAATTGCACGCAGTGCTGCCAACCTCACGAAACATAC
ATCAATATTTTCCAAAGTGGATCtgtaagttttcaattttttaaatatga
taAAGGGcaagaaatagtttttttttcatggtTATATATTGATATAAGGT
TTAAAATCTAAAGCTTATGCCAGCATACttcaggcacgacggaagctttt
tatatctggtacggcgaatgaggaaattctGTGCAAAAtctgtgtaggag
agcagatttttatgccattataattaccttttaataccatgaatagataa
ttacagtgtcataaaaataaNcacctcctcaacatagggggtgcagacta
tttctggaatagcccaattaaCGATACTAACTACAATCTGGGACTAAATA
TTGTGGCAAGAATCCCCCCCCCTAGTATCAATGTTGATGGGTGGAAAGGC
TGCCACCATGCTCAGAAAAAGCTCACATCAACACTGATATTAGGGGGGGG
AgggatttttcaagaaattgccACATATTTTGTCGCTGATTTTAAATGTA
CTAAATAGAAGACTATGGGTTAGTGTTTGCTGTATGCATTTAGCAAAGTT
GGATTATTAGTTAAATTTTTACTATTCAAAAGTATTTGCCtctacaaaaa
aatataatggagtctctttaactcaaacCTTAATAAATCAAACGTTACCT
TAACtacgaacaagttttatggtcccttcagtttaAAATGCCTTATAGAT
CTTACAACACAAATCGAAACAGATTTGTGTTTccatgcgtgttcgagtta
tggagactctaatGTATATAATATATTGTTCTCTCCATAGATGATGCTTT
TGGAAGACTCATTAAATCAGTGGAAGTTTCTGGATGCAAACACTTTTTCC
AAGATGCTTTGAAGATCAAGCACNATAttaagttattcaaaagactgttt
tttttaattgttacCACTATCAAAAGGTTTGGAACTTtcaaacattcttt
ttcaatttattttgaattttggtttatTCTTACCTTAGCTCCAACAACCA
TTTGCCCAACTCCACAACCAAGATGTTCAGGTATTAaaattatagttttt
taagTTCGTTTCTTTTGATTAACCATTCTGATCACCAACGCTTTAACCCT
CCTAACTATTTTTGAAGAGTTTTTTCACACGAATTTACGtttttattcaa
tttcttatgtAAACAGGTGTAAAGAATTGCACGCAGTGCTGCCAACCTCA
CGAAACATACATCAATATTTTCCAAAGTGGATCtgtaagttttcaatttt
ttaaatatgataAAGGGcaagaaatagtttttttttcatggtTATATATT
GATATAAGGTTTAAAATCTAAAGCTTATGCCAGCATACttcaggcacgac
ggaagctttttatatctggtacggcgaatgaggaaattctGTGCAAAAtc
tgtgtaggagagcagatttttatgccattataattaccttttaataccat
gaatagataattacagtgtcataaaaataaggaaaaattagtttttatgt
cccttcaaataGAACTGGTACACATTTTGTTTTAGGGACCAAATTACATA
ATGCAAGGAGCTCGCATGTCATCAACACATGATAAGAACTTTTGTTGTGG
AGTTGAAGTGACCAGCAAGAAAATCCAACCAAGTTTTGATGTCAACTCCT
TATCTGACATGAACAATATGATAAAAATGCTGGAGGTAATTTTCAAgtat
acagttgatgctctctaattcgacgttctactactCGATACAATCGATAC
AGTCCCAGTCATCACTCATAAACAACGCTCTATTATTCAaaaagctccct
tattcgatggaaATCCGATctcccttgaaaattgaattagagaACGTCAA
CTGTAATTTCCTTGTAATTGTTTTTCTTATGTTTACTAAACTCACGCGCC
GATTATAAGTACAAACCATACAGtgtttttttcttgattatAAAGATTcg
attttcatttgaaaatgttcttttgGCCTGTTTTGGCTACACCATACTTT
ATATTCAAACTTAATATTTGGGTGACtagaaatattttcaaccaATATAT
CCattgacaattttcaaaaaatattctttctcGATACCGCATATTGGTCT
AATGTCAATAACCCAATCTAATATTGTCACCCTTATTAAGAGATAGAAAT
AATGAGAAGTTCGGGATCACTGATTGAACTCACATTAAGtcagagaaaat
ctttttcaaaaaatgattccAACCTTATGTTAAATAAGGTTAACGGAATA
GATGGGGTTTCAACATAAGGTCAGCTTACGGTTCCTTCTTTCTTATAGCA
AAGGATGGGAGAtcaacaaaatcttttcaatACATTGAAATCGGCACTTG
CATCTAACAACAATAACAATGCTAAAAGTCGAAAGAAGAGATCTCTACAA
GGTAATAAAATGTCCTCTTCAAAGTATCAAAAGCTCGTAATAAACACAAT
GGgctatttcagaaaaaatttgtacctcctatgttgaggaggtctttttc
GGGAAAagtgaccaccctggatttttacactctAAAAactggaccaccct
ggatttttacactcgaaaaaccggaccaccctggattttttattttccat
accaccctggacgtcacacctcctcaacatagggggtgcAGACNNNNNNN
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NNNAACACAAATCGAAACAGATTTGTGTTTccatgcgtgttcgagttatg
gagactctaatGTATATAATATATTGTTCTCTCCATAGATGATGCTTTTG
GAAGACTCATTAAATCAGTGGAAGTTTCTGGATGCAAACACTTTTTCCGA
GATGCTTTGGAGATCAAGCACATTcgaaaaagtcttgaaaaacagaaaaa
gatcACATTATTTTGTCCACTTGATGGTGCATATAATGATTACCTCAAAA
CATGGGAACCCGAAACTTCAGATAAGAAGGAACAAATTTATCACCATTTC
ACAAGACAAGCCAAGCAACGTGGACTGATCTTTGAATCTTTCTTGAAAAA
TGATAAGTTGATCTTAAAATCAACCATTGAAAATGGACAGGTATGCGCAC
TTTAAAACTTCAGGTTTTAAATTTAAAGGGATGAATACACTTGCCTTTAT
TTCCCCTCCCTTAGATACAATTTCTCAATCCCagctaaaaaaaaacattt
aagtaGAATCTTTTTGAATGTGGTACCCTTGTAGTACCATCACTCAATGT
AGGTGAAACATTTTTAAACGGAAACTTTTATATTGTATAAATTGTACCGC
ACCACCTTTTTAAAAACCCacgatcaaagatggtggatctAGCCTGGTCC
AGGGTTTAAAAAGTCAATATATAAATAAAATGGTCTGAGGGGTCTGAGAC
ATACCGTTTAGACCCTATAGACCTGGTCGGTATATGATTAAGCAATCAGG
AGTTTTATTTTCCTAAATTAAGggcttagactacacaatatattgacgaa
aaATCTTCAACAATATtgttttcggaccgtaatgtacgaagtaaacacca
ggtgctctattataaaaaggaattttttcttcctctaaaaatattgttgg
aatattgcaaatctagctgacaatatattgcggaaaCCTTTCCAATATAT
TGCTGACACTATATTTctctgacaatatattgtgtagtgtatttAGCCCT
TTAGAGTCTGAATATGTTTATAAGCATTGTGCTTATGGATAGAAATACCT
GTGTTTAGCGCATAGACACTTTTCTAAAGATTCGAACTATGTTTTTGCTC
AATTGTGACAAGAAACCAATAGTATCTTAAAATCTCCTTAAAACTTTACT
TAGAGAACTATAGATATTTACATTTCTTTACAGATTGTCTTCAAAATTGA
GGATGCTAACATTAAAGTTTGTTTGGCGTATGGTTCAGTCAATATTTGTG
TGATCGACAAAGTACTTCAACCAACTACATACACTGTAATGCAGATCTTA
ACAGATGGCAAACATCTTTCAATCATGAATGAATTATTTCATAAAAGCCC
TCTCCAGAAGCTGCTACATCGCAATCGATTTGTAAATCGTGTGTGTTTCA
CTGACAAAATCTGTTTACCAATTGTCGGCAAATTAAGAAAGCATTTCAAT
GATTTGTTGAAAGCTAAGCAATACACCATTCAACTTATTGAGGACGATTT
CTTCAATAAGATGAACCCAATGCTTATGTTATCATTGAggcaaaacaaag
aaatcagGGAAGAATTTTTGTTACAACATATTTTCCTTGGTATTTTACAA
CACAACGATCAAGACAACAACTCACGATTGATCGCTGCTTCGGCACAACA
ACGACAACCCGTTTCGGAATGGTTATGGAGTGATGGTAAACCGATTGTAT
CAAAGTGGGGTGGATCAATTTTTGTTGTTGCTAGACAAACAAGGGTCAAG
GAAGGATTGATTCAAGTGTTAAGAACAttagaatgaacaaaaaagcAGAT
GAGACTATAACATTATAATGATGATCTTAAGAAGAAGATCATTTATCTTC
GTCTGGAAAATAATCGACAAGATAATGCTGCAATAATTGGATGTGATGAT
TATGTCAATTAACACATCTAATTTCTGAATAAGACTCTTCATTTGAAcaa
gcatgaacatataaacgactggacatctatcttttattgtctctttgaag
cgagcttcgttgccgcctgtatttcaaaattggtatgaaaaatccgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003356XLOC_003356Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005879-exon-sc0000061-1491911889:1060511..1060662TCONS_00005879-exon-sc0000061-1491911889:1060511..1060662Clytia hemisphaericaexon
TCONS_00005879-exon-sc0000061-1510915933:1060511..1060662TCONS_00005879-exon-sc0000061-1510915933:1060511..1060662Clytia hemisphaericaexon
TCONS_00005879-exon-sc0000061-1575043694:1060511..1060662TCONS_00005879-exon-sc0000061-1575043694:1060511..1060662Clytia hemisphaericaexon
TCONS_00005879-exon-sc0000061-1491911889:1061656..1061688TCONS_00005879-exon-sc0000061-1491911889:1061656..1061688Clytia hemisphaericaexon
TCONS_00005879-exon-sc0000061-1510915933:1061656..1061688TCONS_00005879-exon-sc0000061-1510915933:1061656..1061688Clytia hemisphaericaexon
TCONS_00005879-exon-sc0000061-1575043694:1061656..1061688TCONS_00005879-exon-sc0000061-1575043694:1061656..1061688Clytia hemisphaericaexon
TCONS_00005879-exon-sc0000061-1491911889:1071044..1071133TCONS_00005879-exon-sc0000061-1491911889:1071044..1071133Clytia hemisphaericaexon
TCONS_00005879-exon-sc0000061-1510915933:1071044..1071133TCONS_00005879-exon-sc0000061-1510915933:1071044..1071133Clytia hemisphaericaexon
TCONS_00005879-exon-sc0000061-1575043694:1071044..1071133TCONS_00005879-exon-sc0000061-1575043694:1071044..1071133Clytia hemisphaericaexon
TCONS_00005879-exon-sc0000061-1491911889:1071489..1071530TCONS_00005879-exon-sc0000061-1491911889:1071489..1071530Clytia hemisphaericaexon
TCONS_00005879-exon-sc0000061-1510915933:1071489..1071530TCONS_00005879-exon-sc0000061-1510915933:1071489..1071530Clytia hemisphaericaexon
TCONS_00005879-exon-sc0000061-1575043694:1071489..1071530TCONS_00005879-exon-sc0000061-1575043694:1071489..1071530Clytia hemisphaericaexon
TCONS_00005879-exon-sc0000061-1491911889:1071667..1071734TCONS_00005879-exon-sc0000061-1491911889:1071667..1071734Clytia hemisphaericaexon
TCONS_00005879-exon-sc0000061-1510915933:1071667..1071734TCONS_00005879-exon-sc0000061-1510915933:1071667..1071734Clytia hemisphaericaexon
TCONS_00005879-exon-sc0000061-1575043694:1071667..1071734TCONS_00005879-exon-sc0000061-1575043694:1071667..1071734Clytia hemisphaericaexon
TCONS_00005879-exon-sc0000061-1491911889:1073246..1073395TCONS_00005879-exon-sc0000061-1491911889:1073246..1073395Clytia hemisphaericaexon
TCONS_00005879-exon-sc0000061-1510915933:1073246..1073395TCONS_00005879-exon-sc0000061-1510915933:1073246..1073395Clytia hemisphaericaexon
TCONS_00005879-exon-sc0000061-1575043694:1073246..1073395TCONS_00005879-exon-sc0000061-1575043694:1073246..1073395Clytia hemisphaericaexon
TCONS_00005879-exon-sc0000061-1491911889:1074009..1074111TCONS_00005879-exon-sc0000061-1491911889:1074009..1074111Clytia hemisphaericaexon
TCONS_00005879-exon-sc0000061-1510915933:1074009..1074111TCONS_00005879-exon-sc0000061-1510915933:1074009..1074111Clytia hemisphaericaexon
TCONS_00005879-exon-sc0000061-1575043694:1074009..1074111TCONS_00005879-exon-sc0000061-1575043694:1074009..1074111Clytia hemisphaericaexon
TCONS_00005879-exon-sc0000061-1491911889:1076149..1076450TCONS_00005879-exon-sc0000061-1491911889:1076149..1076450Clytia hemisphaericaexon
TCONS_00005879-exon-sc0000061-1510915933:1076149..1076450TCONS_00005879-exon-sc0000061-1510915933:1076149..1076450Clytia hemisphaericaexon
TCONS_00005879-exon-sc0000061-1575043694:1076149..1076450TCONS_00005879-exon-sc0000061-1575043694:1076149..1076450Clytia hemisphaericaexon
TCONS_00005879-exon-sc0000061-1491911889:1077244..1078108TCONS_00005879-exon-sc0000061-1491911889:1077244..1078108Clytia hemisphaericaexon
TCONS_00005879-exon-sc0000061-1510915933:1077244..1078108TCONS_00005879-exon-sc0000061-1510915933:1077244..1078108Clytia hemisphaericaexon
TCONS_00005879-exon-sc0000061-1575043694:1077244..1078108TCONS_00005879-exon-sc0000061-1575043694:1077244..1078108Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:1060511..1078108 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.04112	2.1638	0.680196	0.325318	0.381336	0.247761	1.22545	1.20031	0.784514	1.42491	0.533673	0.394297	0	0	0.251463	0.00114998	0.458937	0.650221	0	0	0.415859	0.597283	1.80258	1.44746	1.01195	0.862413	0.000631785	0.00162512	0.602722	1.09711
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005879 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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