|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005861 ID=TCONS_00005861|Name=TCONS_00005861|organism=Clytia hemisphaerica|type=transcript|length=1677bp TCGAAAATTGGGAGGTATCTGTGTCGCAGATGAAGTACAAACAGGTTTCG CGAGGGCCGGAAAACATGGATTTTGGGCTTTTGAACGACAAGGGGTGGTT CCGGATATCATATCCATCGGAAAACCAATGGGGAACGGACATCCGGTCGC TTGTGTTGTCACTACAGAAGCCGTCGCTCAAGCATTAGAAGATACCAAAA TCTGTTACTTCAATACGTTCGGAGGAAACCCAGTCTCAATGGCAATTGCA AGTGCATGCATGGAAGTGATACGAGATGAGAAGTTACAAGAAAATGCTGA AACCGTGGGAGAATATACCATGGCCAAATTACGtgaattaaaagaaaaac atgaaattatTGGTGATGTCAGGGGTGTTGGATTATTCTTGGGGATCGAG TTGGTGAAGAGCCGCCAAACTAAAGAACCAGCAACATCACAAGCCAAAAG AATAAGTTACTTATTACGGCAACGTGGCGTGTTGATCAGTGGCGATGGTC CAGGAAGAAATGTATTGAAAGTGAAGCCACCTCTTTGTGTGACCAAGGAC GACATGGACATGTTTGTTGAACAATTGGATAAAGTATTGACAGAGTTTGA ACGGGAACAACAAATGTGAATGAATTTGAAAGAGTATCAGAAACTCATCT TGAGAATGTATAGTAGACAATAGTTTAGTGACAAGAAAAAACTGTAAACT TTTTGTTTGACGAAAGGTTTGTAAGTTGTAAATTATAAACTTCACCAATA TTcagaggaatttttttttcgaaatcgccGTGAGATTTCAGGTAAATCTC ATTGAAAAGCTGCAATCGTTTAACATTGCTTGGTAAAAAgctaaaatttc ttttattacTCAATTAATTGCCATAGCTTTGGGAAACCAGGAGAATTTTC TGTTGTTCGAATATTTCGAATTAGAGATCGTTGACTGTATGGCGAATCTT TAAACAAATTTAacctaaaatattatttttaatagAATTAGCGTAAACGT AATCCAATCAGCTTTTAGTAGTAAAGTCTTAaactctccataactcaaat TATTACGGGGTTACGGAGGCCTAACTGTAAACTAACATGTAAAAAAATCG GTAGAAAAAAAGAGCTGGAACTCTTTTATTTCTCAGAAGAACAATTTTCT AAACGTAGTTAAGGGCAAACACACAGATTTTTGTGTAAAAGCTATCAATC TGTATTGAGGACTCAGATTACAACGAAAAACATGgagtttaaaaatataa aaaaagtatacGGTTTGTCAAGGTTCCGCGATATCTAAGGAATTTAGTGT ACTTTTACTAATTTGTTTTTCGCAGCCTGCCAAAATTGCAACATTTTTCA TAGAAGGCATAAAATTGGAATAGCCCTCACCTTTAAATAGCTAGCCCTGG TCTTGGATTCCAGCAAAGGggtttgatttcaaaaatactgatgtaaatat tttaaaattaatatataaaatgctttaaaaatcaatttgaataattttaa cagatttgatataaacaaaaaataaagattctTTGTATTATTTTATGTTC GATTATTtttaaaagacaataaaaaacttcaaaagtttGTAATCTTCACA TAACTAATGTTGTCATGATTTACAATTCTAACCTTGGACcaatctccgag cagattctgatactccgCCCATTGCAC Run BLAST on NCBI transcript from alignment at sc0000061:787891..794613+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005861 ID=TCONS_00005861|Name=TCONS_00005861|organism=Clytia hemisphaerica|type=transcript|length=6723bp|location=Sequence derived from alignment at sc0000061:787891..794613+ (Clytia hemisphaerica) TCGAAAATTGGGAGGTATCTGTGTCGCAGATGAAGTACAAACAGGTTTCG
CGAGGGCCGGAAAACATGGATTTTGGGCTTTTGAACGACAAGGTATATTT
TTGTATATTGTAGATGATAATTCACTACATACCAGAATTCTTCTCAGACT
GGTTTTCTCTTTTAATTCTCCTTTCCTACCCGATGTGTTTTTTCTTAACT
TGCTCATGGGTTAAAGAGCTGTTTCTATCCCCTCTACACTTGCCTCATTC
ATTTAAATTGAAAGATTGCTCATCAGTACATTAACTATAATTCAAACGTT
TCTTGTTTGTTTAACTCACAAACCCTTGTAAACGACTTGCTCTATTATTA
CTCGAACCCTCTATCCGTAACATATCATTAAATTCGTCTGGTAGCCTATT
CACAATTTGACCTATTTTACCTTCATTATTCTGGGAGCAGAATTCAATTG
CTCGAGTTATAGACGACTTTGCTCAACCCAGAAGGTGAATGGGGCTGTTA
TACAttgttggaacggaaattttatgctgattatggaaacccgggTATTA
AAAAGTCTTTCCggacaaaattgcaaacgagcctggagtttgcactcctt
CGGGGCGTTTTTTCGCTTTTCCCTGTTTTATAAAAATGCATCTATTTTTA
TACCCTCCAAACACACTTCTTCATTCTTAGGGGTGGTTCCGGATATCATA
TCCATCGGAAAACCAATGGGGAACGGACATCCGGTCGCTTGTGTTGTCAC
TACAGAAGCCGTCGCTCAAGCATTAGAAGATACCAAAATCTGTTACTTCA
ATACGGTGAGTAAAATGGACCCTCCCTTAGAACTAACATACACtcgagtc
tccataactcgaacactcacggggaacacaaattggCCCAGGATATAGAA
AATTCGAGTTGTAGGATAAGCTCTATAAACAGcagaatctccataactcg
aagatGCTCGAGGGACGGCAACTTTGTTCGAGtggttgaaaattcaaaat
ataggGTAAACTTTATAAGGTTTTGTTACCTGAAGGGACCATAatacttg
ttcgagttaaggaggaATTTGAGTTACAGAAGTTAGAAATAAAAACTTGT
CATAATAGGACCGTTCCTATTTTATTTAGACTCAACGGTATTCCCAACTC
CGTCGGTCGGTACCCCCTGGATGACTATAAAATCAGATCAGCCAAACTTG
AGAAGTCCCGTAAAATACCCTTTTTTCAGTGTACAAgctgaatttaattt
tgctttcaattttagTTCGGAGGAAACCCAGTCTCAATGGCAATTGCAAG
TGCATGCATGGAAGTGATACGAGATGAGAAGTTACAAGAAAATGCTGAAA
CCGTGGGAGAATATACCATGGCCAAATTACGtgaattaaaagaaaaacat
gaaattatTGGTGATGTCAGGTTAGTGGAGTTTTTTTTTGGATCACAAAT
ACCCAGAGGAGGGTCTGACTGGGAAAGGGGTTTGACCTTAATCGAAAATT
AGTCTGATTTGTACTTCTCTATCAATGAAGTAAAtgcctgaagggctaga
atcgaatctttatcatttctcaggcaagaaaagtgGAGTCTTATAAAATA
TgcaccgtatttttgacgacggattgaatcaaACGATtgctttgttttcg
agtgatatctttttcgaaatttaggtgtaaattttagtttcaatccgtca
TTTGTGTTGAACCAGGCGGACTGCGCTAGGCCGCGCANAAATTCAATCCC
ACAgtccttttcgtcttaattcaaaagtcgtgaaagttattacttgttct
ttgtaattgagtgtaatttgcgtgcaagcgtAATAAACGCGAAGGGTGAT
ggattgaatttcagtcaaacataaaactcaatgtctatttttagattcgc
gacGGTGTGCTATTTGGGAATGATACCAAACAATTATGTTTGAAAGTATT
CTAAATGACGCCTATTGACCTTTAGATTGGGATGTTTATAGCAGAATCCT
TAATTGGATGTGGTGGACAAGTTATATTACCTGCTGGCTATCTAAAACGA
ATATACGCGTAAGTTGTAATATAAATCCACAGCGTTAAACCAAGTTCGCA
GGTAACGGTTCAGTTTCGCTCCTAAacggaatgaagccattctattggtt
agaagagACGTGCAAATCGagtttaaccaatagaatgacttCATTTTGTT
TCGTAGCGAAACGGAACCGGTGCTTGTGAACGTGATTAATCAATACAATC
ATCTGACGTTACATGACAGTCTGGATGTTTATTAGATGTTGTTTTGACGT
TAAAACCTTGGTCATTCATTGTTCTGGTTGAGTTTATTAGGGTAATATCT
GAAGAATCAACTAATAGACCTCATTTTGAAAACTCTTGGCTTGACTACAC
GAAAAAGAAACATGGATAACTGAAGACCAATTTTAGGAAATAGCTATTTT
CAGCTgcgattattatttttttcattcttagCCACGTTCGAAAATTGGGA
GGTATCTGTGTCGCAGATGAAGTACAAACAGGTTTCGCGAGGGCCGGAAA
ACATGGATTTTGGGCTTTTGAACGACAAGGTATATTTTTGTATATTGTAG
ATGATAATTCACTACATACCAGAATTCTTCTCAGACTGGTTTTCTCTTTT
AATTCTCCTTTCCTACCCGATGTGTTTTTTCTTAACTTGCTCATGGGTTA
AAGAGCTGTTTCTATCCCCTCTACACTTGCCTCATTCATTTAAATTGAAA
GATTGCTCATCAGTACATTAACTATAATTCAAACGTTTCTTGTTTGTTTA
ACTCACAAACCCTTGTAAACGACTTGCTCTATTATTACTCGAACCCTCTA
TCCGTAACATATCATTAAATTCGTCTGGTAGCCTATTCACAATTTGACCT
ATTTTACCTTCATTATTCTGGGAGCAGAATTCAATTGCTCGAGTTATAGA
CGACTTTGCTCAACCCAGAAGGTGAATGGGGCTGTTATACAttgttggaa
cggaaattttatgctgattatggaaacccgggTATTAAAAAGTCTTTCCg
gacaaaattgcaaacgagcctggagtttgcactccttCGGGGCGTTTTTT
CGCTTTTCCCTGTTTTATAAAAATGCATCTATTTTTATACCCTCCAAACA
CACTTCTTCATTCTTAGGGGTGGTTCCGGATATCATATCCATCGGAAAAC
CAATGGGGAACGGACATCCGGTCGCTTGTGTTGTCACTACAGAAGCCGTC
GCTCAAGCATTAGAAGATACCAAAATCTGTTACTTCAATACGGTGAGTAA
AATGGACCCTCCCTTAGAACTAACATACACtcgagtctccataactcgaa
cactcacggggaacacaaattggCCCAGGATATAGAAAATTCGAGTTGTA
GGATAAGCTCTATAAACAGcagaatctccataactcgaagatGCTCGAGG
GACGGCGAACTTTGTTCGAGtggttgaaaattcaaaatataggGTAAACT
TTATAAGGTTTTGTTACCTGAAGGGACCATaagacttgttcgagttaagg
agaaatTTGAGTTACAGAAGTTAGAAATAAAAACTTGTTATAATAGGACT
GTTCCTATTTTTTTAGACTCAACGGTATTCCCAACTCCGTCGGTCGGTAC
CCCCTGGATGACTATAAAATCAGATCAGCCAAACTTGAAAAGTCCTGTAA
ATACCCTTTTTTCAGTGTACAAgctgaatttaattttgctttcaatttta
gTTCGGAGGAAACCCAGTCTCAATGGCAATTGCAAGTGCATGCATGGAAG
TGATACGAGATGAGAAGTTACAAGAAAATGCTGAAACCGTGGGAGAATAT
ACCATGGCCAAATTACgagaattaaaagaaaaacatgaaattatTGGTGA
TGTCAGGTTAGTGGAGTTTTTTTTTGGATCACAAATACCCAGAGGAGGGT
CTGACTGGGATAGGGGTTTGACCTTAATCGAAAATTAGTCTGATTTGTAC
TTCTCTATCAATGAAGTAAAtgcctgaagggctagaatcgaatctttatc
atttctcaggcaagaaaagtgGAGTCTTATAAAATATgcaccgtattttt
gacgacggattgaatcaaACGATtgctttgttttcgagtgatatcttttt
cgaaatttaggtgtaaattttagtttcaatccgtcaTTTGTGTTGAACCA
GGCGGACTGcgctaggccgcgcaactttggtaggatttggtaggcttcaa
atcctagcaaggagattcgattctagcccatcgggcttatacttcattgt
tcTCGATGCTTCTTagttttctataagaaactttttgtaaatttgCAAGC
ACTCGGAagatttgatttcaaaaagaattatctttgctttgaaaatttgc
acactgAATGGATTAAATCAATGAAAGAGTTCGATAAGAGTATCTTCACC
TCTACCGTGACCACTTTGCCTCGGCTCGCATGGTTGTCATACAAACGCAG
GATTGGAAGTATCATTTTTCgccagaattttgaaaaatgtaatacacaaa
aaaacaaagaatggctagattcaatccgtcatccgAAATACGACACAAAT
CTTAAGGGTTCTTTCTTGCTATTGGCAAAGGTTGAAAATTCACCTCTAGC
AGCCTCGACTCAAATTTAACCCAATGCTTTGACACTGTTACTTTAGACTC
ATCATTCATAATACATCTAATCTCCGTctgaaatttctttgaaaacttca
GCATCTACATTTTCTTCACAAATCATACACAAATTCTCTTTATACTTCTA
GGGGTGTTGGATTATTCTTGGGGATCGAGTTGGTGAAGAGCCGCCAAACT
AAAGAACCAGCAACATCACAAGCCAAAAGAATAAGTTACTTGTAAGTAAT
TCTACACGTATTGTAACCATTGATTTCATAGCCATGAAGGGCTCTTGCat
aggaaatgaagccacttaggTTCCCACGTGGGTTTTTCGCAAATGCCAGC
TTGAAAGTAATCGCTAGATCCATCGGAAGATCCATCGCTAGATCCATCGG
AAACAGAGATTTAATCTGTCATTTTAAATGCGGCGCAAATCTAAAAGcta
cactttttcttgcttgagcaAGGTTGacgattcctctctagccccttcgg
ggctttcAACTCAACTGTATTCTACATTCCAGACTGGAGCATATTTATAC
TACAACTCAGGGTGCAAGGTTCATAGCATTAATGTTCAGTGGCATACAAA
AGGATTTACATTCATTTGCCAAATGTTTTGAGATTGGTTAAGCGATGAAG
GTTTTCGCAGGGACAAGTTTTGTCATCCTCTACTCTAAAGATATTTTGGT
CAGTTTTACTCTGACTAAGACCTCTGACCACCAAGGATTTAATAGGTTTG
GGACATTCCCGTACTTCATCTGGCCTAATAGTGTTTTAAAGTAACTGCAA
ATAAAATGCATGctatttaagattttgaaatgtaagtttaacttatttat
ttatccAGATTACGGCAACGTGGCGTGTTGATCAGTGGCGATGGTCCAGG
AAGAAATGTATTGAAAGTGAAGCCACCTCTTTGTGTGACCAAGGACGACA
TGGACATGTTTGTTGAACAATTGGATAAAGTATTGACAGAGTTTGAACGG
GAACAACAAATGTGAATGAATTTGAAAGAGTATCAGAAACTCATCTTGAG
AATGTATAGTAGACAATAGTTTAGTGACAAGAAAAAACTGTAAACTTTTT
GTTTGACGAAAGGTTTGTAAGTTGTAAATTATAAACTTCACCAATATTca
gaggaatttttttttcgaaatcgccGTGAGATTTCAGGTAAATCTCATTG
AAAAGCTGCAATCGTTTAACATTGCTTGGTAAAAAgctaaaatttctttt
attacTCAATTAATTGCCATAGCTTTGGGAAACCAGGAGAATTTTCTGTT
GTTCGAATATTTCGAATTAGAGATCGTTGACTGTATGGCGAATCTTTAAA
CAAATTTAacctaaaatattatttttaatagAATTAGCGTAAACGTAATC
CAATCAGCTTTTAGTAGTAAAGTCTTAaactctccataactcaaatTATT
ACGGGGTTACGGAGGCCTAACTGTAAACTAACATGTAAAAAAATCGGTAG
AAAAAAAGAGCTGGAACTCTTTTATTTCTCAGAAGAACAATTTTCTAAAC
GTAGTTAAGGGCAAACACACAGATTTTTGTGTAAAAGCTATCAATCTGTA
TTGAGGACTCAGATTACAACGAAAAACATGgagtttaaaaatataaaaaa
agtatacGGTTTGTCAAGGTTCCGCGATATCTAAGGAATTTAGTGTACTT
TTACTAATTTGTTTTTCGCAGCCTGCCAAAATTGCAACATTTTTCATAGA
AGGCATAAAATTGGAATAGCCCTCACCTTTAAATAGCTAGCCCTGGTCTT
GGATTCCAGCAAAGGggtttgatttcaaaaatactgatgtaaatatttta
aaattaatatataaaatgctttaaaaatcaatttgaataattttaacaga
tttgatataaacaaaaaataaagattctTTGTATTATTTTATGTTCGATT
ATTtttaaaagacaataaaaaacttcaaaagtttGTAATCTTCACATAAC
TAATGTTGTCATGATTTACAATTCTAACCTTGGACcaatctccgagcaga
ttctgatactccgCCCATTGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00005861-exon-sc0000061-1491911889:787891..787982 | TCONS_00005861-exon-sc0000061-1491911889:787891..787982 | Clytia hemisphaerica | exon |
TCONS_00005861-exon-sc0000061-1510915933:787891..787982 | TCONS_00005861-exon-sc0000061-1510915933:787891..787982 | Clytia hemisphaerica | exon |
TCONS_00005861-exon-sc0000061-1575043694:787891..787982 | TCONS_00005861-exon-sc0000061-1575043694:787891..787982 | Clytia hemisphaerica | exon |
TCONS_00005861-exon-sc0000061-1491911889:788571..788695 | TCONS_00005861-exon-sc0000061-1491911889:788571..788695 | Clytia hemisphaerica | exon |
TCONS_00005861-exon-sc0000061-1510915933:788571..788695 | TCONS_00005861-exon-sc0000061-1510915933:788571..788695 | Clytia hemisphaerica | exon |
TCONS_00005861-exon-sc0000061-1575043694:788571..788695 | TCONS_00005861-exon-sc0000061-1575043694:788571..788695 | Clytia hemisphaerica | exon |
TCONS_00005861-exon-sc0000061-1491911889:789156..789310 | TCONS_00005861-exon-sc0000061-1491911889:789156..789310 | Clytia hemisphaerica | exon |
TCONS_00005861-exon-sc0000061-1510915933:789156..789310 | TCONS_00005861-exon-sc0000061-1510915933:789156..789310 | Clytia hemisphaerica | exon |
TCONS_00005861-exon-sc0000061-1575043694:789156..789310 | TCONS_00005861-exon-sc0000061-1575043694:789156..789310 | Clytia hemisphaerica | exon |
TCONS_00005861-exon-sc0000061-1491911889:792692..792781 | TCONS_00005861-exon-sc0000061-1491911889:792692..792781 | Clytia hemisphaerica | exon |
TCONS_00005861-exon-sc0000061-1510915933:792692..792781 | TCONS_00005861-exon-sc0000061-1510915933:792692..792781 | Clytia hemisphaerica | exon |
TCONS_00005861-exon-sc0000061-1575043694:792692..792781 | TCONS_00005861-exon-sc0000061-1575043694:792692..792781 | Clytia hemisphaerica | exon |
TCONS_00005861-exon-sc0000061-1491911889:793399..794613 | TCONS_00005861-exon-sc0000061-1491911889:793399..794613 | Clytia hemisphaerica | exon |
TCONS_00005861-exon-sc0000061-1510915933:793399..794613 | TCONS_00005861-exon-sc0000061-1510915933:793399..794613 | Clytia hemisphaerica | exon |
TCONS_00005861-exon-sc0000061-1575043694:793399..794613 | TCONS_00005861-exon-sc0000061-1575043694:793399..794613 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000061 | supercontig | sc0000061:787891..794613 + |
Blast
BLAST of TCONS_00005861 vs. Swiss-Prot (Human)
Match: AT2L1 (Ethanolamine-phosphate phospho-lyase OS=Homo sapiens GN=ETNPPL PE=1 SV=1) HSP 1 Score: 236.498 bits (602), Expect = 4.624e-70 Identity = 107/199 (53.77%), Postives = 149/199 (74.87%), Query Frame = 2
Query: 11 GGICVADEVQTGFARAGKHGFWAFERQG--VVPDIISIGKPMGNGHPVACVVTTEAVAQALEDTKICYFNTFGGNPVSMAIASACMEVIRDEKLQENAETVGEYTMAKLRELKEKHEIIGDVRGVGLFLGIELVKSRQTKEPATSQAKRISYLLRQRGVLISGDGPGRNVLKVKPPLCVTKDDMDMFVEQLDKVLTEFE 601
GG+ +ADEVQ GF R GKH FW+F+ G VPDI+++GKPMGNGHPVACVVTT+ +A+A + + YFNT+GGNPVS A+ A +++I +E LQ NA+ VG Y L++ K KH +IGD+RG+GLF+GI+LVK + PAT++A+ I Y ++++ VL+S DGP RNVLK+KPP+C T++D V+QLD++LT E
Sbjct: 240 GGVFIADEVQVGFGRVGKH-FWSFQMYGEDFVPDIVTMGKPMGNGHPVACVVTTKEIAEAFSSSGMEYFNTYGGNPVSCAVGLAVLDIIENEDLQGNAKRVGNYLTELLKKQKAKHTLIGDIRGIGLFIGIDLVKDHLKRTPATAEAQHIIYKMKEKRVLLSADGPHRNVLKIKPPMCFTEEDAKFMVDQLDRILTVLE 437
The following BLAST results are available for this feature:
|