TCONS_00005861 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005861
Unique NameTCONS_00005861
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1677

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005861 ID=TCONS_00005861|Name=TCONS_00005861|organism=Clytia hemisphaerica|type=transcript|length=1677bp
TCGAAAATTGGGAGGTATCTGTGTCGCAGATGAAGTACAAACAGGTTTCG
CGAGGGCCGGAAAACATGGATTTTGGGCTTTTGAACGACAAGGGGTGGTT
CCGGATATCATATCCATCGGAAAACCAATGGGGAACGGACATCCGGTCGC
TTGTGTTGTCACTACAGAAGCCGTCGCTCAAGCATTAGAAGATACCAAAA
TCTGTTACTTCAATACGTTCGGAGGAAACCCAGTCTCAATGGCAATTGCA
AGTGCATGCATGGAAGTGATACGAGATGAGAAGTTACAAGAAAATGCTGA
AACCGTGGGAGAATATACCATGGCCAAATTACGtgaattaaaagaaaaac
atgaaattatTGGTGATGTCAGGGGTGTTGGATTATTCTTGGGGATCGAG
TTGGTGAAGAGCCGCCAAACTAAAGAACCAGCAACATCACAAGCCAAAAG
AATAAGTTACTTATTACGGCAACGTGGCGTGTTGATCAGTGGCGATGGTC
CAGGAAGAAATGTATTGAAAGTGAAGCCACCTCTTTGTGTGACCAAGGAC
GACATGGACATGTTTGTTGAACAATTGGATAAAGTATTGACAGAGTTTGA
ACGGGAACAACAAATGTGAATGAATTTGAAAGAGTATCAGAAACTCATCT
TGAGAATGTATAGTAGACAATAGTTTAGTGACAAGAAAAAACTGTAAACT
TTTTGTTTGACGAAAGGTTTGTAAGTTGTAAATTATAAACTTCACCAATA
TTcagaggaatttttttttcgaaatcgccGTGAGATTTCAGGTAAATCTC
ATTGAAAAGCTGCAATCGTTTAACATTGCTTGGTAAAAAgctaaaatttc
ttttattacTCAATTAATTGCCATAGCTTTGGGAAACCAGGAGAATTTTC
TGTTGTTCGAATATTTCGAATTAGAGATCGTTGACTGTATGGCGAATCTT
TAAACAAATTTAacctaaaatattatttttaatagAATTAGCGTAAACGT
AATCCAATCAGCTTTTAGTAGTAAAGTCTTAaactctccataactcaaat
TATTACGGGGTTACGGAGGCCTAACTGTAAACTAACATGTAAAAAAATCG
GTAGAAAAAAAGAGCTGGAACTCTTTTATTTCTCAGAAGAACAATTTTCT
AAACGTAGTTAAGGGCAAACACACAGATTTTTGTGTAAAAGCTATCAATC
TGTATTGAGGACTCAGATTACAACGAAAAACATGgagtttaaaaatataa
aaaaagtatacGGTTTGTCAAGGTTCCGCGATATCTAAGGAATTTAGTGT
ACTTTTACTAATTTGTTTTTCGCAGCCTGCCAAAATTGCAACATTTTTCA
TAGAAGGCATAAAATTGGAATAGCCCTCACCTTTAAATAGCTAGCCCTGG
TCTTGGATTCCAGCAAAGGggtttgatttcaaaaatactgatgtaaatat
tttaaaattaatatataaaatgctttaaaaatcaatttgaataattttaa
cagatttgatataaacaaaaaataaagattctTTGTATTATTTTATGTTC
GATTATTtttaaaagacaataaaaaacttcaaaagtttGTAATCTTCACA
TAACTAATGTTGTCATGATTTACAATTCTAACCTTGGACcaatctccgag
cagattctgatactccgCCCATTGCAC
Run BLAST on NCBI

transcript from alignment at sc0000061:787891..794613+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005861 ID=TCONS_00005861|Name=TCONS_00005861|organism=Clytia hemisphaerica|type=transcript|length=6723bp|location=Sequence derived from alignment at sc0000061:787891..794613+ (Clytia hemisphaerica)
TCGAAAATTGGGAGGTATCTGTGTCGCAGATGAAGTACAAACAGGTTTCG CGAGGGCCGGAAAACATGGATTTTGGGCTTTTGAACGACAAGGTATATTT TTGTATATTGTAGATGATAATTCACTACATACCAGAATTCTTCTCAGACT GGTTTTCTCTTTTAATTCTCCTTTCCTACCCGATGTGTTTTTTCTTAACT TGCTCATGGGTTAAAGAGCTGTTTCTATCCCCTCTACACTTGCCTCATTC ATTTAAATTGAAAGATTGCTCATCAGTACATTAACTATAATTCAAACGTT TCTTGTTTGTTTAACTCACAAACCCTTGTAAACGACTTGCTCTATTATTA CTCGAACCCTCTATCCGTAACATATCATTAAATTCGTCTGGTAGCCTATT CACAATTTGACCTATTTTACCTTCATTATTCTGGGAGCAGAATTCAATTG CTCGAGTTATAGACGACTTTGCTCAACCCAGAAGGTGAATGGGGCTGTTA TACAttgttggaacggaaattttatgctgattatggaaacccgggTATTA AAAAGTCTTTCCggacaaaattgcaaacgagcctggagtttgcactcctt CGGGGCGTTTTTTCGCTTTTCCCTGTTTTATAAAAATGCATCTATTTTTA TACCCTCCAAACACACTTCTTCATTCTTAGGGGTGGTTCCGGATATCATA TCCATCGGAAAACCAATGGGGAACGGACATCCGGTCGCTTGTGTTGTCAC TACAGAAGCCGTCGCTCAAGCATTAGAAGATACCAAAATCTGTTACTTCA ATACGGTGAGTAAAATGGACCCTCCCTTAGAACTAACATACACtcgagtc tccataactcgaacactcacggggaacacaaattggCCCAGGATATAGAA AATTCGAGTTGTAGGATAAGCTCTATAAACAGcagaatctccataactcg aagatGCTCGAGGGACGGCAACTTTGTTCGAGtggttgaaaattcaaaat ataggGTAAACTTTATAAGGTTTTGTTACCTGAAGGGACCATAatacttg ttcgagttaaggaggaATTTGAGTTACAGAAGTTAGAAATAAAAACTTGT CATAATAGGACCGTTCCTATTTTATTTAGACTCAACGGTATTCCCAACTC CGTCGGTCGGTACCCCCTGGATGACTATAAAATCAGATCAGCCAAACTTG AGAAGTCCCGTAAAATACCCTTTTTTCAGTGTACAAgctgaatttaattt tgctttcaattttagTTCGGAGGAAACCCAGTCTCAATGGCAATTGCAAG TGCATGCATGGAAGTGATACGAGATGAGAAGTTACAAGAAAATGCTGAAA CCGTGGGAGAATATACCATGGCCAAATTACGtgaattaaaagaaaaacat gaaattatTGGTGATGTCAGGTTAGTGGAGTTTTTTTTTGGATCACAAAT ACCCAGAGGAGGGTCTGACTGGGAAAGGGGTTTGACCTTAATCGAAAATT AGTCTGATTTGTACTTCTCTATCAATGAAGTAAAtgcctgaagggctaga atcgaatctttatcatttctcaggcaagaaaagtgGAGTCTTATAAAATA TgcaccgtatttttgacgacggattgaatcaaACGATtgctttgttttcg agtgatatctttttcgaaatttaggtgtaaattttagtttcaatccgtca TTTGTGTTGAACCAGGCGGACTGCGCTAGGCCGCGCANAAATTCAATCCC ACAgtccttttcgtcttaattcaaaagtcgtgaaagttattacttgttct ttgtaattgagtgtaatttgcgtgcaagcgtAATAAACGCGAAGGGTGAT ggattgaatttcagtcaaacataaaactcaatgtctatttttagattcgc gacGGTGTGCTATTTGGGAATGATACCAAACAATTATGTTTGAAAGTATT CTAAATGACGCCTATTGACCTTTAGATTGGGATGTTTATAGCAGAATCCT TAATTGGATGTGGTGGACAAGTTATATTACCTGCTGGCTATCTAAAACGA ATATACGCGTAAGTTGTAATATAAATCCACAGCGTTAAACCAAGTTCGCA GGTAACGGTTCAGTTTCGCTCCTAAacggaatgaagccattctattggtt agaagagACGTGCAAATCGagtttaaccaatagaatgacttCATTTTGTT TCGTAGCGAAACGGAACCGGTGCTTGTGAACGTGATTAATCAATACAATC ATCTGACGTTACATGACAGTCTGGATGTTTATTAGATGTTGTTTTGACGT TAAAACCTTGGTCATTCATTGTTCTGGTTGAGTTTATTAGGGTAATATCT GAAGAATCAACTAATAGACCTCATTTTGAAAACTCTTGGCTTGACTACAC GAAAAAGAAACATGGATAACTGAAGACCAATTTTAGGAAATAGCTATTTT CAGCTgcgattattatttttttcattcttagCCACGTTCGAAAATTGGGA GGTATCTGTGTCGCAGATGAAGTACAAACAGGTTTCGCGAGGGCCGGAAA ACATGGATTTTGGGCTTTTGAACGACAAGGTATATTTTTGTATATTGTAG ATGATAATTCACTACATACCAGAATTCTTCTCAGACTGGTTTTCTCTTTT AATTCTCCTTTCCTACCCGATGTGTTTTTTCTTAACTTGCTCATGGGTTA AAGAGCTGTTTCTATCCCCTCTACACTTGCCTCATTCATTTAAATTGAAA GATTGCTCATCAGTACATTAACTATAATTCAAACGTTTCTTGTTTGTTTA ACTCACAAACCCTTGTAAACGACTTGCTCTATTATTACTCGAACCCTCTA TCCGTAACATATCATTAAATTCGTCTGGTAGCCTATTCACAATTTGACCT ATTTTACCTTCATTATTCTGGGAGCAGAATTCAATTGCTCGAGTTATAGA CGACTTTGCTCAACCCAGAAGGTGAATGGGGCTGTTATACAttgttggaa cggaaattttatgctgattatggaaacccgggTATTAAAAAGTCTTTCCg gacaaaattgcaaacgagcctggagtttgcactccttCGGGGCGTTTTTT CGCTTTTCCCTGTTTTATAAAAATGCATCTATTTTTATACCCTCCAAACA CACTTCTTCATTCTTAGGGGTGGTTCCGGATATCATATCCATCGGAAAAC CAATGGGGAACGGACATCCGGTCGCTTGTGTTGTCACTACAGAAGCCGTC GCTCAAGCATTAGAAGATACCAAAATCTGTTACTTCAATACGGTGAGTAA AATGGACCCTCCCTTAGAACTAACATACACtcgagtctccataactcgaa cactcacggggaacacaaattggCCCAGGATATAGAAAATTCGAGTTGTA GGATAAGCTCTATAAACAGcagaatctccataactcgaagatGCTCGAGG GACGGCGAACTTTGTTCGAGtggttgaaaattcaaaatataggGTAAACT TTATAAGGTTTTGTTACCTGAAGGGACCATaagacttgttcgagttaagg agaaatTTGAGTTACAGAAGTTAGAAATAAAAACTTGTTATAATAGGACT GTTCCTATTTTTTTAGACTCAACGGTATTCCCAACTCCGTCGGTCGGTAC CCCCTGGATGACTATAAAATCAGATCAGCCAAACTTGAAAAGTCCTGTAA ATACCCTTTTTTCAGTGTACAAgctgaatttaattttgctttcaatttta gTTCGGAGGAAACCCAGTCTCAATGGCAATTGCAAGTGCATGCATGGAAG TGATACGAGATGAGAAGTTACAAGAAAATGCTGAAACCGTGGGAGAATAT ACCATGGCCAAATTACgagaattaaaagaaaaacatgaaattatTGGTGA TGTCAGGTTAGTGGAGTTTTTTTTTGGATCACAAATACCCAGAGGAGGGT CTGACTGGGATAGGGGTTTGACCTTAATCGAAAATTAGTCTGATTTGTAC TTCTCTATCAATGAAGTAAAtgcctgaagggctagaatcgaatctttatc atttctcaggcaagaaaagtgGAGTCTTATAAAATATgcaccgtattttt gacgacggattgaatcaaACGATtgctttgttttcgagtgatatcttttt cgaaatttaggtgtaaattttagtttcaatccgtcaTTTGTGTTGAACCA GGCGGACTGcgctaggccgcgcaactttggtaggatttggtaggcttcaa atcctagcaaggagattcgattctagcccatcgggcttatacttcattgt tcTCGATGCTTCTTagttttctataagaaactttttgtaaatttgCAAGC ACTCGGAagatttgatttcaaaaagaattatctttgctttgaaaatttgc acactgAATGGATTAAATCAATGAAAGAGTTCGATAAGAGTATCTTCACC TCTACCGTGACCACTTTGCCTCGGCTCGCATGGTTGTCATACAAACGCAG GATTGGAAGTATCATTTTTCgccagaattttgaaaaatgtaatacacaaa aaaacaaagaatggctagattcaatccgtcatccgAAATACGACACAAAT CTTAAGGGTTCTTTCTTGCTATTGGCAAAGGTTGAAAATTCACCTCTAGC AGCCTCGACTCAAATTTAACCCAATGCTTTGACACTGTTACTTTAGACTC ATCATTCATAATACATCTAATCTCCGTctgaaatttctttgaaaacttca GCATCTACATTTTCTTCACAAATCATACACAAATTCTCTTTATACTTCTA GGGGTGTTGGATTATTCTTGGGGATCGAGTTGGTGAAGAGCCGCCAAACT AAAGAACCAGCAACATCACAAGCCAAAAGAATAAGTTACTTGTAAGTAAT TCTACACGTATTGTAACCATTGATTTCATAGCCATGAAGGGCTCTTGCat aggaaatgaagccacttaggTTCCCACGTGGGTTTTTCGCAAATGCCAGC TTGAAAGTAATCGCTAGATCCATCGGAAGATCCATCGCTAGATCCATCGG AAACAGAGATTTAATCTGTCATTTTAAATGCGGCGCAAATCTAAAAGcta cactttttcttgcttgagcaAGGTTGacgattcctctctagccccttcgg ggctttcAACTCAACTGTATTCTACATTCCAGACTGGAGCATATTTATAC TACAACTCAGGGTGCAAGGTTCATAGCATTAATGTTCAGTGGCATACAAA AGGATTTACATTCATTTGCCAAATGTTTTGAGATTGGTTAAGCGATGAAG GTTTTCGCAGGGACAAGTTTTGTCATCCTCTACTCTAAAGATATTTTGGT CAGTTTTACTCTGACTAAGACCTCTGACCACCAAGGATTTAATAGGTTTG GGACATTCCCGTACTTCATCTGGCCTAATAGTGTTTTAAAGTAACTGCAA ATAAAATGCATGctatttaagattttgaaatgtaagtttaacttatttat ttatccAGATTACGGCAACGTGGCGTGTTGATCAGTGGCGATGGTCCAGG AAGAAATGTATTGAAAGTGAAGCCACCTCTTTGTGTGACCAAGGACGACA TGGACATGTTTGTTGAACAATTGGATAAAGTATTGACAGAGTTTGAACGG GAACAACAAATGTGAATGAATTTGAAAGAGTATCAGAAACTCATCTTGAG AATGTATAGTAGACAATAGTTTAGTGACAAGAAAAAACTGTAAACTTTTT GTTTGACGAAAGGTTTGTAAGTTGTAAATTATAAACTTCACCAATATTca gaggaatttttttttcgaaatcgccGTGAGATTTCAGGTAAATCTCATTG AAAAGCTGCAATCGTTTAACATTGCTTGGTAAAAAgctaaaatttctttt attacTCAATTAATTGCCATAGCTTTGGGAAACCAGGAGAATTTTCTGTT GTTCGAATATTTCGAATTAGAGATCGTTGACTGTATGGCGAATCTTTAAA CAAATTTAacctaaaatattatttttaatagAATTAGCGTAAACGTAATC CAATCAGCTTTTAGTAGTAAAGTCTTAaactctccataactcaaatTATT ACGGGGTTACGGAGGCCTAACTGTAAACTAACATGTAAAAAAATCGGTAG AAAAAAAGAGCTGGAACTCTTTTATTTCTCAGAAGAACAATTTTCTAAAC GTAGTTAAGGGCAAACACACAGATTTTTGTGTAAAAGCTATCAATCTGTA TTGAGGACTCAGATTACAACGAAAAACATGgagtttaaaaatataaaaaa agtatacGGTTTGTCAAGGTTCCGCGATATCTAAGGAATTTAGTGTACTT TTACTAATTTGTTTTTCGCAGCCTGCCAAAATTGCAACATTTTTCATAGA AGGCATAAAATTGGAATAGCCCTCACCTTTAAATAGCTAGCCCTGGTCTT GGATTCCAGCAAAGGggtttgatttcaaaaatactgatgtaaatatttta aaattaatatataaaatgctttaaaaatcaatttgaataattttaacaga tttgatataaacaaaaaataaagattctTTGTATTATTTTATGTTCGATT ATTtttaaaagacaataaaaaacttcaaaagtttGTAATCTTCACATAAC TAATGTTGTCATGATTTACAATTCTAACCTTGGACcaatctccgagcaga ttctgatactccgCCCATTGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003346XLOC_003346Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005861-exon-sc0000061-1491911889:787891..787982TCONS_00005861-exon-sc0000061-1491911889:787891..787982Clytia hemisphaericaexon
TCONS_00005861-exon-sc0000061-1510915933:787891..787982TCONS_00005861-exon-sc0000061-1510915933:787891..787982Clytia hemisphaericaexon
TCONS_00005861-exon-sc0000061-1575043694:787891..787982TCONS_00005861-exon-sc0000061-1575043694:787891..787982Clytia hemisphaericaexon
TCONS_00005861-exon-sc0000061-1491911889:788571..788695TCONS_00005861-exon-sc0000061-1491911889:788571..788695Clytia hemisphaericaexon
TCONS_00005861-exon-sc0000061-1510915933:788571..788695TCONS_00005861-exon-sc0000061-1510915933:788571..788695Clytia hemisphaericaexon
TCONS_00005861-exon-sc0000061-1575043694:788571..788695TCONS_00005861-exon-sc0000061-1575043694:788571..788695Clytia hemisphaericaexon
TCONS_00005861-exon-sc0000061-1491911889:789156..789310TCONS_00005861-exon-sc0000061-1491911889:789156..789310Clytia hemisphaericaexon
TCONS_00005861-exon-sc0000061-1510915933:789156..789310TCONS_00005861-exon-sc0000061-1510915933:789156..789310Clytia hemisphaericaexon
TCONS_00005861-exon-sc0000061-1575043694:789156..789310TCONS_00005861-exon-sc0000061-1575043694:789156..789310Clytia hemisphaericaexon
TCONS_00005861-exon-sc0000061-1491911889:792692..792781TCONS_00005861-exon-sc0000061-1491911889:792692..792781Clytia hemisphaericaexon
TCONS_00005861-exon-sc0000061-1510915933:792692..792781TCONS_00005861-exon-sc0000061-1510915933:792692..792781Clytia hemisphaericaexon
TCONS_00005861-exon-sc0000061-1575043694:792692..792781TCONS_00005861-exon-sc0000061-1575043694:792692..792781Clytia hemisphaericaexon
TCONS_00005861-exon-sc0000061-1491911889:793399..794613TCONS_00005861-exon-sc0000061-1491911889:793399..794613Clytia hemisphaericaexon
TCONS_00005861-exon-sc0000061-1510915933:793399..794613TCONS_00005861-exon-sc0000061-1510915933:793399..794613Clytia hemisphaericaexon
TCONS_00005861-exon-sc0000061-1575043694:793399..794613TCONS_00005861-exon-sc0000061-1575043694:793399..794613Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:787891..794613 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.57835e-08 0 0 0 0 0 0 0 0 0 0 0.0417914 0 0.039161 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Blast
BLAST of TCONS_00005861 vs. Swiss-Prot (Human)
Match: AT2L1 (Ethanolamine-phosphate phospho-lyase OS=Homo sapiens GN=ETNPPL PE=1 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 4.624e-70
Identity = 107/199 (53.77%), Postives = 149/199 (74.87%), Query Frame = 2
Query:   11 GGICVADEVQTGFARAGKHGFWAFERQG--VVPDIISIGKPMGNGHPVACVVTTEAVAQALEDTKICYFNTFGGNPVSMAIASACMEVIRDEKLQENAETVGEYTMAKLRELKEKHEIIGDVRGVGLFLGIELVKSRQTKEPATSQAKRISYLLRQRGVLISGDGPGRNVLKVKPPLCVTKDDMDMFVEQLDKVLTEFE 601
            GG+ +ADEVQ GF R GKH FW+F+  G   VPDI+++GKPMGNGHPVACVVTT+ +A+A   + + YFNT+GGNPVS A+  A +++I +E LQ NA+ VG Y    L++ K KH +IGD+RG+GLF+GI+LVK    + PAT++A+ I Y ++++ VL+S DGP RNVLK+KPP+C T++D    V+QLD++LT  E
Sbjct:  240 GGVFIADEVQVGFGRVGKH-FWSFQMYGEDFVPDIVTMGKPMGNGHPVACVVTTKEIAEAFSSSGMEYFNTYGGNPVSCAVGLAVLDIIENEDLQGNAKRVGNYLTELLKKQKAKHTLIGDIRGIGLFIGIDLVKDHLKRTPATAEAQHIIYKMKEKRVLLSADGPHRNVLKIKPPMCFTEEDAKFMVDQLDRILTVLE 437          
The following BLAST results are available for this feature:
BLAST of TCONS_00005861 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AT2L14.624e-7053.77Ethanolamine-phosphate phospho-lyase OS=Homo sapie... [more]
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