|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005856 ID=TCONS_00005856|Name=TCONS_00005856|organism=Clytia hemisphaerica|type=transcript|length=2831bpRun BLAST on NCBI protein sequence of TCONS_00005856-protein >TCONS_00005856-protein ID=TCONS_00005856-protein|Name=TCONS_00005856-protein|organism=Clytia hemisphaerica|type=polypeptide|length=513bp MAMVNGKHHTTTKAETIEGKKRKISSDINGNHIVSKQNGISQNGHNGNLQRun BLAST on NCBI transcript from alignment at sc0000061:768924..794613+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005856 ID=TCONS_00005856|Name=TCONS_00005856|organism=Clytia hemisphaerica|type=transcript|length=25690bp|location=Sequence derived from alignment at sc0000061:768924..794613+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000061:768924..794613+ >TCONS_00005856 ID=TCONS_00005856|Name=TCONS_00005856|organism=Clytia hemisphaerica|type=CDS|length=18504bp|location=Sequence derived from alignment at sc0000061:768924..794613+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005856 vs. Swiss-Prot (Human)
Match: AT2L1 (Ethanolamine-phosphate phospho-lyase OS=Homo sapiens GN=ETNPPL PE=1 SV=1) HSP 1 Score: 475.322 bits (1222), Expect = 5.835e-157 Identity = 222/440 (50.45%), Postives = 315/440 (71.59%), Query Frame = 1
Query: 442 CGSVDLEDVLARRHVNVGRATEIHYPQDPLYIHHGKGQYLFDENNTRYLDLMNNVANVGHCHPHVTKAGSFQMSELSTNSRFLHHQILKVAEDLKKTLPKELSVCFFVNSGTEANDLAMRLARQYTSHKDCVVIDHAYHGHSMSVIDISPYKFKNPKGSGQADYIHVLDSPDSYKGKHQGDNEDDEIGRKYAEDAIKVMDEAVSKGRKIGMFIAESLIGCGGQVILPAGYLKRIYAHVRKLGGICVADEVQTGFARAGKHGFWAFERQG--VVPDIISIGKPMGNGHPVACVVTTEAVAQALEDTKICYFNTFGGNPVSMAIASACMEVIRDEKLQENAETVGEYTMAKLRELKEKHEIIGDVRGVGLFLGIELVKSRQTKEPATSQAKRISYLLRQRGVLISGDGPGRNVLKVKPPLCVTKDDMDMFVEQLDKVLTEFE 1755
C D L R ++G + ++ + DP+ I + QY+FDEN +YLD +NNVA+VGHCHP V KA QM L+TNSRFLH I++ A+ L TLP++LSVC+F NSG+EANDLA+RLARQ+ H+D + +DHAYHGH S+I+ISPYKF+ K + +++HV +PD+Y+GK++ D+ D YA++ K++++A + GRKI FIAES+ CGGQ+I PAGY +++ +V GG+ +ADEVQ GF R GKH FW+F+ G VPDI+++GKPMGNGHPVACVVTT+ +A+A + + YFNT+GGNPVS A+ A +++I +E LQ NA+ VG Y L++ K KH +IGD+RG+GLF+GI+LVK + PAT++A+ I Y ++++ VL+S DGP RNVLK+KPP+C T++D V+QLD++LT E
Sbjct: 2 CELYSKRDTLGLRKKHIGPSCKVFFASDPIKIVRAQRQYMFDENGEQYLDCINNVAHVGHCHPGVVKAALKQMELLNTNSRFLHDNIVEYAKRLSATLPEKLSVCYFTNSGSEANDLALRLARQFRGHQDVITLDHAYHGHLSSLIEISPYKFQKGKDV-KKEFVHVAPTPDTYRGKYREDHADS--ASAYADEVKKIIEDAHNSGRKIAAFIAESMQSCGGQIIPPAGYFQKVAEYVHGAGGVFIADEVQVGFGRVGKH-FWSFQMYGEDFVPDIVTMGKPMGNGHPVACVVTTKEIAEAFSSSGMEYFNTYGGNPVSCAVGLAVLDIIENEDLQGNAKRVGNYLTELLKKQKAKHTLIGDIRGIGLFIGIDLVKDHLKRTPATAEAQHIIYKMKEKRVLLSADGPHRNVLKIKPPMCFTEEDAKFMVDQLDRILTVLE 437 The following BLAST results are available for this feature:
BLAST of TCONS_00005856 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.